mRNA_H-elongata_contig60345.13575.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60345.13575.1
Unique NamemRNA_H-elongata_contig60345.13575.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: D7FJ11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ11_ECTSI)

HSP 1 Score: 830 bits (2144), Expect = 5.330e-290
Identity = 410/509 (80.55%), Postives = 457/509 (89.78%), Query Frame = 1 
Query:    1 MSPRDDDEQGEGYIRIPIRGAKQSVEVYTDELPTDLNDLVDVLKAEIAPLDIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDVGRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENARKQRPNFPATLGEAAVNFHNGNYKQALELYSEAIRLNPECSASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARKTESALNTISMAYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSRKGALSVDLNDGLRPGDFVRVGSEFSTAVGGQFFDGFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEPAMKALEAVLAEIPDNQEALVFLGVLHANNKQRQPALSKFKRALELNPHLSDAWIAQAQV 1527
            MSPRDDD + +G IRIP+RGA+Q+VEVYT+ELP+D ND+VDVLKAEIAPLDIWLRFAVEYYRQG+E HFRGILN+I+E+LTP+TER YADDRRAFDVGRIRILNALAADSVKQASKC+DRS RD     ALSHLTSADR+DNMSELTWVGKGVFYLCQGELDRAKYFFENARKQR NFPATLGEAAVNFH+GNYKQAL+LYSEAIR+NPECSASVRVG GLCCYKLGQISRAQAAM RAL LDPQNVQALVGSAILELSTA AG+ D  R+TE+A+NTISMAYHVD KNA VLNHLANHYFWTWSPLK T++I +GSR G +  DL D L  GD +R+GS F+TA+G + FDG +L LR+E+T PSGD++KLF KD+RKV+ELASTAYENT+APEIKAESC+LKARVHHA+G L+EAKLLY EAC+LWPQFP AQYGMAQ+LV EG ++PAMKAL AVLAE+PDNQEALV LGVL A NK R PALSKFKRALELNP LSDAWIAQAQV
Sbjct:    3 MSPRDDDARDDGCIRIPVRGAQQTVEVYTEELPSDYNDVVDVLKAEIAPLDIWLRFAVEYYRQGSEEHFRGILNEIIEALTPDTERFYADDRRAFDVGRIRILNALAADSVKQASKCSDRSARDDGYTTALSHLTSADRIDNMSELTWVGKGVFYLCQGELDRAKYFFENARKQRHNFPATLGEAAVNFHHGNYKQALDLYSEAIRVNPECSASVRVGLGLCCYKLGQISRAQAAMTRALQLDPQNVQALVGSAILELSTASAGSQDAVRRTENAINTISMAYHVDAKNAMVLNHLANHYFWTWSPLKATLSIAQGSRSGTVRGDLKDALVGGDIIRIGSGFATAMGDEGFDGTTLHLREEFTEPSGDKLKLFTKDYRKVVELASTAYENTSAPEIKAESCYLKARVHHATGNLSEAKLLYNEACHLWPQFPLAQYGMAQMLVNEGSIDPAMKALNAVLAEVPDNQEALVLLGVLCAKNKDRLPALSKFKRALELNPRLSDAWIAQAQV 511
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: A0A835Z0E0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E0_9STRA)

HSP 1 Score: 371 bits (952), Expect = 7.080e-116
Identity = 228/498 (45.78%), Postives = 291/498 (58.43%), Query Frame = 1 
Query:   16 DDEQGEGYIRIPIRG-AKQSVEVYTDELP-TDLNDLVDVLKAEIAPLDIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDV---------------------GRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENARKQRPNFPATLGEAAVNFHNGNYKQALELYSEAIRLNPECSASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARK-TESALNTISMAYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSR----KGALSV--DLNDGLRP----------GDFVRVGS----EFSTAVG---GQFFDGFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHH----------------ASGKLNEAKLLYTEACNLWPQFPPAQYGMAQ 1320
            D E+G  YI +P+   A   V +    LP  D+ +L DVLK            AVEYYRQ  +  FR IL +I+ +L P+TE+ YA+D  AF +                     GR++ILNALA+D+VK+AS  TD   +D     AL +L  ADR+D MSELTWVGKG+FYL QGELDRAKYFFENARK R N  ATLGEA + F  G YK AL+ Y E IR NP C ASVRVG GLCCYKLGQ++RA+AA+ RAL++DP+N  ALVG AILEL+       + AR+  ESA+  +S A+ +D  NA VLNHLANHYFWTW  +K TV+++ G      K  +SV  DL D LRP          GD++R+G     + ST +     +  DG  + L D Y GP+ + + L  K++ KV  LA  A      P++KAES +L ARV H                A+  L +A+ LY EA  L PQF PAQYG+AQ
Sbjct:    6 DGEEGP-YIVVPVSNQAFDDVHIPIKSLPGLDIMELYDVLKV-----------AVEYYRQDCKESFRQILREIIGALNPQTEKYYANDPEAFKIXXXXXXXXXXXXXXXXXELKTGRLKILNALASDAVKRASAATDTKQKDEFYNQALEYLAGADRIDPMSELTWVGKGIFYLSQGELDRAKYFFENARKSRKNLAATLGEACICFQEGRYKAALDHYCEVIRTNPACGASVRVGLGLCCYKLGQVARARAALQRALEMDPRNADALVGLAILELNEGGDQDSEQARRRAESAIKMLSRAFILDRDNAMVLNHLANHYFWTWMLVKTTVSVQAGGHLVVCKDDVSVRADLTDPLRPDGAPDTFFHPGDYIRIGGGPPLQASTPLHVDPTRQSDGTRIFLTDPYPGPTAEGLSLHHKNYDKVKRLAERARAVAKVPDMKAESAYLLARVAHVHAGRADATSAVSQAAAAAHLKDARALYAEAAKLAPQFAPAQYGLAQ 491
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: A0A2P4XRV6_9STRA (RNA polymerase-associated protein CTR9 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRV6_9STRA)

HSP 1 Score: 296 bits (759), Expect = 3.680e-91
Identity = 176/514 (34.24%), Postives = 278/514 (54.09%), Query Frame = 1 
Query:    1 MSPRDDDEQGEGYIRIPIRGAKQSVEVYTDELPTDLNDLVDVLKAEIAPLDIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDVGRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENAR-KQRPNFPATLGEAAVNFHNGNYKQALELYSEAIRLNPEC--SASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARKTESA--LNTISMAYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSRKGALSVDLNDGLRPGDFVRVGSEFSTAVGGQ--FFDGFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEPAMKALEAVLAEIPDNQEALVFLGVLHANNKQRQPALSKFKRALELNPHLSDAWIAQA 1521
            MS  +++   +  + IP++ ++Q+VEV+ DELP D+ND++D+L+AE+APLD+WL+FAVEYY QG    F+ IL    E   P  E +Y D+     + RI+   ALA+ +V       D   R+  +  A+     ADR+D+   +T VGK + ++ + E DRA  F ++     + N PA LG+A + +    YK A +LY EAI+L+P    +A++R+ F  CCY LG +++A+A M     LD  NV A++ +A+ +L++        + + ES+  +  I  A+ +D  N TVLNHLANHYF  W P+  TV++  GS   A S D++  + PG  + +G ++   +           L+L   Y   S     + +KD+ K+  LA  A+ +T  PEI++ESC+L  R  HA GK  +A   Y  A  LWP+F    +G+AQ+     +   A   LE      P+N E L  LG ++    ++  A+   +R +EL P   +A I  A
Sbjct:    1 MSDVEEEPSNQRALLIPVKNSEQAVEVFVDELPDDVNDIIDILRAEVAPLDVWLQFAVEYYNQGHVAQFQEILAVASE---PGIEEIYKDN--VSRMCRIKFFIALASHAVNAMWNEEDEKKREAISQRAVGFFQRADRLDHQHPMTLVGKALMFMAKNEDDRADRFIKSVLISNKTNLPAILGKALLLYRKKQYKDAKKLYLEAIKLHPRSPQAANMRMCFAYCCYHLGAVAKARAVMKYTQSLDETNVDAVIANALWQLASQSREERAVSIRDESSRFMMMIHHAHAIDKTNPTVLNHLANHYFSQWIPIPCTVSVVRGSAVVATSKDISSEVSPGQIICIGDKYVAYISRDEDAVSSSGLKLDGPYRDESATATNIARKDYDKMFTLAGNAFHSTKIPEIRSESCYLMGRGCHAQGKYKDAYSYYFNAGRLWPKFVLPWFGLAQMYYERKEFTKAASYLEKANKAYPENVEILSLLGDVYGKLGKKDEAVVLLRRVVELEPGNVEALIGTA 509
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: H3GJ62_PHYRM (Uncharacterized protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3GJ62_PHYRM)

HSP 1 Score: 304 bits (778), Expect = 1.780e-88
Identity = 182/517 (35.20%), Postives = 284/517 (54.93%), Query Frame = 1 
Query:    1 MSPRDDDEQGEGYIRIPIRGAKQSVEVYTDELPTDLNDLVDVLKAEIAPLDIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDVGRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENAR-KQRPNFPATLGEAAVNFHNGNYKQALELYSEAIRLNPEC--SASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARKTESA--LNTISMAYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSRKGALSVDLNDGLRPGDFVRVGSEFSTAVGGQFFDGFS---LELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEPAMKALEAVLAEIPDNQEALVFLGVLHANNKQRQPALSKFKRALELNPHLSDAWIAQAQV 1527
            MS  +D+   +  + IP++ ++Q+VEVY DELP D+ND++D+L+AE+APLD+WL+FAVEYY QG    F+ IL    E   P  E +Y D+  A  + RI+   ALA+ +V       D   R+  +  A+ +   ADR+D+   +T VGK + ++ + E DRA  F ++     + N PA LG+A + +    YK A +LY +AI+L+P    +A++R+ F  CCY LG + +A+A M     LD  NV A++ SA+ +L++        + + ES+  +  I  A+ +D  N TVLNHLANHYF  W PL  TV++  GS   A S D+++ + PG  + +G  +   +  +  D  S   L+L   Y   S     + +KD+ K+  LA  A+ +T  PEI++ESC+L  R  HA GK  +A   Y  A  LWP+F    +G+AQ+     +   A   LE      P+N E L  LG ++    ++  A+   +R +EL P   +A I  A++
Sbjct:    1 MSDAEDEPSNQRALLIPVKNSEQAVEVYVDELPDDVNDIIDILRAEVAPLDVWLQFAVEYYNQGHVAQFQEILAVASE---PGIEEIYKDN--ASRLCRIKFFVALASHAVNAMWNEEDEKKREAISQRAVGYFQRADRLDHQHPMTLVGKALMFMAKNEDDRADRFVKSVLISNKTNLPAILGKALLLYRKKQYKDAKKLYLDAIKLHPRSPQAANMRMCFAYCCYHLGAVEKARAVMRFTASLDETNVDAVIASALWQLASQSREERAVSIRDESSRFMMMIHHAHAIDKTNPTVLNHLANHYFSQWIPLPCTVSVVRGSAVVATSKDISNEVSPGQIICIGDRYVAYIS-RNEDAVSPSGLKLDGPYREESASATNIARKDYDKMFTLAGNAFHSTKIPEIRSESCYLMGRGCHAQGKYKDAYSYYFNAGRLWPKFVLPWFGLAQMYYERKEFTKAASYLEKANKAYPENVEILSLLGDVYGKLGKKDEAVVLLRRVVELEPGNVEALIGTAEL 511
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: A0A421FQJ2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FQJ2_9STRA)

HSP 1 Score: 303 bits (777), Expect = 2.530e-87
Identity = 180/513 (35.09%), Postives = 281/513 (54.78%), Query Frame = 1 
Query:   13 DDDEQG-EGYIRIPIRGAKQSVEVYTDELPTDLNDLVDVLKAEIAPLDIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDVGRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENAR-KQRPNFPATLGEAAVNFHNGNYKQALELYSEAIRLNPEC--SASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARKTESA--LNTISMAYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSRKGALSVDLNDGLRPGDFVRVGSEFSTAVGGQ--FFDGFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEPAMKALEAVLAEIPDNQEALVFLGVLHANNKQRQPALSKFKRALELNPHLSDAWIAQAQV 1527
            DD+  G +  + IP++ +K +VEVY DELP D+ND++D+L+AE+APLD+WL+FAVEYY QG  + F+ IL    E   P  E +Y D+  A  + RI+   ALA+ +V       D   R+  +  A+ +   ADR+D+   +T VGK + ++ + E DRA  F ++     + N PA LG+A + +    YK+A +LY +AI+L+P    +A++R+ F  CCY LG + +A+A M     LD  NV A++ SA+ +L++        + + E +  +  I  A+ +D  N TVLNHLANHYF  W PL  TV++  GS   A S D++  + PG  + +G ++ T +           L+L   Y   S     + +KD+ K+  LA  A+ +T  PEI++ESC+L  R  HA GK  +A   Y  A  LWP+F    +G+AQ+     +   A   LE      P+N E L  LG ++    ++  A+   +R +EL P   +A I  A++
Sbjct:    3 DDERTGTQRALLIPVKNSKDAVEVYADELPDDVNDIIDILRAEVAPLDVWLQFAVEYYNQGHVSQFQEILAVASE---PGIEEIYKDN--ASRISRIKFFIALASHAVNAMWNEEDEKKREAISQRAVGYFQRADRLDHQHPMTLVGKALMFMAKNEDDRADRFIKSVLISNKTNLPAILGKALLLYRKKQYKEAKKLYLDAIKLHPRSPQAANMRMCFAYCCYHLGAVEKARAVMRYTASLDETNVDAVIASALWQLASQSREERAVSIRDEGSRFMMMIHHAHAIDKTNPTVLNHLANHYFSQWIPLPCTVSVVRGSAVVATSKDISSEVSPGQIICIGDKYVTYISRDENAVSPSGLKLDGPYREESATSTNISRKDYDKMFTLAGNAFHSTKIPEIRSESCYLMGRGCHAQGKYKDAYSYYFNAGRLWPKFVLPWFGLAQMYYERKEFTKAASYLEKANKAYPENVEILSLLGDVYGKLGKKDEAVVLLRRVVELEPGNVEALIGTAEL 510
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: A0A448ZS64_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS64_9STRA)

HSP 1 Score: 302 bits (773), Expect = 2.890e-87
Identity = 188/513 (36.65%), Postives = 298/513 (58.09%), Query Frame = 1 
Query:    7 PRDDDEQGEGYIRIPIRGA----KQSVEVYTDELP-TDLNDLVDVLKAEIAPLDIWLRFAVEY--YRQGAETHFRGILNDIVESLTPETERLYADDR-RAFDVGRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENARKQRPN-FPATLGEAAVNFHNGNYKQALELYSEAIRLNPECS-ASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARKTESALNTISMAYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSR--KGALSVDLNDGLRPGDFVRVGSEFSTAVGGQFFD-----GFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEPAMKALEAVLAEIPDNQEALVFLGVLHANN-KQRQPALSKFKRALELNP 1491
            P ++D+  +  + IPIR +    ++ +E++ +E+P T  + L+ V+K E A L +W   A+ Y  ++Q A+   +     I+E+     E    DDR R F    I  L A A +      K  +   R+   + A +  T + +VDN+  +TW+G+G+  L    L +A++FF+   K+     PA LG AAV +   NY  A ++Y+EAIRL P+ S A  RVGFGL CY+LGQ+ RA+AA ARALD+D +NV+A+VG+A+L++      ++D     E A+  +SMA  +D  NA V NHLANHYFW W+P+  TV + +GS+  KG+ S+ L++G    D VR+G EF T V     D     G + ++++ + G +   +K++KKD+ +V+ LA  AY +T   EI+AES F  ARV+H  G + +A  +Y  +C L P   PA++G+AQ+LVY+ + EPA   L+ VL       +AL  LG+L   + ++ Q  L+  ++A++L+P
Sbjct:   15 PDEEDDTDDPSLIIPIRSSGKDGEKFIEIFPEEIPDTKSSSLMQVMKDENADLGVWADAALHYVKHKQHAQDSAQ-----ILEAGCERAETGTKDDRVRIFAAAGIAHLTA-AQEGGGGGDKRAENDLREELISKADNRFTLSSKVDNLYPMTWMGRGMLNLSANRLKQARFFFDTTLKECGKVLPALLGLAAVCYLEENYAAAQQMYAEAIRLYPKKSGAPTRVGFGLACYRLGQVDRAKAAFARALDMDGENVEAMVGAAVLDMMNLDETSNDFNSHMEKAIKMMSMANLLDHSNAMVQNHLANHYFWKWTPMAGTVEVTQGSKTVKGSQSIPLDEG----DRVRIGMEFETYVDDDSDDADGDGGVTFQMKEAWKGETTSGLKVWKKDYDRVIALAKGAYNSTQVTEIQAESLFFLARVYHVRGMMEDAGKVYDRSCKLNPNLTPARFGLAQVLVYQEQYEPAAAHLQLVLGTSNTATDALATLGLLKVRSGRKTQDGLAHLRKAIDLDP 517
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: A0A662YAT0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAT0_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.390e-86
Identity = 179/514 (34.82%), Postives = 278/514 (54.09%), Query Frame = 1 
Query:   16 DDEQGEGYIR---IPIRGAKQSVEVYTDELPTDLNDLVDVLKAEIAPLDIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDVGRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENAR-KQRPNFPATLGEAAVNFHNGNYKQALELYSEAIRLNPEC--SASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARKTESA--LNTISMAYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSRKGALSVDLNDGLRPGDFVRVGSEFSTAVGGQ--FFDGFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEPAMKALEAVLAEIPDNQEALVFLGVLHANNKQRQPALSKFKRALELNPHLSDAWIAQAQV 1527
            DDE+  G  R   IP++ + Q+VEV+ DELP D+ND++D+L+AE+APLD+WL+FAVEYY QG    F+ IL    E   P  E +Y D+  A  + RI+  NALA+ +V       D   R+  +  A+     ADR+D+   +T VGK + ++ + E DRA  F ++     + N PA LG+A + +    YK+A +LY EAI+L+P    +A++R+ F  CCY LG + +A+A M     LD  NV A++ +A+ +L++        + + E +  +  I  A+ +D  + TVLNHLANHYF  W PL  TV++  GS   A S D++  + PG  + +G ++   +           L L   Y   S     + +KD+ K+  LA  A+ +T  PEI++ESC+L  R  HA GK  +A   Y  A  LWP+F    +G+AQ+     +   A   LE      P+N E L  LG ++    ++  A+   +R +EL P   +A +  A++
Sbjct:    3 DDEEAGGVQRALLIPVKNSTQAVEVFADELPDDVNDIIDILRAEVAPLDVWLQFAVEYYNQGHVNQFQEILAVASE---PGIEEIYKDN--ASRMCRIKFFNALASHAVTAMWNEEDEKKREAISQRAVGFFQRADRLDHQHPMTLVGKALMFMAKNEDDRADRFLKSVLISNKTNLPALLGKALLLYRKKQYKEAKKLYLEAIKLHPRSPQAANMRMCFAYCCYHLGAVEKARAVMRYTASLDETNVDAVIANALWQLASLSREERAASIRDEGSRFMMLIHHAHAIDKTSPTVLNHLANHYFSQWIPLPCTVSVVRGSAVVATSKDISSEVAPGQIICLGDKYVAYISRDEAAVSASGLILDGPYREESATATNIARKDYDKMFTLAGNAFHSTKIPEIRSESCYLMGRGCHAQGKYKDAYSYYFNAGRLWPKFVLPWFGLAQMYYERKEFTKAASYLEKANKAYPENVEVLSLLGDVYGKLGKKDEAVVLLRRVVELEPGNVEALVGTAEL 511
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: A0A0P1B4U7_PLAHL (TPR-containing nuclear phosphoprotein that regulates K( ) uptake n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4U7_PLAHL)

HSP 1 Score: 297 bits (761), Expect = 2.900e-86
Identity = 179/503 (35.59%), Postives = 273/503 (54.27%), Query Frame = 1 
Query:   40 IRIPIRGAKQSVEVYTDELPTDLNDLVDVLKAEIAPLDIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDVGRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENAR-KQRPNFPATLGEAAVNFHNGNYKQALELYSEAIRLNPEC--SASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARKTESA--LNTISMAYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSRKGALSVDLNDGLRPGDFVRVGSEFSTAVGGQ--FFDGFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEPAMKALEAVLAEIPDNQEALVFLGVLHANNKQRQPALSKFKRALELNPHLSDAWIAQAQV 1527
            + IP++ ++Q+VEV+ DELP D+ND++D+L+AE+APLD+WL+FAVEYY QG    F+ IL    E   P  E +Y D+  A  V RI+   ALA+ +V       D   R+  +  A+     ADR+D+   +T VGK + ++ + E DRA  F ++     + N PA LG+A + +    YK A +LY EAI+L+P    +A++R+ F  CCY LG I +A+A M     LD  NV A + SA+ +L++        + + ES+  +  I  A+ +D  N TVLNHLANHYF  W PL  TV++  GS   A S D++  + PG  + +G ++   +  Q        L+L   Y   S     + +KD+ K+  LA  A+ +T   EI++ESC+L  R  HA GK  +A   Y  A  LWP+F    +G+AQ+     +   A   LE      P+N E L  LG ++    ++  A+   +R +EL P   +A I  A++
Sbjct:   12 LLIPVKNSEQAVEVFVDELPDDVNDIIDILRAEVAPLDVWLQFAVEYYNQGHVAQFQEILAVASE---PGIEEIYKDN--ASRVCRIKFFIALASHAVNAMWNEEDDKKREAISQRAVGFFQRADRLDHQHPMTLVGKALMFMAKNEDDRADRFIKSVLISNKTNLPAILGKALLLYRKKQYKDAKKLYLEAIKLHPRSPQAANMRMCFAYCCYHLGAIEKARAVMRYTASLDETNVDARIASALWQLASQSREERAVSIRDESSRFMMMIHHAHAIDKTNPTVLNHLANHYFSQWIPLPCTVSVVRGSAFVATSKDISSEVSPGQIICIGDKYVAYISRQEDAVSSSGLKLDGPYRDESATATNIARKDYDKMFTLAGNAFHSTKIAEIRSESCYLMGRGCHAQGKYKDAYSYYFNAGRLWPKFVLPWFGLAQIYYERKEFTKAASYLEKANKAYPENVEILSLLGDVYGKLGKKDEAVVLLRRVVELEPGNVEALIGTAEL 509
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: A0A484DS79_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DS79_BRELC)

HSP 1 Score: 296 bits (758), Expect = 1.040e-85
Identity = 174/503 (34.59%), Postives = 276/503 (54.87%), Query Frame = 1 
Query:   40 IRIPIRGAKQSVEVYTDELPTDLNDLVDVLKAEIAPLDIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDVGRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENAR-KQRPNFPATLGEAAVNFHNGNYKQALELYSEAIRLNPEC--SASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARKTESA--LNTISMAYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSRKGALSVDLNDGLRPGDFVRVGSEFSTAVGGQ--FFDGFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEPAMKALEAVLAEIPDNQEALVFLGVLHANNKQRQPALSKFKRALELNPHLSDAWIAQAQV 1527
            + IP++ ++Q+VEV+ DELP D+ND++D+L+AE+APL +WL+FAVEYY QG    F+ IL    E   P  E +Y D+  A  + RI+   ALA+ +V       D   R+  +  A+     ADR+D+   +T VGK + ++ + E DRA  F ++     + N PA LG+A + +    YK A +LY EAI+L+P    +A++R+ F  CCY LG + +A+A M     LD  NV A++ +A+ +L++        + + ES+  +  I  A+ +D  N TVLNHLANHYF  W PL  +V++  GS     S D+++ + PG  + +G ++   +  Q        L+L   Y   S     + +KD+ K+  LA TA+ +T  PEI++ESC+L  R  HA G+  +A   Y  A  LWP+F    +G+AQ+     +L  A   LE      P+N E L  L  ++    +++ A+   +R +EL P   +A I  A++
Sbjct:   14 LLIPVKNSEQAVEVFVDELPDDVNDIIDILRAEVAPLTVWLQFAVEYYNQGHVAQFQEILAVASE---PGIEEIYKDN--ASRMCRIKFFVALASHAVNAMWNEEDEKKRETISQRAVGFFQRADRLDHQHPMTLVGKALMFMAKNEDDRADRFIKSVLISNKTNLPAILGKALLLYRKKQYKDAKKLYLEAIKLHPRSPQAANMRMCFAYCCYHLGAVEKARAVMRYTASLDETNVDAVIANALWQLASQSREERAVSIRDESSRFMMMIHHAHAIDKTNPTVLNHLANHYFSQWIPLPCSVSVVRGSAVVTTSKDISNEVSPGQIICIGDKYVAYISRQDDAVSSSGLKLDGPYRDESASTTNIARKDYDKMFTLAGTAFHSTKIPEIRSESCYLMGRGCHAQGRYKDAYSYYFNAGRLWPKFVLPWFGLAQMYYERKELTKAASYLEKANKAYPENVEILSLLADVYGKLGKKEGAVGLLRRVVELEPGNVEALIGTAEL 511
[Close]
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Match: A0A2D4BFL7_PYTIN (RNA polymerase-associated protein CTR9 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFL7_PYTIN)

HSP 1 Score: 296 bits (757), Expect = 1.080e-85
Identity = 174/503 (34.59%), Postives = 277/503 (55.07%), Query Frame = 1 
Query:   40 IRIPIRGAKQSVEVYTDELPTDLNDLVDVLKAEIAPLDIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDVGRIRILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVGKGVFYLCQGELDRAKYFFENA-RKQRPNFPATLGEAAVNFHNGNYKQALELYSEAIRLNPEC--SASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQALVGSAILELSTARAGTHDGARKTESALNTISM--AYHVDDKNATVLNHLANHYFWTWSPLKVTVNIKEGSRKGALSVDLNDGLRPGDFVRVGSEFSTAVGGQ--FFDGFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAESCFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEPAMKALEAVLAEIPDNQEALVFLGVLHANNKQRQPALSKFKRALELNPHLSDAWIAQAQV 1527
            + IP++ + Q+VEV++DELP D+ND++D+L+AE+APLD+WL+FAVEYY QG  + F+ IL    E   P  E +Y+ +  A  + RI+  NALA+ +V       D   ++  +  A+ +   ADR+D    +T VGK + ++ + E DRA+ F ++     + N PA L +A + +    Y +A +LY EAI+L+P    ++ +R+ F  CC++ G + +A+A M  A  LD  NV A++ SA+ +L++        + + E++   + M  A+ +D  N TVLNHLANHYF  W PL  TV++  GS   A S D++  L PG  + +G  +   +  +        + L   Y   S   + + +K++ K+  LA +A+ +T  PEI++ESC+L  R  HA GK  EA   Y  A  LWP F    +G+AQ+ V   +   A   LE V    P+N E L  LG  +    + + A+   +R +EL P   DA I  A++
Sbjct:    9 LLIPVKNSDQAVEVFSDELPDDVNDIIDILRAELAPLDVWLQFAVEYYXQGCISQFQEILGVASE---PGIESIYSXN--ASRLXRIKFFNALASHAVNAMWHEDDEKKKEAISQRAVGYFQRADRLDQQHPMTLVGKALMFMAKNEDDRAERFLKSVLMSNKKNLPALLAKALLLYRKKKYGEAKKLYLEAIKLHPRSPQASRMRMCFAYCCHREGSVDKARAVMRYAASLDDTNVDAVIASALWQLASLSREQRAKSIRDETSRFMMMMHHAHAIDKTNPTVLNHLANHYFAQWVPLPCTVSVVRGSAVVATSKDISSELSPGQIICLGERYVAYISKKPGSVSSSGIVLDGPYRDESATAVTVARKNYXKMFTLAGSAFHSTKIPEIRSESCYLMGRGCHAEGKYKEAYSYYFNAGRLWPNFVLPWFGLAQMYVERKEYMKAATYLEKVNKAYPENVEVLALLGHTYGKLGKTEEAVVLLRRVVELEPGNVDALIGTAEL 506
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60345.13575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ11_ECTSI5.330e-29080.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0E0_9STRA7.080e-11645.78Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2P4XRV6_9STRA3.680e-9134.24RNA polymerase-associated protein CTR9 (Fragment) ... [more]
H3GJ62_PHYRM1.780e-8835.20Uncharacterized protein n=21 Tax=Phytophthora TaxI... [more]
A0A421FQJ2_9STRA2.530e-8735.09Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A448ZS64_9STRA2.890e-8736.65Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A662YAT0_9STRA1.390e-8634.82Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A0P1B4U7_PLAHL2.900e-8635.59TPR-containing nuclear phosphoprotein that regulat... [more]
A0A484DS79_BRELC1.040e-8534.59Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2D4BFL7_PYTIN1.080e-8534.59RNA polymerase-associated protein CTR9 n=1 Tax=Pyt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60345contigH-elongata_contig60345:1075..3507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score834.7
Seed ortholog evalue2.3e-239
Seed eggNOG ortholog2880.D7FJ11
Preferred nameCTR9
KEGG koko:K08399,ko:K15176
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000122,GO:0000278,GO:0000414,GO:0000416,GO:0000428,GO:0000785,GO:0000988,GO:0000989,GO:0000993,GO:0001015,GO:0001076,GO:0001098,GO:0001099,GO:0001701,GO:0001704,GO:0001706,GO:0001711,GO:0001824,GO:0001825,GO:0001826,GO:0001829,GO:0001832,GO:0001932,GO:0001934,GO:0002237,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006282,GO:0006325,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006360,GO:0006362,GO:0006366,GO:0006368,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006513,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007259,GO:0007275,GO:0007276,GO:0007281,GO:0007369,GO:0007399,GO:0007406,GO:0007492,GO:0008023,GO:0008150,GO:0008152,GO:0008213,GO:0008285,GO:0009058,GO:0009059,GO:0009302,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010033,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010721,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016591,GO:0016593,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030880,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031440,GO:0031441,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033184,GO:0033523,GO:0033993,GO:0034097,GO:0034243,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034968,GO:0035327,GO:0035556,GO:0035987,GO:0036211,GO:0040007,GO:0042127,GO:0042169,GO:0042221,GO:0042325,GO:0042327,GO:0043009,GO:0043144,GO:0043170,GO:0043175,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043414,GO:0043628,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0044877,GO:0045142,GO:0045165,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045943,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048589,GO:0048598,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048831,GO:0048856,GO:0048869,GO:0050684,GO:0050686,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0051052,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060260,GO:0060284,GO:0060795,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070063,GO:0070102,GO:0070647,GO:0070741,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071354,GO:0071396,GO:0071704,GO:0071840,GO:0072091,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0097696,GO:0098727,GO:0098781,GO:0099122,GO:0140110,GO:1900363,GO:1900364,GO:1901360,GO:1901362,GO:1901363,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1902692,GO:1903047,GO:1903311,GO:1903312,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1905269,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000113,GO:2000142,GO:2000177,GO:2000178,GO:2000241,GO:2000242,GO:2000647,GO:2000653,GO:2000819,GO:2001020,GO:2001141,GO:2001160,GO:2001162,GO:2001163,GO:2001165,GO:2001166,GO:2001168,GO:2001173,GO:2001207,GO:2001209,GO:2001252,GO:2001253,GO:2001255
EggNOG free text desc.regulation of histone H3-K4 methylation
EggNOG OGsCOG0457@1,KOG2002@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-07_004840.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko04030
Hectar predicted targeting categoryother localisation
Exons5
Model size1536
Cds size1536
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60345.13575.1prot_H-elongata_contig60345.13575.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60345 1075..3507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.8732615-CDS-H-elongata_contig60345:1074..12451622930977.8732615-CDS-H-elongata_contig60345:1074..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 1075..1245 +
1691679648.2860951-CDS-H-elongata_contig60345:1074..12451691679648.2860951-CDS-H-elongata_contig60345:1074..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 1075..1245 +
1622930977.8913846-CDS-H-elongata_contig60345:1469..19031622930977.8913846-CDS-H-elongata_contig60345:1469..1903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 1470..1903 +
1691679648.2974432-CDS-H-elongata_contig60345:1469..19031691679648.2974432-CDS-H-elongata_contig60345:1469..1903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 1470..1903 +
1622930977.9064057-CDS-H-elongata_contig60345:2262..27941622930977.9064057-CDS-H-elongata_contig60345:2262..2794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 2263..2794 +
1691679648.306067-CDS-H-elongata_contig60345:2262..27941691679648.306067-CDS-H-elongata_contig60345:2262..2794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 2263..2794 +
1622930977.925832-CDS-H-elongata_contig60345:2947..32081622930977.925832-CDS-H-elongata_contig60345:2947..3208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 2948..3208 +
1691679648.31617-CDS-H-elongata_contig60345:2947..32081691679648.31617-CDS-H-elongata_contig60345:2947..3208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 2948..3208 +
1622930977.9518726-CDS-H-elongata_contig60345:3369..35071622930977.9518726-CDS-H-elongata_contig60345:3369..3507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 3370..3507 +
1691679648.3280816-CDS-H-elongata_contig60345:3369..35071691679648.3280816-CDS-H-elongata_contig60345:3369..3507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60345 3370..3507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60345.13575.1

>prot_H-elongata_contig60345.13575.1 ID=prot_H-elongata_contig60345.13575.1|Name=mRNA_H-elongata_contig60345.13575.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=512bp
MSPRDDDEQGEGYIRIPIRGAKQSVEVYTDELPTDLNDLVDVLKAEIAPL
DIWLRFAVEYYRQGAETHFRGILNDIVESLTPETERLYADDRRAFDVGRI
RILNALAADSVKQASKCTDRSTRDRQNAAALSHLTSADRVDNMSELTWVG
KGVFYLCQGELDRAKYFFENARKQRPNFPATLGEAAVNFHNGNYKQALEL
YSEAIRLNPECSASVRVGFGLCCYKLGQISRAQAAMARALDLDPQNVQAL
VGSAILELSTARAGTHDGARKTESALNTISMAYHVDDKNATVLNHLANHY
FWTWSPLKVTVNIKEGSRKGALSVDLNDGLRPGDFVRVGSEFSTAVGGQF
FDGFSLELRDEYTGPSGDEIKLFKKDFRKVMELASTAYENTTAPEIKAES
CFLKARVHHASGKLNEAKLLYTEACNLWPQFPPAQYGMAQLLVYEGKLEP
AMKALEAVLAEIPDNQEALVFLGVLHANNKQRQPALSKFKRALELNPHLS
DAWIAQAQVKSV
back to top

mRNA from alignment at H-elongata_contig60345:1075..3507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60345.13575.1 ID=mRNA_H-elongata_contig60345.13575.1|Name=mRNA_H-elongata_contig60345.13575.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2433bp|location=Sequence derived from alignment at H-elongata_contig60345:1075..3507+ (Himanthalia elongata Himel1 dioecious)
ATGTCACCTCGCGACGATGATGAACAGGGTGAAGGCTACATAAGGATTCC
TATTCGAGGTGCTAAACAGTCTGTCGAAGTCTACACGGATGAACTACCTA
CGGACCTCAATGACCTTGTGGATGTCCTCAAGGCGGAAATTGCCCCACTG
GACATCTGGCTGCGCTTTGCAGTGAGTTCATATGAGAGCTCTGATTTCAC
CGATATATCTCATCGAGTCATTTTTTCTTAATTTAGTCCTTTGACTCAAG
ATAGTTTGAATGAGTCCATCCTGGAGGCAGGATGTTTATGTAAACCAACG
CTCCAAACTCTGTTGACCCTGTTGTATACAATCCGTCGTGATTTTCATGT
CGCCATGGGCTGTTCCCCGTGGCCATCGCAACTCGATCTCGACAGGTGGA
ATATTATCGGCAAGGTGCCGAAACCCATTTTCGAGGAATCTTGAATGACA
TCGTCGAATCTCTCACTCCAGAAACGGAACGGTTATACGCGGATGATAGG
CGGGCGTTTGATGTGGGTCGCATCCGCATCTTGAACGCCCTTGCGGCGGA
CTCCGTCAAGCAAGCTTCCAAATGTACCGACAGGAGCACAAGGGATCGCC
AAAATGCTGCTGCACTCAGTCACCTCACTAGCGCAGACCGCGTAGACAAC
ATGTCCGAGCTGACCTGGGTGGGCAAAGGTGTGTTCTATCTGTGTCAGGG
AGAGCTGGACCGCGCCAAGTACTTCTTTGAAAACGCCCGCAAGCAGAGGC
CGAACTTCCCAGCAACCCTTGGCGAGGCAGCAGTAAACTTCCACAATGGC
AACTACAAGCAAGCCCTCGAGCTATATAGGTGTGTTATTATTAGTTAACC
CTCCGACCATCCACACCTTCCTAGCCCCATGAAAGATGTAATCCAGGGGG
CCAACTATCGTCAGGTTCGAATGTTTACATTACTACCTTTGAGCACAAAA
TCGTCACATGTTTTGTGACATTCTGATTTAACATCAGGAGGCATGTTTGT
CAGGGCAGCTCTCCCTCTGATATTTATCAAAGATGAATGATCCTTGATGT
CTACACAGCACACTGCAACTTTCCCCTGGCAAATGTCCACGGCATCGAGA
CTTGGATACTTACTCGTAAAGGGATTTCTATTCAAGAGGTTGTCTCTTGG
CCTTGTCCTCGTAACGATTCTGATCGTGTTCATTGCAGCGAGGCAATTCG
ACTGAATCCTGAATGCTCTGCATCAGTTCGAGTAGGCTTCGGACTCTGCT
GCTACAAGCTAGGGCAAATCTCCCGTGCGCAAGCCGCAATGGCGCGTGCT
CTTGATTTAGACCCTCAAAACGTGCAAGCGCTGGTGGGTAGTGCAATCTT
GGAGTTATCAACGGCCAGAGCTGGAACACATGACGGCGCACGGAAAACAG
AAAGCGCGCTCAACACGATAAGTATGGCGTATCACGTAGATGATAAAAAC
GCCACAGTCCTGAATCACCTAGCGAACCACTATTTTTGGACGTGGTCGCC
GCTGAAGGTCACGGTAAACATAAAAGAAGGATCTCGCAAAGGGGCTCTCA
GCGTAGACCTCAATGATGGTTTGAGACCAGGAGACTTCGTCCGCGTGGGG
TCCGAATTTTCAACAGCAGTGGGCGGGCAATTCTTCGACGGCTTCAGTCT
CGAACTGCGCGACGAGTACACGGGGCCATCCGGAGATGAGATCAAGCTCT
TCAAGAAAGACTTCCGCAAAGTGAGACGATTCTGTGGGCTACTAAATACT
GTTACGTAACCTGCCGTGCCTGTGATGGTATATATATAGGTACGAAGTAG
CACGCACTTGTTGGAAGAATTCGCTGAAAAAATGTTAAAACGGGGATTCG
TGGTAACTCTTATGTGCATCCAGGTTATGGAACTGGCAAGTACTGCCTAC
GAGAACACCACTGCACCAGAAATCAAGGCGGAGAGCTGCTTCCTGAAGGC
ACGGGTGCACCATGCTTCAGGAAAACTCAACGAGGCGAAACTTCTGTACA
CGGAAGCGTGCAACCTTTGGCCTCAGTTTCCTCCTGCGCAGTACGGTATG
GCGCAACTGCTGGTGTACGAAGGCAAACTTGAGCCAGCTATGAAGGCGCT
GGAGGCCGTTTTGGCGGAAATCCCGGACAACCAGGTGCAGCGTGTGCACA
GATGAAAACCAGTACGGTTCTTACATAGATTCGGAAGTAACCGGCTAGCC
TTGTGTTTTTATCCTCTCTTGCTTCTTCTGGGCTTGAATGCTGTCGCTGT
TATCTCACGCGCAACAGCGGCGGCATTTTGCAAACACTCGAACAGGAGGC
ACTCGTTTTTCTTGGCGTTCTGCACGCCAATAACAAGCAGCGCCAGCCAG
CGCTTTCAAAGTTCAAGCGCGCATTAGAGCTAAACCCTCATCTGTCGGAT
GCGTGGATCGCACAAGCGCAGGTAAAATCAGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig60345:1075..3507+

>mRNA_H-elongata_contig60345.13575.1 ID=mRNA_H-elongata_contig60345.13575.1|Name=mRNA_H-elongata_contig60345.13575.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3072bp|location=Sequence derived from alignment at H-elongata_contig60345:1075..3507+ (Himanthalia elongata Himel1 dioecious)
ATGTCACCTCGCGACGATGATGAACAGGGTGAAGGCTACATAAGGATTCC
TATTCGAGGTGCTAAACAGTCTGTCGAAGTCTACACGGATGAACTACCTA
CGGACCTCAATGACCTTGTGGATGTCCTCAAGGCGGAAATTGCCCCACTG
GACATCTGGCTGCGCTTTGCAATGTCACCTCGCGACGATGATGAACAGGG
TGAAGGCTACATAAGGATTCCTATTCGAGGTGCTAAACAGTCTGTCGAAG
TCTACACGGATGAACTACCTACGGACCTCAATGACCTTGTGGATGTCCTC
AAGGCGGAAATTGCCCCACTGGACATCTGGCTGCGCTTTGCAGTGGAATA
TTATCGGCAAGGTGCCGAAACCCATTTTCGAGGAATCTTGAATGACATCG
TCGAATCTCTCACTCCAGAAACGGAACGGTTATACGCGGATGATAGGCGG
GCGTTTGATGTGGGTCGCATCCGCATCTTGAACGCCCTTGCGGCGGACTC
CGTCAAGCAAGCTTCCAAATGTACCGACAGGAGCACAAGGGATCGCCAAA
ATGCTGCTGCACTCAGTCACCTCACTAGCGCAGACCGCGTAGACAACATG
TCCGAGCTGACCTGGGTGGGCAAAGGTGTGTTCTATCTGTGTCAGGGAGA
GCTGGACCGCGCCAAGTACTTCTTTGAAAACGCCCGCAAGCAGAGGCCGA
ACTTCCCAGCAACCCTTGGCGAGGCAGCAGTAAACTTCCACAATGGCAAC
TACAAGCAAGCCCTCGAGCTATATAGGTGGAATATTATCGGCAAGGTGCC
GAAACCCATTTTCGAGGAATCTTGAATGACATCGTCGAATCTCTCACTCC
AGAAACGGAACGGTTATACGCGGATGATAGGCGGGCGTTTGATGTGGGTC
GCATCCGCATCTTGAACGCCCTTGCGGCGGACTCCGTCAAGCAAGCTTCC
AAATGTACCGACAGGAGCACAAGGGATCGCCAAAATGCTGCTGCACTCAG
TCACCTCACTAGCGCAGACCGCGTAGACAACATGTCCGAGCTGACCTGGG
TGGGCAAAGGTGTGTTCTATCTGTGTCAGGGAGAGCTGGACCGCGCCAAG
TACTTCTTTGAAAACGCCCGCAAGCAGAGGCCGAACTTCCCAGCAACCCT
TGGCGAGGCAGCAGTAAACTTCCACAATGGCAACTACAAGCAAGCCCTCG
AGCTATATAGCGAGGCAATTCGACTGAATCCTGAATGCTCTGCATCAGTT
CGAGTAGGCTTCGGACTCTGCTGCTACAAGCTAGGGCAAATCTCCCGTGC
GCAAGCCGCAATGGCGCGTGCTCTTGATTTAGACCCTCAAAACGTGCAAG
CGCTGGTGGGTAGTGCAATCTTGGAGTTATCAACGGCCAGAGCTGGAACA
CATGACGGCGCACGGAAAACAGAAAGCGCGCTCAACACGATAAGTATGGC
GTATCACGTAGATGATAAAAACGCCACAGTCCTGAATCACCTAGCGAACC
ACTATTTTTGGACGTGGTCGCCGCTGAAGGTCACGGTAAACATAAAAGAA
GGATCTCGCAAAGGGGCTCTCAGCGTAGACCTCAATGATGGTTTGAGACC
AGGAGACTTCGTCCGCGTGGGGTCCGAATTTTCAACAGCAGTGGGCGGGC
AATTCTTCGACGGCTTCAGTCTCGAACTGCGCGACGAGTACACGGGGCCA
TCCGGAGATGAGATCAAGCTCTTCAAGAAAGACTTCCGCAAACGAGGCAA
TTCGACTGAATCCTGAATGCTCTGCATCAGTTCGAGTAGGCTTCGGACTC
TGCTGCTACAAGCTAGGGCAAATCTCCCGTGCGCAAGCCGCAATGGCGCG
TGCTCTTGATTTAGACCCTCAAAACGTGCAAGCGCTGGTGGGTAGTGCAA
TCTTGGAGTTATCAACGGCCAGAGCTGGAACACATGACGGCGCACGGAAA
ACAGAAAGCGCGCTCAACACGATAAGTATGGCGTATCACGTAGATGATAA
AAACGCCACAGTCCTGAATCACCTAGCGAACCACTATTTTTGGACGTGGT
CGCCGCTGAAGGTCACGGTAAACATAAAAGAAGGATCTCGCAAAGGGGCT
CTCAGCGTAGACCTCAATGATGGTTTGAGACCAGGAGACTTCGTCCGCGT
GGGGTCCGAATTTTCAACAGCAGTGGGCGGGCAATTCTTCGACGGCTTCA
GTCTCGAACTGCGCGACGAGTACACGGGGCCATCCGGAGATGAGATCAAG
CTCTTCAAGAAAGACTTCCGCAAAGTTATGGAACTGGCAAGTACTGCCTA
CGAGAACACCACTGCACCAGAAATCAAGGCGGAGAGCTGCTTCCTGAAGG
CACGGGTGCACCATGCTTCAGGAAAACTCAACGAGGCGAAACTTCTGTAC
ACGGAAGCGTGCAACCTTTGGCCTCAGTTTCCTCCTGCGCAGTACGGTAT
GGCGCAACTGCTGGTGTACGAAGGCAAACTTGAGCCAGCTATGAAGGCGC
TGGAGGCCGTTTTGGCGGAAATCCCGGACAACCAGGTTATGGAACTGGCA
AGTACTGCCTACGAGAACACCACTGCACCAGAAATCAAGGCGGAGAGCTG
CTTCCTGAAGGCACGGGTGCACCATGCTTCAGGAAAACTCAACGAGGCGA
AACTTCTGTACACGGAAGCGTGCAACCTTTGGCCTCAGTTTCCTCCTGCG
CAGTACGGTATGGCGCAACTGCTGGTGTACGAAGGCAAACTTGAGCCAGC
TATGAAGGCGCTGGAGGCCGTTTTGGCGGAAATCCCGGACAACCAGGAGG
CACTCGTTTTTCTTGGCGTTCTGCACGCCAATAACAAGCAGCGCCAGCCA
GCGCTTTCAAAGTTCAAGCGCGCATTAGAGCTAAACCCTCATCTGTCGGA
TGCGTGGATCGCACAAGCGCAGGTAAAATCAGTGGAGGCACTCGTTTTTC
TTGGCGTTCTGCACGCCAATAACAAGCAGCGCCAGCCAGCGCTTTCAAAG
TTCAAGCGCGCATTAGAGCTAAACCCTCATCTGTCGGATGCGTGGATCGC
ACAAGCGCAGGTAAAATCAGTG
back to top