prot_H-elongata_contig60332.13574.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60332.13574.1
Unique Nameprot_H-elongata_contig60332.13574.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.160e-18
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 0
Query:   15 WIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDGTRLRVQCIGNIDVVFHGRNDERMTLCDVSHVPDLKFNLVSFHKAQQTHVIIL 102
            WIGDS ++ H T+D + +YN R P   +  +   DG +L+ +C G++DVVFH R D  +T+ D++ VPDL F+LVS +  Q+TH ++L
Sbjct:   16 WIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETHDLLL 103          
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.580e-13
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 0
Query:   11 RNDFWIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDGTRLRVQCIGNIDVVFH-----GRNDERMTLCDVSHVPDLKFNLVSFHKAQQTHVIIL 102
            R  FW  DSGA+    + + +M+++R  P GK  I   +GT LRVQC+G +++ FH     G  D R+ + DV  VP + FNL S H  Q+   I+L
Sbjct:  637 REKFWA-DSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQRKQRIVL 732          
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A835CFI5_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CFI5_9FABA)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-7
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 0
Query:   15 WIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDGTRLRVQCIGNIDVVFHGRNDERMTLCDVSHVPDLKFNLVS-------------FH------KAQQTHVIIL 102
            W  DSGAS H+TNDAS +  VR P  G+  + T++GT L +Q +G  ++     N + + L  + HVP +  NL+S             FH      K+Q+TH ++L
Sbjct:  310 WYPDSGASSHLTNDASNL-QVRQPYNGQELVHTANGTGLPIQSVGYSNI--SSSNSQILHLSQLYHVPSVSKNLISVSKFAKDNRVYFEFHANEFSIKSQETHQVLL 413          
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A803LD36_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LD36_CHEQI)

HSP 1 Score: 55.5 bits (132), Expect = 9.740e-7
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0
Query:   13 DFWIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDGTRLRVQCIGNIDVVFHGRNDERMTLCDVSHVPDLKFNLVSFHK 93
            D W+ DSGA+ H+ +D + ++   TP L  + I   DG+R+ V+  G + +     NDE ++L +V HVPD KFNL+S HK
Sbjct:  275 DKWLLDSGATDHIFSDIA-LFAKLTPVLTPYYITIPDGSRILVKNTGVVKL-----NDE-ISLLNVLHVPDFKFNLISVHK 348          
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A834U2Q9_9FABA (F-box protein interaction domain protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834U2Q9_9FABA)

HSP 1 Score: 55.5 bits (132), Expect = 1.040e-6
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   12 NDFWIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDGTRLRVQCIGNIDVVFHGRNDERMTLCDVSHVPDLKFNLVSFHKAQQ 96
            ND WI DSGAS HMT +AS +++   P     ++  +DGT  +V  IG++ +       + +TL +V HVP L  NL+S  K  Q
Sbjct:   92 NDSWIVDSGASDHMTGNAS-LFSTLGPCKTSLQVKIADGTMAKVLGIGSVKI------SDTITLLNVLHVPTLACNLLSISKLTQ 169          
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A7D9IJR2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IJR2_PARCT)

HSP 1 Score: 54.7 bits (130), Expect = 1.710e-6
Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 0
Query:    1 MTFAAQSQDARNDFWIGDSGASCHMTNDAS---KMYNVRTPPLGKHEIMTSDGTRLRVQCIGNIDVVFHGRNDERMTLC---DVSHVPDLKFNLVSFHKAQQT 97
            +  A  S + R + WI DSGA+CHM NDAS   K++N+  P     ++  +DG  ++    G +       N ++   C   DV +VP L  NLVS  KA ++
Sbjct:   41 VNHAFSSVNGRTNTWIIDSGATCHMCNDASQFVKLHNLEKP----EDVTLADGHVVKATGRGVVKTKIESPNGQKGKSCVLQDVLYVPSLSNNLVSVSKATKS 139          
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A2I0VFZ4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VFZ4_9ASPA)

HSP 1 Score: 54.3 bits (129), Expect = 2.630e-6
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 0
Query:    5 AQSQDARNDFWIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDGTRLRVQCIGNIDVVFHGRNDERMTLCDVSHVPDLKFNLVSFHK 93
            A S  A N+ W  DSGAS H+TN    + ++ +P  G   I   DG  + +   G   +    R   ++TL  + H+P+LK+NL+S  K
Sbjct:  309 AASDSATNNNWFLDSGASAHLTNSLDNL-SIASPYQGSDSITIGDGRSMSIANSGTGSLPIPAR---KLTLDQILHIPELKYNLLSISK 393          
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A834WYN7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WYN7_9FABA)

HSP 1 Score: 53.5 bits (127), Expect = 4.710e-6
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 0
Query:   15 WIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDGTRLRVQCIGNIDVVFHGRNDERMTLCDVSHVPDLKFNLVSFHKAQQ 96
            W  DSGAS H+TNDAS +++   P  G  ++  ++GT L +  +G  ++  H  + + ++L ++ HVP +  NL+S  K  Q
Sbjct:  322 WYPDSGASHHITNDASNLHS-HQPYTGSEQVHAANGTGLVIHNVGQSEI--HTNSSKILSLKNLFHVPSVTKNLLSVSKCAQ 400          
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A834T3C8_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834T3C8_9FABA)

HSP 1 Score: 52.4 bits (124), Expect = 1.120e-5
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0
Query:   15 WIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDGTRLRVQCIGNIDVVFHGRNDERMTLCDVSHVPDLKFNLVSFHKAQQ 96
            WI DSGAS HMT +AS +++   P     ++  +DGT  +V  IG+I +         +TL +V +VP L  NL+S  K  Q
Sbjct:   74 WIVDSGASDHMTGNAS-LFSTLAPCASSLQVKIADGTMAKVSAIGSIKI------STTLTLMNVLYVPALACNLLSISKLTQ 148          
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Match: A0A834WRC4_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WRC4_9FABA)

HSP 1 Score: 52.4 bits (124), Expect = 1.220e-5
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 0
Query:   15 WIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDG--TRLRVQCIGNIDVVFHGRNDERMTLCDVSHVPDLKFNLVSFHK 93
            W  DSGAS H+TNDA+ +   +    G   + T++G  T L +  +GN +V  H +N + + L D+ HVP +  NL+S  K
Sbjct:  320 WYPDSGASSHLTNDATNLQEQQAY-TGPDTVHTANGNATGLSISTVGNSEV--HTQNHKSLLLKDLYHVPSISKNLISVSK 397          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60332.13574.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE6.160e-1843.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE4.580e-1339.18Integrase catalytic domain-containing protein n=5 ... [more]
A0A835CFI5_9FABA1.570e-734.58Retrovirus-related Pol polyprotein from transposon... [more]
A0A803LD36_CHEQI9.740e-740.74Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A834U2Q9_9FABA1.040e-638.82F-box protein interaction domain protein n=1 Tax=S... [more]
A0A7D9IJR2_PARCT1.710e-633.98Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2I0VFZ4_9ASPA2.630e-633.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A834WYN7_9FABA4.710e-634.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A834T3C8_9FABA1.120e-537.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A834WRC4_9FABA1.220e-537.04Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60332contigH-elongata_contig60332:95..400 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60332.13574.1mRNA_H-elongata_contig60332.13574.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60332 95..400 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60332.13574.1 ID=prot_H-elongata_contig60332.13574.1|Name=mRNA_H-elongata_contig60332.13574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MTFAAQSQDARNDFWIGDSGASCHMTNDASKMYNVRTPPLGKHEIMTSDG
TRLRVQCIGNIDVVFHGRNDERMTLCDVSHVPDLKFNLVSFHKAQQTHVI
IL
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