mRNA_H-elongata_contig60322.13571.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60322.13571.1
Unique NamemRNA_H-elongata_contig60322.13571.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 8.820e-131
Identity = 196/271 (72.32%), Postives = 221/271 (81.55%), Query Frame = 1
Query:    1 SSAADFESGGCATLTDMYNIQSGSGPLYTLDDDDNIVDGGGGSV--TGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIESTDDTFHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSEQTWDDD---TCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWKVRGYCTDKSNPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIY 798
            S ++ F  GGCATLTDMYN QSGSGPLY LD  +NIV GGGGS   TG WLLT  L +LD VTLY+HGTS GGD DVLRI+STDD F E+RG+GGSLSF  TTVTSWDTD G ERT Y  GRSFINCV++  +DD    +C G ++K+ GEC MDIIDS MGN+G++D+ESYGLTWKVRG C+D SN E+ D  NVYGDI+GSEIYGMYYGMYSYGH+GG WTDNVMRDNI YGFDPHDD+D+L IA N VYGNGNHGIIASKRCNNVEIY
Sbjct:  405 SDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQ--FDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVYGNGNHGIIASKRCNNVEIY 673          
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 387 bits (994), Expect = 5.060e-128
Identity = 193/302 (63.91%), Postives = 229/302 (75.83%), Query Frame = 1
Query:   10 ADFESGGCATLTDMYNIQSGSGPLYTLDDDDNIVDGGGGSVTGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIESTDDTFHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSE----QTWDDDTCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWKVRGYCTDKS------NPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALVHGEL 885
            A FE GGC TLT MY  Q G GPLY LD+++++V   GG+ TG WLL  +LRV+D  TL +HGT+  GD DVLR+ ST D F EVRGYGG+L F+STTVTSWDTD+G ER    DGRSFINCV++      WD   CDG ++++ GEC MDII S MGN+G++D+ESYGLTWKVRG C          N E+F+  NVYGDI  SEIYGMYYG YSYGH+GG W  N+MRDNIQYGFDPHDD+D+L I+NN VYGNGNHGIIASKRCNNV+I+ NEVYDGG++AVGIFLHRSSD A VH  +
Sbjct:  191 AYFEGGGCGTLTQMYEAQEGDGPLYVLDENNDVV---GGTPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLSTSDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWD---CDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNV 486          
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 5.810e-116
Identity = 177/297 (59.60%), Postives = 217/297 (73.06%), Query Frame = 1
Query:   10 ADFESGGCATLTDMY------NIQSGSGPLYTLDDDDNIVDGGGGSVTGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIESTDDT-FHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSEQTWDDDTCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWKVRGYCTDKSNPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALVHG 879
            A+ + GGC TL+D+Y      N  +  GP++ LD +D  VD    + TG+WLLT DL V    TLY  G  +GG+C  LRI ST  + F E+RG+GG+L F+ T VTSWD D    + +Y DGRSFI CVSE    +DTC   A  +MGEC MDIIDS MG LGY  SE+YG+TWKVRG+C+D SNP+VFD  NVYGD++GS+I+ MYYGMYS+GH+GG WT+N+M DN QYGFDPHDD+D LIIA N+VY N NHGIIASKRCNNV+IY NEVYDGG +A GIFLHRS DD+ V+G
Sbjct:    4 AEGDGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDR-VDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYG 296          
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 2.270e-113
Identity = 183/290 (63.10%), Postives = 212/290 (73.10%), Query Frame = 1
Query:   25 GGCATLTDMYNIQSG---SGPLYTLDDDDNIVDGGGGSVTGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIESTDDT-FHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSEQTWDD-DTCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWKVRGYCTDKSNPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALVHG 879
            GGCATLTD+Y  Q G    GPL+ LD +DN+V   GGS TG WLL  D+ V +   L +HG   GGD  VLRI+ST    ++E+RG+GGSLSF  T VTSWDTD     T+Y   RSFI CVSE+  D  DTCDG A   MGEC MDII S MG +GY  +ESYG++WKVRGYC++  NPEVF+RT V GDI  S+IYGMYYG YS+GH+GG WT N M DN QYGFDPHDD+DNL IA N V+GNGNHGIIASKRCNNV+I+ N VYDGG+ AVGIFLHRSSDD  V G
Sbjct:  405 GGCATLTDIYTAQGGHNDDGPLFVLDSNDNVV---GGSPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWG 691          
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 7.000e-110
Identity = 177/292 (60.62%), Postives = 212/292 (72.60%), Query Frame = 1
Query:   19 ESGGCATLTDMYNIQ------SGSGPLYTLDDDDNIVDGGGGSVTGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIEST-DDTFHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSEQTWDDDTCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWKVRGYCTDKSNPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALV 873
            E  GC T+TD+YN +      S  GP+Y LDDD   +D   G +T  WLL  +L +      Y  GTS GGDC+ LRI+ST  D FHEVRG+GGSL F+ T VTSWDT +   + +Y +GRSF+NCVSE+   DD C+G A  +MGEC MDII+S +  LGY+DSESYG+TWKVRG+C D SNPEVF+ TNVYGD+ GS+I+ +YYG YSYGH+GG WT+N M DN QYGFDPHDD+D L IA NEVY N NHGIIASKRCNNV+I+ NEV DGG  A GIFLHRSSD A V
Sbjct:  445 EGEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSG-ITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDD-CEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAV 734          
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 1.580e-105
Identity = 163/286 (56.99%), Postives = 202/286 (70.63%), Query Frame = 1
Query:   25 GGCATLTDMYNIQSGSGPLYTLDDDDNIVDGGGGSVTGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIESTDDTFHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSEQTWDDD-TCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWKVRGYCTDKSNPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALVHG 879
            GGC TL  ++  ++G GPLY +D D   V     S TG WLLT +L V D +TL ++G+  GGD D LR+ ST++TF  +R +GGSL F ST V SWDT + S     +DGRS+I+ +SE   D+D TC+G A   MGE  MDI  S +G LGY+DSESYGLTWKVRG+C DKSNPEVFD  NVYG++  S+I+ M +G+Y+YGH+ G+W  N M DN  YGFDPHDD+D L I +NEVY NG HGIIASKRCN V I GNEVY G + + GIFLHRSSDDA+V G
Sbjct:   67 GGCVTLGQIWESRAGKGPLYAVDPDSGNVST---SATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349          
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 3.850e-104
Identity = 163/286 (56.99%), Postives = 202/286 (70.63%), Query Frame = 1
Query:   25 GGCATLTDMYNIQSGSGPLYTLDDDDNIVDGGGGSVTGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIESTDDTFHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSEQTWDDD-TCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWKVRGYCTDKSNPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALVHG 879
            GGC TL  ++  ++G GPLY +D D   V     S TG WLLT +L V D +TL ++G+  GGD D LR+ ST++TF  +R +GGSL F ST V SWDT + S     +DGRS+I+ +SE   D+D TC+G A   MGE  MDI  S +G LGY+DSESYGLTWKVRG+C DKSNPEVFD  NVYG++  S+I+ M +G+Y+YGH+ G+W  N M DN  YGFDPHDD+D L I +NEVY NG HGIIASKRCN V I GNEVY G + + GIFLHRSSDDA+V G
Sbjct:   67 GGCVTLGQIWESRAGKGPLYAVDPDSGNVST---SATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349          
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 8.390e-104
Identity = 167/297 (56.23%), Postives = 205/297 (69.02%), Query Frame = 1
Query:   13 DFESGGCATLTDMYNIQ-----SGSGPLYTLDDDDNIVDGGGGSVTGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIESTDDT-FHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSEQTWDDDTCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWKVRGYCTDKSNPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALVHGEL 885
            D E  GC T+TD+YN +     S  GP++ LDD  N V      ++ +WLLT +L +      Y  G+SIGGDCD LRI+ST  T FHEVR +GGS+ F+ST VTSWDT + + + +Y  GRSF+NCVSE+   +  C G A  +MGEC MDII+S +G LGY+DSESYGLTWKVRG+C D SNP+VFD TNVYG++ GS+I+  YYG YSYGH+GG W +N M DN QYGFDPHDD+D L              IIASKRCNNV+IY NEVYDGG  A GIFLHRSSD A+VH  +
Sbjct:   81 DAEGEGCFTITDLYNFRLESDGSAKGPIFNLDDSYNTVLNPK-VLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGE-VCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNV 363          
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 1.960e-102
Identity = 170/305 (55.74%), Postives = 208/305 (68.20%), Query Frame = 1
Query:   13 DFESGGCATLTDMYNIQ------SGSGPLYTLDDDDNIVDGGGGSVTGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIESTD-DTFHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSEQTWDDDTCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWKVR---------GYCTDKSNPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALVHG 879
            D ES GC TLTD+YN +      S  GPLY LD   + +     SVT +WLL  +L V +    Y  G+  GGDCD LRI+ST  D ++EVRG+GGS+ F  T VTSWDT +   + +Y  GRSF+NCVSE+   + TCDG A  DMGEC MDII+S MG +G++DSESYGLTWKVR         G+C D SNP+VF+ TNVYGDI+ S+I+ MYYG YSYGH+GG WT+N M DN QY            +ANN+VY N NHGIIASKRCNNV+IY N+V DGG +AVGIFLHRSSD+A V+G
Sbjct:   16 DAESEGCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITAPT-SVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGE-TCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYG 306          
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 2.450e-101
Identity = 166/293 (56.66%), Postives = 199/293 (67.92%), Query Frame = 1
Query:   40 LTDMYNIQ------SGSGPLYTLDDDDNIVDGGGGSVTGRWLLTMDLRVLDDVTLYMHGTSIGGDCDVLRIEST-DDTFHEVRGYGGSLSFKSTTVTSWDTDSGSERTSYSDGRSFINCVSEQTWDDDTCDGAASKDMGECTMDIIDSVMGNLGYYDSESYGLTWK--------VRGYCTDKSNPEVFDRTNVYGDIQGSEIYGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNGNHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALV 873
            +TD+YN +      S  GP+Y LDDD   +D   G +T  WLL  +L +      Y  GTS GGDC+ LRI+ST  D FHEVRG+GGSL F+ T VTSWDT +   + +Y  GRSF+NCVSE+   DD C+G A  +MGEC MDII+S +  LGY+DSESYG+TWK        VRG+C D SNPEVFD TNVYGD+ GS+I+ +YYG YSYGH+GG WT+N M DN QYGFDPHDD+D L              IIASKRCNNV+I+ NEV DGG  AVGIFLHRSSDDA V
Sbjct:    1 MTDLYNFRGTEKDGSSKGPVYMLDDDGTKLDIPSG-ITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDD-CEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTR------------IIASKRCNNVKIFENEVRDGGAAAVGIFLHRSSDDAAV 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60322.13571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE8_ECTSI8.820e-13172.32Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G8D9_ECTSI5.060e-12863.91Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FRR8_ECTSI5.810e-11659.60Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE2.270e-11363.10MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LC73_ECTSI7.000e-11060.62Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7FXE5_ECTSI1.580e-10556.99Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI3.850e-10456.99Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D8LRM4_ECTSI8.390e-10456.23Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JGU8_9PHAE1.960e-10255.74MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KWQ2_9PHAE2.450e-10156.66MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60322contigH-elongata_contig60322:1866..3512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.3
Seed ortholog evalue1.3e-104
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size900
Cds size900
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60322.13571.1prot_H-elongata_contig60322.13571.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60322 1866..3512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.5093873-CDS-H-elongata_contig60322:1865..21681622930977.5093873-CDS-H-elongata_contig60322:1865..2168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60322 1866..2168 +
1691679648.1831052-CDS-H-elongata_contig60322:1865..21681691679648.1831052-CDS-H-elongata_contig60322:1865..2168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60322 1866..2168 +
1622930977.5261059-CDS-H-elongata_contig60322:2565..27091622930977.5261059-CDS-H-elongata_contig60322:2565..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60322 2566..2709 +
1691679648.1943483-CDS-H-elongata_contig60322:2565..27091691679648.1943483-CDS-H-elongata_contig60322:2565..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60322 2566..2709 +
1622930977.5377884-CDS-H-elongata_contig60322:2860..31701622930977.5377884-CDS-H-elongata_contig60322:2860..3170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60322 2861..3170 +
1691679648.2031994-CDS-H-elongata_contig60322:2860..31701691679648.2031994-CDS-H-elongata_contig60322:2860..3170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60322 2861..3170 +
1622930977.5538943-CDS-H-elongata_contig60322:3369..35121622930977.5538943-CDS-H-elongata_contig60322:3369..3512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60322 3370..3512 +
1691679648.2155948-CDS-H-elongata_contig60322:3369..35121691679648.2155948-CDS-H-elongata_contig60322:3369..3512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60322 3370..3512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60322.13571.1

>prot_H-elongata_contig60322.13571.1 ID=prot_H-elongata_contig60322.13571.1|Name=mRNA_H-elongata_contig60322.13571.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=300bp
SSAADFESGGCATLTDMYNIQSGSGPLYTLDDDDNIVDGGGGSVTGRWLL
TMDLRVLDDVTLYMHGTSIGGDCDVLRIESTDDTFHEVRGYGGSLSFKST
TVTSWDTDSGSERTSYSDGRSFINCVSEQTWDDDTCDGAASKDMGECTMD
IIDSVMGNLGYYDSESYGLTWKVRGYCTDKSNPEVFDRTNVYGDIQGSEI
YGMYYGMYSYGHEGGEWTDNVMRDNIQYGFDPHDDTDNLIIANNEVYGNG
NHGIIASKRCNNVEIYGNEVYDGGDEAVGIFLHRSSDDALVHGELRSCT*
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mRNA from alignment at H-elongata_contig60322:1866..3512+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60322.13571.1 ID=mRNA_H-elongata_contig60322.13571.1|Name=mRNA_H-elongata_contig60322.13571.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1647bp|location=Sequence derived from alignment at H-elongata_contig60322:1866..3512+ (Himanthalia elongata Himel1 dioecious)
TCTTCTGCCGCAGACTTCGAGAGTGGCGGGTGCGCGACGCTGACTGACAT GTACAACATCCAGTCTGGCAGTGGACCTCTGTACACGCTGGACGACGATG ATAACATTGTAGACGGCGGGGGGGGGAGTGTTACCGGCCGATGGCTTTTG ACCATGGACCTCCGCGTGCTGGACGACGTGACACTTTACATGCACGGAAC GAGCATTGGCGGTGATTGCGATGTGCTGCGCATCGAGTCTACCGATGACA CCTTCCACGAAGTCCGCGGGTACGGCGGAAGCCTCTCTTTCAAGAGTACC ACGGTGAGTATTTTGACTTTCGTATAATTTCAAACTTTTGTATTGAAATT AGAGAAAAAATAACAGATTGAGTTCCATAGAGGTTAAAACATGTGTTGGA TCTACTATTGAATTTAATCGTTGGACTTACTCCTCTTTTTTTTTTTGTAA CGTTTTCATAATGGCGAGTATTAGCGGGGGGGTTACACAAGGTTGAATTC CAGCCTGATTTATATTTAAATCAGGCTCTGATTGGAGGACGGCTAGGCGT TATTTAGCTTTCGACCAAAGCGTCCGACTTCAATTTAAATTGGTTGGAAA TTTTAATTTTTGTATTCCGATAAGACCCAGCCAAATTGCCGCCCTAATCT CACGAACAAACCATTCTGTTAACTGCACACGAAATTTCTCTGTGGCAAAG GTGACATCGTGGGACACCGACAGCGGCAGCGAGCGGACATCCTATTCGGA CGGTCGATCGTTCATCAACTGCGTCAGCGAACAGACATGGGATGATGACA CATGCGACGGTGCCGCGAGCAAGGACATGGGAGAGTGCACTATGGTGAGC CAGCCGCCCCTCATCCTCACGGCAGTCTCACCTAGGGAAGGGACGGTCAT CGCGAGAAATTTTATCGTAGAGAGCAGCGCGCTCTCTCTCTCTTACCCGG AAAGTTTAACGAAATGTTTCTTAATTTACCTCCGCCGCTTTTCAGGATAT AATCGACTCCGTCATGGGCAACCTTGGATACTACGATTCGGAGAGCTACG GCCTCACGTGGAAGGTCCGCGGCTACTGCACGGACAAGTCCAACCCTGAG GTGTTCGACCGGACCAACGTGTACGGTGATATCCAGGGCTCCGAAATCTA CGGCATGTATTACGGCATGTACTCGTACGGCCACGAGGGGGGCGAGTGGA CCGACAACGTTATGCGAGACAACATCCAGTACGGCTTCGACCCCCACGAT GATACGGACAACCTTATCATCGCCAACAACGAGGTCTACGGCAACGGCAA CCACGGTAAATAAAAAAAATCATCAAAATACCCAAAACATAAAAAAATAC TTTTTACTGCGGCCATTACTAGATTTACTTTACTTTTTTATGTATTTTTT TAATTTTGCGAAAAGAGTGCGTCGTTTTCTTAAAACGAATTATTAACCCC TGTCCCGTTGTTCCCTTTGCAATAATCGTAAAACTCCTTCGGACTGACCT CCAGGGATCATTGCCTCGAAGCGCTGCAACAACGTTGAGATCTACGGTAA CGAAGTCTACGACGGTGGGGACGAAGCCGTTGGTATCTTCCTTCACCGCA GCTCTGACGATGCTCTAGTGCACGGTGAGCTACGATCTTGTACATAA
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Coding sequence (CDS) from alignment at H-elongata_contig60322:1866..3512+

>mRNA_H-elongata_contig60322.13571.1 ID=mRNA_H-elongata_contig60322.13571.1|Name=mRNA_H-elongata_contig60322.13571.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1800bp|location=Sequence derived from alignment at H-elongata_contig60322:1866..3512+ (Himanthalia elongata Himel1 dioecious)
TCTTCTGCCGCAGACTTCGAGAGTGGCGGGTGCGCGACGCTGACTGACAT
GTACAACATCCAGTCTGGCAGTGGACCTCTGTACACGCTGGACGACGATG
ATAACATTGTAGACGGCGGGGGGGGGAGTGTTACCGGCCGATGGCTTTTG
ACCATGGACCTCCGCGTGCTGGACGACGTGACACTTTACATGCACGGAAC
GAGCATTGGCGGTGATTGCGATGTGCTGCGCATCGAGTCTACCGATGACA
CCTTCCACGAAGTCCGCGGGTACGGCGGAAGCCTCTCTTTCAAGAGTACC
ACGTCTTCTGCCGCAGACTTCGAGAGTGGCGGGTGCGCGACGCTGACTGA
CATGTACAACATCCAGTCTGGCAGTGGACCTCTGTACACGCTGGACGACG
ATGATAACATTGTAGACGGCGGGGGGGGGAGTGTTACCGGCCGATGGCTT
TTGACCATGGACCTCCGCGTGCTGGACGACGTGACACTTTACATGCACGG
AACGAGCATTGGCGGTGATTGCGATGTGCTGCGCATCGAGTCTACCGATG
ACACCTTCCACGAAGTCCGCGGGTACGGCGGAAGCCTCTCTTTCAAGAGT
ACCACGGTGACATCGTGGGACACCGACAGCGGCAGCGAGCGGACATCCTA
TTCGGACGGTCGATCGTTCATCAACTGCGTCAGCGAACAGACATGGGATG
ATGACACATGCGACGGTGCCGCGAGCAAGGACATGGGAGAGTGCACTATG
GTGACATCGTGGGACACCGACAGCGGCAGCGAGCGGACATCCTATTCGGA
CGGTCGATCGTTCATCAACTGCGTCAGCGAACAGACATGGGATGATGACA
CATGCGACGGTGCCGCGAGCAAGGACATGGGAGAGTGCACTATGGATATA
ATCGACTCCGTCATGGGCAACCTTGGATACTACGATTCGGAGAGCTACGG
CCTCACGTGGAAGGTCCGCGGCTACTGCACGGACAAGTCCAACCCTGAGG
TGTTCGACCGGACCAACGTGTACGGTGATATCCAGGGCTCCGAAATCTAC
GGCATGTATTACGGCATGTACTCGTACGGCCACGAGGGGGGCGAGTGGAC
CGACAACGTTATGCGAGACAACATCCAGTACGGCTTCGACCCCCACGATG
ATACGGACAACCTTATCATCGCCAACAACGAGGTCTACGGCAACGGCAAC
CACGGATATAATCGACTCCGTCATGGGCAACCTTGGATACTACGATTCGG
AGAGCTACGGCCTCACGTGGAAGGTCCGCGGCTACTGCACGGACAAGTCC
AACCCTGAGGTGTTCGACCGGACCAACGTGTACGGTGATATCCAGGGCTC
CGAAATCTACGGCATGTATTACGGCATGTACTCGTACGGCCACGAGGGGG
GCGAGTGGACCGACAACGTTATGCGAGACAACATCCAGTACGGCTTCGAC
CCCCACGATGATACGGACAACCTTATCATCGCCAACAACGAGGTCTACGG
CAACGGCAACCACGGGATCATTGCCTCGAAGCGCTGCAACAACGTTGAGA
TCTACGGTAACGAAGTCTACGACGGTGGGGACGAAGCCGTTGGTATCTTC
CTTCACCGCAGCTCTGACGATGCTCTAGTGCACGGTGAGCTACGATCTTG
TACATAAGGATCATTGCCTCGAAGCGCTGCAACAACGTTGAGATCTACGG
TAACGAAGTCTACGACGGTGGGGACGAAGCCGTTGGTATCTTCCTTCACC
GCAGCTCTGACGATGCTCTAGTGCACGGTGAGCTACGATCTTGTACATAA
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