prot_H-elongata_contig60387.13578.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60387.13578.1
Unique Nameprot_H-elongata_contig60387.13578.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length42
Homology
BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: A0A831LK76_9EURY (Carbohydrate-binding protein n=1 Tax=Methanofollis liminatans TaxID=2201 RepID=A0A831LK76_9EURY)

HSP 1 Score: 50.4 bits (119), Expect = 1.460e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    1 AFRLQDDVDIKLIPS-GGFYVGWTASGEFLRYTVDVEMDG 39
            A+R  DDVDI++  S GG+ VGWTA+GE+LRYTV+VE  G
Sbjct:   26 AYR-SDDVDIQVCKSEGGYNVGWTATGEWLRYTVNVETPG 64          
BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: J1AMI0_9EURY (Parallel beta-helix repeat protein n=2 Tax=Methanofollis liminatans TaxID=2201 RepID=J1AMI0_9EURY)

HSP 1 Score: 50.1 bits (118), Expect = 7.130e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    1 AFRLQDDVDIKLIPS-GGFYVGWTASGEFLRYTVDVEMDG 39
            A+R  DDVDI++  S GG+ VGWTA+GE+LRYTV+VE  G
Sbjct:  916 AYR-TDDVDIQVCKSEGGYNVGWTATGEWLRYTVNVETPG 954          
BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: A0A7K4HP91_9EURY (Carbohydrate-binding protein n=1 Tax=Methanofollis tationis TaxID=81417 RepID=A0A7K4HP91_9EURY)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0
Query:    5 QDDVDIKLIPS-GGFYVGWTASGEFLRYTVDVEMDG 39
             DDVD+++  + GG+ VGWTA+GE+L+YTVDVE  G
Sbjct:  882 SDDVDLQVCSADGGYSVGWTATGEWLKYTVDVETSG 917          
BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: A0A1V6CN55_9BACT (Beta-xylanase n=1 Tax=Bacteroidetes bacterium ADurb.Bin123 TaxID=1852804 RepID=A0A1V6CN55_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0
Query:    2 FRLQDDVDIKLIPSGGFYVGWTASGEFLRYTVDVEMD 38
            +R    VDI  I  GG+ VGWTA+GE+L+YTV VE +
Sbjct:  455 YRTDCGVDIDTIAGGGYVVGWTATGEWLKYTVKVEEE 491          
BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: UPI001F354002 (alpha-amylase family glycosyl hydrolase n=1 Tax=Fulvivirga sp. W9P-11 TaxID=2904246 RepID=UPI001F354002)

HSP 1 Score: 47.0 bits (110), Expect = 8.770e-5
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 0
Query:    2 FRLQDDVDIKLIPSGGFYVGWTASGEFLRYTVDVEMDGKGT 42
            +R  + VDI+    GG+ VGWT+SGE+L YTV+V   G  T
Sbjct:  600 YRASESVDIEASSQGGYNVGWTSSGEWLEYTVNVAAAGNYT 640          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A831LK76_9EURY1.460e-662.50Carbohydrate-binding protein n=1 Tax=Methanofollis... [more]
J1AMI0_9EURY7.130e-662.50Parallel beta-helix repeat protein n=2 Tax=Methano... [more]
A0A7K4HP91_9EURY1.330e-558.33Carbohydrate-binding protein n=1 Tax=Methanofollis... [more]
A0A1V6CN55_9BACT6.410e-554.05Beta-xylanase n=1 Tax=Bacteroidetes bacterium ADur... [more]
UPI001F3540028.770e-548.78alpha-amylase family glycosyl hydrolase n=1 Tax=Fu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008979Galactose-binding-like domain superfamilyGENE3D2.60.120.260coord: 1..42
e-value: 1.1E-6
score: 30.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60387contigH-elongata_contig60387:157..282 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60387.13578.1mRNA_H-elongata_contig60387.13578.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60387 157..282 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60387.13578.1 ID=prot_H-elongata_contig60387.13578.1|Name=mRNA_H-elongata_contig60387.13578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
AFRLQDDVDIKLIPSGGFYVGWTASGEFLRYTVDVEMDGKGT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like_sf