mRNA_H-elongata_contig60277.13567.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60277.13567.1
Unique NamemRNA_H-elongata_contig60277.13567.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60277.13567.1 vs. uniprot
Match: D7FP56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP56_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.810e-26
Identity = 80/173 (46.24%), Postives = 91/173 (52.60%), Query Frame = 1 
Query:  409 YKGEWKRGARDGNGVCTF-----------ASVSTPRAGEAAATVPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL---------------GGNGCGSIDGEWTEEGLVRGRETLPGKGGVYEGQYRLGKRHGHGRLELLDGSEFEGTWRNGRPNGIGTFRCGVTRQV 849
            Y+G++KRG RDG+GVC+F           A+  TP A  +  T+P+S                          XXXXX                  GG   GSI+G WTEEGL RGRE LPGKGGVYEGQYRLGKR GHGRL+L DGSE          NGIGTFRCGVTR V
Sbjct:  312 YRGDFKRGVRDGHGVCSFFTAGCGGGCSVATGGTPGA-TSIPTIPNSYDGEWVGGRPLGRGVLSLRVVAAAPAXXXXXSNRYSSSVAGSGSGLAGRGGGSGGSIEGLWTEEGLARGREKLPGKGGVYEGQYRLGKREGHGRLDLPDGSEXXXXXXXXXXNGIGTFRCGVTRHV 483
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60277.13567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP56_ECTSI1.810e-2646.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60277contigH-elongata_contig60277:416..2417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size1017
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60277.13567.1prot_H-elongata_contig60277.13567.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60277 442..1600 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.0711102-UTR-H-elongata_contig60277:415..4411622930977.0711102-UTR-H-elongata_contig60277:415..441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60277 416..441 -
1691679648.0184355-UTR-H-elongata_contig60277:415..4411691679648.0184355-UTR-H-elongata_contig60277:415..441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60277 416..441 -
1622930977.1357267-UTR-H-elongata_contig60277:1600..18711622930977.1357267-UTR-H-elongata_contig60277:1600..1871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60277 1601..1871 -
1691679648.0587118-UTR-H-elongata_contig60277:1600..18711691679648.0587118-UTR-H-elongata_contig60277:1600..1871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60277 1601..1871 -
1622930977.1537254-UTR-H-elongata_contig60277:2243..24171622930977.1537254-UTR-H-elongata_contig60277:2243..2417Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60277 2244..2417 -
1691679648.0663605-UTR-H-elongata_contig60277:2243..24171691679648.0663605-UTR-H-elongata_contig60277:2243..2417Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60277 2244..2417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.0871263-CDS-H-elongata_contig60277:441..5431622930977.0871263-CDS-H-elongata_contig60277:441..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60277 442..543 -
1691679648.0279307-CDS-H-elongata_contig60277:441..5431691679648.0279307-CDS-H-elongata_contig60277:441..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60277 442..543 -
1622930977.1039836-CDS-H-elongata_contig60277:771..8761622930977.1039836-CDS-H-elongata_contig60277:771..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60277 772..876 -
1691679648.0378065-CDS-H-elongata_contig60277:771..8761691679648.0378065-CDS-H-elongata_contig60277:771..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60277 772..876 -
1622930977.120519-CDS-H-elongata_contig60277:1261..16001622930977.120519-CDS-H-elongata_contig60277:1261..1600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60277 1262..1600 -
1691679648.0475495-CDS-H-elongata_contig60277:1261..16001691679648.0475495-CDS-H-elongata_contig60277:1261..1600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60277 1262..1600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60277.13567.1

>prot_H-elongata_contig60277.13567.1 ID=prot_H-elongata_contig60277.13567.1|Name=mRNA_H-elongata_contig60277.13567.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MVSARSLRSRPPARERRLLPSPTPTRASGWVVCRLVRGFSVGEQQKRDRR
DRRLLRHSVATGVVPSMASGRRKGSFVEGRRFRAREASTKDSTDSESAMA
MVVSSCWTVASSRGRGGTGAQTASEPSAAGSRVKFTSGNGWGGSDAGEAS
ANTLPAAATRGCGSTAKSTARASSCHRREAR*
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mRNA from alignment at H-elongata_contig60277:416..2417-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60277.13567.1 ID=mRNA_H-elongata_contig60277.13567.1|Name=mRNA_H-elongata_contig60277.13567.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2002bp|location=Sequence derived from alignment at H-elongata_contig60277:416..2417- (Himanthalia elongata Himel1 dioecious)
GTTCGAGGCGGGCGGGAAGTTCTCCTGTTTGGGGGCTGCCGCGGAGACGG
AACGCGACTGCGCGACTCCTTCGTACTCGATCTGGTGAGCCCGGATGAAC
GACGGGGCGGAGACGATGGACGGGAGGAGGGAGCCAGCGGGGGGGAAAAA
GACGACCAGGTGCAATCAATTGCTGTATTTTTTTTCCCCTCGTAAGGGCG
CATTGATGGGGGATAGGAAAATACTTGGTTGCCGAAGGCAGTGCCACGTT
AAGGCCCGCCTGGCAGCGCCTTCCATTTTCTAGAGGTTTTGTGGGGGGTT
GCCCGTTCCCGTGTCCCCCCCCCGGTTGCCCCGAGGCGTGTTCTCGTGTC
AGTGAGTCCAACGATACTCCCAATTCATACACTTAAGAAATAAACAGTGC
TTGGATATTTCGCTTGTTCGGATCCCCCGTTATCATCCAGTTGAGGGTGT
GGACGCCCCCAATGCCACTTTTTCCATACTATATGGTTATTATCACATGT
CTGAAATATATGTATATATTTATTTTTTTGCGCGGGCGGGGGGAAGAACG
TCCCCGTGACGCTCGACAACGGAGACGTGTATACTGGGCAACGCGACCCC
GACGGCCGCCGCCACGGGGAAGGGACGTGCGAGTACGCAGGATCCGACCG
CGGCTCATACACCGGGCAATGGGAAGCCGACGAGCCCCACGGTCGCGGTG
AGCGAATCTATCCCACCAGGGGTCAGCACCGCGAGAATCTCCTCGGCGTG
TTTGGACCCGGAGCCCCCCCCATGGCGAGCTACAAGGGAGAATGGAAACG
GGGCGCGCGCGACGGAAATGGTGTCTGCACGTTCGCTTCGGTCTCGACCC
CCCGCGCGGGAGAGGCGGCTGCTACCGTCCCCGACTCCTACGAGGGCGAG
TGGGTGGGTGGTATGCCGTTTGGTAAGGGGGTTCTCCGTTGGCGAGCAAC
AAAAACGGGATCGTCGGGATCGACGGCTGCTGCGGCACTCGGTGGCAACG
GGTGTGGTTCCATCGATGGCGAGTGGACGGAGGAAGGGCTCGTTCGTGGA
AGGGAGACGCTTCCGGGCAAGGGAGGCGTCTACGAAGGACAGTACCGACT
CGGAAAGCGCCATGGCCATGGTCGTCTCGAGTTGCTGGACGGTAGCGAGT
TCGAGGGTAAGACATAAGTTTCTTCGTGTGAAGTGTCCACGCCTGGTGCT
GGGATGGGAATTGCCGGGTTGTGATTCCCGCTCGCAACAGCGTCGACGAT
ATTTTATTTGTAATGTTTTCCAAATTTCTCCGCCAGACATTTTGGAGAGA
ATCGCACAACCACTGTCCAAGTCGGGAGCAACGAGCTCTTCAGCAATAAC
ACATAAGATGATGCTACACCCACGTGCAACAATACCATGTCTCCCTTCCA
ATCGAACGTCAGGCCTCTACGTCCCGATTCTCTTGGGGCTTCAGAAGCTC
GTCCTACAAGGAGGCTTGTCATCACACAAATCGAACAACGACCCATTCCC
CCCTCCCCCCCTCCCATCGCGATAAATCGGCAATCGTGTAGGGACGTGGA
GGAACGGGCGCCCAAACGGCATCGGAACCTTCCGCTGCGGGGTCACGCGT
CAAGTTTACATCGGGAAATGGGTGGGGGGGGTCAGATGCGGGAGAGGTGA
GGCGGGCTCTCTCGCCACGCTGAATGGATTAACCGTCACCCGAATAATGG
CGGGTTTTTATCACCTCCAGCGGGAAACCAACCGTTCCATGTTTTGGCAC
CGCCCCGGGACCGGGGGGGAGATGCTCGGCGTCTGGTTACAGTCGTATCC
CTTTTTTTATCTCTTATCTCTCTTTTTTTGCTCGACATGCACGCCTCAAA
AAATAATCGTCCCCCCAAAGCCAGGCGAGTGCCAATACGCTTCCGGCAGC
CGCTACGAGGGGCTGTGGCTCGACGGCAAAAAGCACGGCGAGGGCGTCCT
CGTGTCACCGGCGGGAGGCTCGCTGAGAGGAGTGTGGTGTCGGGACGAGC
TT
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Coding sequence (CDS) from alignment at H-elongata_contig60277:416..2417-

>mRNA_H-elongata_contig60277.13567.1 ID=mRNA_H-elongata_contig60277.13567.1|Name=mRNA_H-elongata_contig60277.13567.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig60277:416..2417- (Himanthalia elongata Himel1 dioecious)
ATGGTGTCTGCACGTTCGCTTCGGTCTCGACCCCCCGCGCGGGAGAGGCG
GCTGCTACCGTCCCCGACTCCTACGAGGGCGAGTGGGTGGGTGGTATGCC
GTTTGGTAAGGGGGTTCTCCGTTGGCGAGCAACAAAAACGGGATCGTCGG
GATCGACGGCTGCTGCGGCACTCGGTGGCAACGGGTGTGGTTCCATCGAT
GGCGAGTGGACGGAGGAAGGGCTCGTTCGTGGAAGGGAGACGCTTCCGGG
CAAGGGAGGCGTCTACGAAGGACAGTACCGACTCGGAAAGCGCCATGGCC
ATGGTCGTCTCGAGTTGCTGGACGGTAGCGAGTTCGAGGATGGTGTCTGC
ACGTTCGCTTCGGTCTCGACCCCCCGCGCGGGAGAGGCGGCTGCTACCGT
CCCCGACTCCTACGAGGGCGAGTGGGTGGGTGGTATGCCGTTTGGTAAGG
GGGTTCTCCGTTGGCGAGCAACAAAAACGGGATCGTCGGGATCGACGGCT
GCTGCGGCACTCGGTGGCAACGGGTGTGGTTCCATCGATGGCGAGTGGAC
GGAGGAAGGGCTCGTTCGTGGAAGGGAGACGCTTCCGGGCAAGGGAGGCG
TCTACGAAGGACAGTACCGACTCGGAAAGCGCCATGGCCATGGTCGTCTC
GAGTTGCTGGACGGTAGCGAGTTCGAGGGGACGTGGAGGAACGGGCGCCC
AAACGGCATCGGAACCTTCCGCTGCGGGGTCACGCGTCAAGTTTACATCG
GGAAATGGGTGGGGGGGGTCAGATGCGGGAGAGGGACGTGGAGGAACGGG
CGCCCAAACGGCATCGGAACCTTCCGCTGCGGGGTCACGCGTCAAGTTTA
CATCGGGAAATGGGTGGGGGGGGTCAGATGCGGGAGAGGCGAGTGCCAAT
ACGCTTCCGGCAGCCGCTACGAGGGGCTGTGGCTCGACGGCAAAAAGCAC
GGCGAGGGCGTCCTCGTGTCACCGGCGGGAGGCTCGCTGAGCGAGTGCCA
ATACGCTTCCGGCAGCCGCTACGAGGGGCTGTGGCTCGACGGCAAAAAGC
ACGGCGAGGGCGTCCTCGTGTCACCGGCGGGAGGCTCGCTGA
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