mRNA_H-elongata_contig60393.13579.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 184 bits (468), Expect = 3.840e-52 Identity = 110/201 (54.73%), Postives = 133/201 (66.17%), Query Frame = 1
Query: 1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPN---IETSPVP-AAGQGGPKRPRLNPFKAAAAAHAASSSIAGD--SIGEIRQKMFIIVDVEISAFKTAPGIRVLEV----VGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
ATALDPR KHLYGI Q E GVWRAV S AV++AL + D A P ++T P P GQG KRPR++ F+AAAA S E R+++ IVD+E+SAFK APGIRV ++ G K V+N+PL WR K+ E+P LA LARRVLAI +SQAQS+R+FST G VTPTR+RLL ENVELLVYLR
Sbjct: 344 ATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLR 544
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.480e-42 Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = 1
Query: 1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPNIE---TSPVPAAGQGGPKRPRLNPFKAAAAAHA--ASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEV-VGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRM 492
ATA+DPR KHLYGI Q E VWRAV ++AV++A S D A + P + T PV GQG PKR RL+ F+AAAAAHA A+SS G ++ E R+++ +VD+E+++F+T PGI + GK VYNDPL WWRT++ EFP LA LARRVLAI +SQA S+R+
Sbjct: 380 ATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 110 bits (275), Expect = 6.130e-26 Identity = 82/219 (37.44%), Postives = 107/219 (48.86%), Query Frame = 1
Query: 1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMAL--RNKSDDTAAVPVTTPNIETSPVP-------------------------AAGQGGPKRPRLNPFKAAAAAHAASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEV-VGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
ATALDPR K LYG+ ++E+ VW+ V EAV++A+ RN + A P A GG + P+L+ A SS +R VE++AFK + GI++ E G VY DPL WWR + +FP LA LARRVLAI A+QA+S+R+FS G +VT RN L P VELLV LR
Sbjct: 82 ATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLD--------EGADSSFVRLITSSVR--------VELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLR 284
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.050e-21 Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 235 AHAASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
AH A S +R++M I+ E+ AFK PG+ V G+ V PL WWR K RE+P LA LARRVL I A QAQS+R+FS+ G +VT TR R+ PENV L+V+LR
Sbjct: 429 AHGDKQQSANASSSPLRRQMESIISREVDAFKITPGLAVSWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLR 541
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: UPI000CD62F95 (zinc finger BED domain-containing protein 1-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD62F95) HSP 1 Score: 88.2 bits (217), Expect = 7.180e-18 Identity = 68/200 (34.00%), Postives = 104/200 (52.00%), Query Frame = 1
Query: 1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAV----EMALRNKSDDTAAVPVTTPNIETSPVPAAGQGGPKRPRLNPFKAAAAAHAASSSIAGDSI----GEIRQKM-FIIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
A+ALDPRFK + + +EE+ V+RA+T E E A R+ D A T ETS + + PKR A++ + S+ G S G ++ K ++I E+ A+ AP + + E DPL WWR E FP L++L++R L I + ++R+FST G +VT R+ L PE+V+ LV+L+
Sbjct: 67 ASALDPRFKGMPFLTEEERLEVYRALTEENASLENECARRSTEVDEAPEGTGTLGEETS-MEDSPSAAPKRK--------ASSSSLLVSLLGQSFTDTEGTVKPKTPYVIAKEEMEAYCKAPSLPLTE---------DPLNWWRVHEVMFPLLSLLSKRYLCIPGTSVSAERVFSTAGDVVTAKRSTLKPEHVDQLVFLK 248
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A8B8G1F8_9HEMI (zinc finger BED domain-containing protein 1-like n=4 Tax=Aphididae TaxID=27482 RepID=A0A8B8G1F8_9HEMI) HSP 1 Score: 77.8 bits (190), Expect = 6.560e-15 Identity = 33/62 (53.23%), Postives = 49/62 (79.03%), Query Frame = 1
Query: 385 DPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYL 570
+PL WWRT+E ++P +A +A++ LAI ++ A S+R FST G +VTP R+ LLPENV++LV+L
Sbjct: 76 NPLEWWRTREEKYPAIATIAKKYLAIPSTSASSERCFSTAGNIVTPKRSCLLPENVDMLVFL 137
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: UPI000BBD9CAA (zinc finger BED domain-containing protein 1-like n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD9CAA) HSP 1 Score: 77.4 bits (189), Expect = 5.600e-14 Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 1
Query: 1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPNIETSPVPAAGQGGP---KRPRLNPFKAAAAAHAASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
ATALDPRFK L + + +W +T E V + + + A ++ E+ P + P K F A S+ ++I E E++++K I V E DPL WW+T ++P +A LA+R LA+ + S+R+FST G +VT +R+RLLPENV+ L++++
Sbjct: 60 ATALDPRFKSLPYLDEACVQKIWDDLTLEIVNLEEQAQQHCEAQAASSSSAAESEP----SETSPPHKKSAMATVFADFFTTEARSTKPLPETIRE-----------EVTSYKETSCISVDE---------DPLAWWKTNAHKYPHVAKLAQRDLAVPGTSVPSERVFSTAGDIVTASRSRLLPENVDKLIFMQ 229
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: UPI0005F55F89 (zinc finger BED domain-containing protein 1-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F55F89) HSP 1 Score: 75.9 bits (185), Expect = 3.670e-13 Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 286 QKMFIIVDVE--ISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYL 570
Q M I DVE A+ + P +RV D L WW+T+ +FP LA+LAR+ L+I A+ A ++R FST G +VTP RN L PENV +LV+L
Sbjct: 181 QPMHCINDVESQFQAYLSEPQLRV---------DLDYLEWWKTRADKFPALAILARKYLSIPATSASAERTFSTAGNIVTPKRNCLSPENVNMLVFL 268
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A3Q2TAZ2_FUNHE (BED-type domain-containing protein n=8 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q2TAZ2_FUNHE) HSP 1 Score: 77.0 bits (188), Expect = 4.540e-13 Identity = 58/191 (30.37%), Postives = 95/191 (49.74%), Query Frame = 1
Query: 1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPNIETSPVPAAGQGGPKRPRLNPFKAAAAAHAASSSIAGDSIGEIRQKMF-IIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYL 570
++ALDPRFK L + +EE+ V+ VTSEA + +D P+++ + +AG PKR R + + HA ++ S ++ K I + E+ + P + + E DPL WW + FP L+ LA+R L I + +R+FST G ++T R+ L P++V+ LV+L
Sbjct: 427 SSALDPRFKRLPFLTEEERLDVYAGVTSEAASL-----EED-------LPSVDDNVSDSAGPSAPKR-RASSLLESLLGHAFNAI----SEPAVQSKTANAIAEEEMELYCRCPAVPLSE---------DPLDWWHRHKGTFPLLSRLAKRYLCIPGTSVSEERVFSTAGDVITAKRSALKPDHVDQLVFL 591
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A6Q2YGN0_ESOLU (BED-type domain-containing protein n=4 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2YGN0_ESOLU) HSP 1 Score: 76.3 bits (186), Expect = 8.580e-13 Identity = 63/191 (32.98%), Postives = 89/191 (46.60%), Query Frame = 1
Query: 1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPNIETSPVPAAGQGGPKRPRLNPFKAAAAAHAASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
A+ LDPRFK L + Q+EQ V V +EAV + +D A VP P G GPKR R P S+ G + + +V + + LE ++ DPL WWR E FP LA LA+R L I + S+R+FST G ++T R+ L PE+V+ L++L+
Sbjct: 487 ASILDPRFKALPFLSQDEQYDVQSKVIAEAVAL------EDYAEVPSG---------PDEGSPGPKR-RCTPTPL--------ESLLGKTFSDAG-----VVPKSSNTRAEEEMKKYLETTSPLSLSEDPLIWWRCHETVFPLLAKLAKRYLCIPGTSVASERVFSTAGDILTAQRSMLTPEHVDQLLFLQ 648 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60393.13579.1 >prot_H-elongata_contig60393.13579.1 ID=prot_H-elongata_contig60393.13579.1|Name=mRNA_H-elongata_contig60393.13579.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPback to top mRNA from alignment at H-elongata_contig60393:1654..2226+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60393.13579.1 ID=mRNA_H-elongata_contig60393.13579.1|Name=mRNA_H-elongata_contig60393.13579.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig60393:1654..2226+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60393:1654..2226+ >mRNA_H-elongata_contig60393.13579.1 ID=mRNA_H-elongata_contig60393.13579.1|Name=mRNA_H-elongata_contig60393.13579.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig60393:1654..2226+ (Himanthalia elongata Himel1 dioecious)back to top |