mRNA_H-elongata_contig60287.13570.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: D8LMW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW0_ECTSI) HSP 1 Score: 285 bits (730), Expect = 1.090e-94 Identity = 139/170 (81.76%), Postives = 152/170 (89.41%), Query Frame = 1
Query: 1 IGLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTMLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
+GLTAGGIASFMCCP+EV MVRMQSDARLP +RLGYKHIGDAL+RI+KEEG+R YWRGATPTV+RAMVVSMTQLGTYDQ KT+L PILGDNKG HLASALTAAVV+SYASLPLDSAKTR+QSQ DG LKYT T QTLS+V + EGF SLWKGFTPYF+RSGTHTV
Sbjct: 115 VGLTAGGIASFMCCPIEVCMVRMQSDARLPQADRLGYKHIGDALFRIAKEEGVRTYWRGATPTVSRAMVVSMTQLGTYDQAKTVLLPILGDNKGLHLASALTAAVVYSYASLPLDSAKTRMQSQAASTDGKPLKYTSTLQTLSHVAKSEGFFSLWKGFTPYFLRSGTHTV 284
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A835Z4J2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J2_9STRA) HSP 1 Score: 233 bits (593), Expect = 5.820e-74 Identity = 115/169 (68.05%), Postives = 133/169 (78.70%), Query Frame = 1
Query: 4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTMLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
GL AGGIA+F+ CP+EV +VRMQ+D RLP ER GY ++ +AL R++KEEG+ YWRGA+PTVARAMVVS TQLGTYDQVKT L PILGD T +ALTAAVV+SYASLPLD+AKTR+Q Q RDG LKYTG QT+ + R EG SLWKGFTPYFVRSG HTV
Sbjct: 111 GLAAGGIAAFLTCPIEVCLVRMQADGRLPPAERRGYTNVFNALGRVAKEEGVLTYWRGASPTVARAMVVSATQLGTYDQVKTSLLPILGDGAATQTVAALTAAVVYSYASLPLDTAKTRMQGQARARDGAPLKYTGMLQTVGAIAREEGARSLWKGFTPYFVRSGGHTV 279
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: W7TLF9_9STRA (Mitochondrial 2-oxoglutarate malate carrier protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLF9_9STRA) HSP 1 Score: 194 bits (494), Expect = 7.610e-59 Identity = 101/170 (59.41%), Postives = 121/170 (71.18%), Query Frame = 1
Query: 7 LTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVK-TMLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRD-GGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
+TAG ASF+ CPVEV +VRMQ+D +LP +R GYKH+GDAL R+++EEG+ YWRGA PTV RAMVVS TQLGTYDQ K T L D HL S+LTA +V+S ASLPLD+AKTR+QSQ P GG+L Y T QTL + EG +LWKGF YF+R G HTV
Sbjct: 125 MTAGACASFLACPVEVCLVRMQADGKLPPEQRRGYKHVGDALLRVAREEGVLTYWRGAGPTVMRAMVVSTTQLGTYDQAKVTFKETGLPDGTSLHLISSLTAGLVYSLASLPLDTAKTRMQSQAAPSTPGGALAYRSTGQTLMKIASEEGVGALWKGFGAYFLRGGGHTV 294
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A4D9CTP4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTP4_9STRA) HSP 1 Score: 194 bits (494), Expect = 8.520e-59 Identity = 101/170 (59.41%), Postives = 121/170 (71.18%), Query Frame = 1
Query: 7 LTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVK-TMLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRD-GGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
+TAG ASF+ CPVEV +VRMQ+D +LP +R GYKH+GDAL R+++EEG+ YWRGA PTV RAMVVS TQLGTYDQ K T L D HL S+LTA +V+S ASLPLD+AKTR+QSQ P GG+L Y T QTL + EG +LWKGF YF+R G HTV
Sbjct: 129 MTAGACASFLACPVEVCLVRMQADGKLPPEQRRGYKHVGDALLRVAREEGVLTYWRGAGPTVMRAMVVSTTQLGTYDQAKVTFKETGLPDGTSLHLISSLTAGLVYSLASLPLDTAKTRMQSQAAPSTPGGALAYRSTGQTLMKIASEEGVGALWKGFGAYFLRGGGHTV 298
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A7S4LEC9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LEC9_9EUGL) HSP 1 Score: 193 bits (490), Expect = 8.580e-59 Identity = 97/171 (56.73%), Postives = 128/171 (74.85%), Query Frame = 1
Query: 4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKT--MLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
G+ AGG+A+FMC PVEV +VRMQ+D RLPA E+ GYKH+GDAL RI+ EEG Y+RG+ PTV RA+VVS+TQ+ YDQ+K+ + T + DN HL+S+++A ++S ASLP D+ KTR+Q+Q P G L YTGTFQT++ +++ EG TSLWKGF PYF R G HTV
Sbjct: 81 GVGAGGLAAFMCNPVEVCLVRMQADGRLPAAEQRGYKHVGDALVRIASEEGFVTYYRGSAPTVVRAIVVSVTQVAGYDQIKSGFLSTGLFQDNILCHLSSSVSAGFLYSLASLPFDTTKTRMQNQK-PGADGKLPYTGTFQTMTSIIKQEGATSLWKGFLPYFGRCGGHTV 250
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A7S4GIE6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GIE6_9EUGL) HSP 1 Score: 186 bits (471), Expect = 6.570e-56 Identity = 92/170 (54.12%), Postives = 120/170 (70.59%), Query Frame = 1
Query: 7 LTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKT--MLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
+ AG A+ +C PVEV +VRMQ+D RLP E+ GYKH+GDAL R+++EEG+ YWRG TPTV RA+VVS+TQ+ YDQ+K + T DN HL S++ A ++S ASLP D+ KTR+Q+Q P G L YTGTFQT++ ++R EG S+WKGF PYF R G HTV
Sbjct: 82 VAAGAAAACVCNPVEVCLVRMQADGRLPPAEQRGYKHVGDALMRVAREEGVLTYWRGCTPTVVRAIVVSVTQVAGYDQIKAGFLSTGYFQDNIFCHLTSSVAAGFIYSLASLPFDTTKTRMQNQK-PGPDGKLPYTGTFQTMTNIIRNEGAASMWKGFMPYFGRCGGHTV 250
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A0G4GW21_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GW21_VITBC) HSP 1 Score: 179 bits (454), Expect = 7.010e-53 Identity = 95/172 (55.23%), Postives = 121/172 (70.35%), Query Frame = 1
Query: 4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTML---TPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
GLT+G IAS +CCPVEVS+VRMQ+D RLP ER GY ++ +ALYRI+KEEGI WRG+TPTVARAMVV+M Q G+YDQ K +L TP+ G G H +++L + +S ASLP D AKTR+Q+Q P G +Y FQT+ + +EG SLWKGF PYF R G H++
Sbjct: 118 GLTSGAIASVVCCPVEVSLVRMQADGRLPVAERRGYTNVFNALYRIAKEEGILTCWRGSTPTVARAMVVNMVQFGSYDQAKEVLMAMTPLKG--VGLHFSASLISGFTYSAASLPFDIAKTRMQNQKTPA-GEIPQYRNIFQTMWRIGSLEGPLSLWKGFWPYFGRGGGHSI 286
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A7S1JD16_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JD16_9EUGL) HSP 1 Score: 178 bits (452), Expect = 9.810e-53 Identity = 95/171 (55.56%), Postives = 121/171 (70.76%), Query Frame = 1
Query: 4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTML--TPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
G+ AG IAS +C P+EV +VRMQSD RLP E+ YKHI DAL R+++EEGI YWRG TPTV RA+VVS+TQ+ YDQ+K L + DN HL+S++ A ++S ASLP D+ KTR+Q+Q P DG L YT T QT+S+++R EG S+WKGF PYF R G HTV
Sbjct: 107 GVGAGAIASSVCNPIEVCLVRMQSDGRLPKAEQRNYKHIFDALGRVAREEGILTYWRGCTPTVVRAIVVSVTQVAGYDQIKASLLNSGWFQDNMYCHLSSSVLAGFIYSAASLPFDTTKTRMQTQK-PVDG-KLLYTSTAQTMSHIIRNEGPKSMWKGFLPYFGRCGGHTV 275
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A7S2TXY1_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2TXY1_9EUKA) HSP 1 Score: 176 bits (446), Expect = 9.260e-52 Identity = 91/171 (53.22%), Postives = 109/171 (63.74%), Query Frame = 1
Query: 4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTMLTP--ILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
GL AG A+ +CCPVEVS+VRMQ+D P +R YKHI DA+ R++ EEGI WRG PTV R VVS TQL TYDQ K+ML IL + G HLAS+L + V+ + SLPLD KTR+Q Q G L YT FQ L + + EG +LWKGF PYF R G HTV
Sbjct: 110 GLAAGATAATICCPVEVSLVRMQADGNRPLADRRNYKHIFDAMMRVTAEEGITTLWRGVVPTVFRGAVVSTTQLATYDQAKSMLKSFNILNEGVGLHLASSLISGFVYCFTSLPLDICKTRMQDQKPDVKTGKLPYTSVFQALYKIPQQEGIFALWKGFGPYFARGGGHTV 280
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A0G4HYE4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HYE4_9ALVE) HSP 1 Score: 176 bits (446), Expect = 1.310e-51 Identity = 92/174 (52.87%), Postives = 118/174 (67.82%), Query Frame = 1
Query: 4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTML-----TPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
GL +G A+ +CCPVEVS++RMQ+D RLP ER YK++ D + RI++EEGI WRG+TPTV RAMVV+M Q+ TYD+ K L L H AS+LT+ ++S ASLP D AKTR+Q+Q DG S +Y+ FQTL +VR+EG +LWKGF PYF RSG HTV
Sbjct: 120 GLASGATAATICCPVEVSLIRMQADGRLPPEERRNYKNVFDGILRIAREEGIATCWRGSTPTVVRAMVVNMVQMATYDEAKRTLQKQNAVSSLKAGLPLHFASSLTSGFLYSAASLPFDIAKTRMQNQKALADG-SRQYSNIFQTLMLIVRLEGPAALWKGFAPYFGRSGLHTV 292 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60287.13570.1 >prot_H-elongata_contig60287.13570.1 ID=prot_H-elongata_contig60287.13570.1|Name=mRNA_H-elongata_contig60287.13570.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp IGLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEback to top mRNA from alignment at H-elongata_contig60287:2193..3623- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60287.13570.1 ID=mRNA_H-elongata_contig60287.13570.1|Name=mRNA_H-elongata_contig60287.13570.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1431bp|location=Sequence derived from alignment at H-elongata_contig60287:2193..3623- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60287:2193..3623- >mRNA_H-elongata_contig60287.13570.1 ID=mRNA_H-elongata_contig60287.13570.1|Name=mRNA_H-elongata_contig60287.13570.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig60287:2193..3623- (Himanthalia elongata Himel1 dioecious)back to top |