mRNA_H-elongata_contig60387.13578.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60387.13578.1
Unique NamemRNA_H-elongata_contig60387.13578.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: A0A831LK76_9EURY (Carbohydrate-binding protein n=1 Tax=Methanofollis liminatans TaxID=2201 RepID=A0A831LK76_9EURY)

HSP 1 Score: 50.4 bits (119), Expect = 1.460e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 AFRLQDDVDIKLIPS-GGFYVGWTASGEFLRYTVDVEMDG 117
            A+R  DDVDI++  S GG+ VGWTA+GE+LRYTV+VE  G
Sbjct:   26 AYR-SDDVDIQVCKSEGGYNVGWTATGEWLRYTVNVETPG 64
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BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: J1AMI0_9EURY (Parallel beta-helix repeat protein n=2 Tax=Methanofollis liminatans TaxID=2201 RepID=J1AMI0_9EURY)

HSP 1 Score: 50.1 bits (118), Expect = 7.130e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 AFRLQDDVDIKLIPS-GGFYVGWTASGEFLRYTVDVEMDG 117
            A+R  DDVDI++  S GG+ VGWTA+GE+LRYTV+VE  G
Sbjct:  916 AYR-TDDVDIQVCKSEGGYNVGWTATGEWLRYTVNVETPG 954
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BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: A0A7K4HP91_9EURY (Carbohydrate-binding protein n=1 Tax=Methanofollis tationis TaxID=81417 RepID=A0A7K4HP91_9EURY)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   13 QDDVDIKLIPS-GGFYVGWTASGEFLRYTVDVEMDG 117
             DDVD+++  + GG+ VGWTA+GE+L+YTVDVE  G
Sbjct:  882 SDDVDLQVCSADGGYSVGWTATGEWLKYTVDVETSG 917
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BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: A0A1V6CN55_9BACT (Beta-xylanase n=1 Tax=Bacteroidetes bacterium ADurb.Bin123 TaxID=1852804 RepID=A0A1V6CN55_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    4 FRLQDDVDIKLIPSGGFYVGWTASGEFLRYTVDVEMD 114
            +R    VDI  I  GG+ VGWTA+GE+L+YTV VE +
Sbjct:  455 YRTDCGVDIDTIAGGGYVVGWTATGEWLKYTVKVEEE 491
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BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Match: UPI001F354002 (alpha-amylase family glycosyl hydrolase n=1 Tax=Fulvivirga sp. W9P-11 TaxID=2904246 RepID=UPI001F354002)

HSP 1 Score: 47.0 bits (110), Expect = 8.770e-5
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    4 FRLQDDVDIKLIPSGGFYVGWTASGEFLRYTVDVEMDGKGT 126
            +R  + VDI+    GG+ VGWT+SGE+L YTV+V   G  T
Sbjct:  600 YRASESVDIEASSQGGYNVGWTSSGEWLEYTVNVAAAGNYT 640
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60387.13578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A831LK76_9EURY1.460e-662.50Carbohydrate-binding protein n=1 Tax=Methanofollis... [more]
J1AMI0_9EURY7.130e-662.50Parallel beta-helix repeat protein n=2 Tax=Methano... [more]
A0A7K4HP91_9EURY1.330e-558.33Carbohydrate-binding protein n=1 Tax=Methanofollis... [more]
A0A1V6CN55_9BACT6.410e-554.05Beta-xylanase n=1 Tax=Bacteroidetes bacterium ADur... [more]
UPI001F3540028.770e-548.78alpha-amylase family glycosyl hydrolase n=1 Tax=Fu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60387contigH-elongata_contig60387:157..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002510.1
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.1540396-CDS-H-elongata_contig60387:156..2821622930978.1540396-CDS-H-elongata_contig60387:156..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60387 157..282 +
1691679648.4087963-CDS-H-elongata_contig60387:156..2821691679648.4087963-CDS-H-elongata_contig60387:156..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60387 157..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60387.13578.1prot_H-elongata_contig60387.13578.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60387 157..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60387.13578.1

>prot_H-elongata_contig60387.13578.1 ID=prot_H-elongata_contig60387.13578.1|Name=mRNA_H-elongata_contig60387.13578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
AFRLQDDVDIKLIPSGGFYVGWTASGEFLRYTVDVEMDGKGT
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mRNA from alignment at H-elongata_contig60387:157..282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60387.13578.1 ID=mRNA_H-elongata_contig60387.13578.1|Name=mRNA_H-elongata_contig60387.13578.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig60387:157..282+ (Himanthalia elongata Himel1 dioecious)
GCATTCCGCCTCCAAGATGATGTGGACATCAAGCTTATCCCGTCGGGAGG
TTTCTATGTAGGTTGGACAGCCAGTGGGGAATTCTTGCGCTACACGGTTG
ACGTTGAAATGGACGGTAAGGGCACA
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Coding sequence (CDS) from alignment at H-elongata_contig60387:157..282+

>mRNA_H-elongata_contig60387.13578.1 ID=mRNA_H-elongata_contig60387.13578.1|Name=mRNA_H-elongata_contig60387.13578.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig60387:157..282+ (Himanthalia elongata Himel1 dioecious)
GCATTCCGCCTCCAAGATGATGTGGACATCAAGCTTATCCCGTCGGGAGG
TTTCTATGTAGGTTGGACAGCCAGTGGGGAATTCTTGCGCTACACGGTTG
ACGTTGAAATGGACGGTAAGGGCACAGCATTCCGCCTCCAAGATGATGTG
GACATCAAGCTTATCCCGTCGGGAGGTTTCTATGTAGGTTGGACAGCCAG
TGGGGAATTCTTGCGCTACACGGTTGACGTTGAAATGGACGGTAAGGGCA
CA
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