prot_H-elongata_contig60273.13565.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig60273.13565.1
Unique Name	prot_H-elongata_contig60273.13565.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	101

Homology

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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A7R9DXR4_TIMPO (Hypothetical protein n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9DXR4_TIMPO)

HSP 1 Score: 191 bits (486), Expect = 2.270e-61
Identity = 90/99 (90.91%), Postives = 98/99 (98.99%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGHVLIPQSDLR+SKQTDVG+THFRSGMSH+E+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:    1 MLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQK 99

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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A2G9R6T2_LITCT (U5_2-snRNA_bdg domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9R6T2_LITCT)

HSP 1 Score: 195 bits (495), Expect = 4.680e-61
Identity = 91/99 (91.92%), Postives = 99/99 (100.00%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGHVLIPQSDLR+SKQTDVG+THFRSGMSHEE+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:   91 MLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQK 189

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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A0S7ETQ1_9TELE (PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ETQ1_9TELE)

HSP 1 Score: 195 bits (495), Expect = 1.840e-60
Identity = 91/99 (91.92%), Postives = 99/99 (100.00%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGHVLIPQSDLR+SKQTDVG+THFRSGMSHEE+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:  107 MLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQK 205

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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A1B6JTR3_9HEMI (U6-snRNA_bdg domain-containing protein (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A1B6JTR3_9HEMI)

HSP 1 Score: 191 bits (486), Expect = 4.880e-59
Identity = 90/99 (90.91%), Postives = 98/99 (98.99%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGHVLIPQSDLR+SKQTDVG+THFRSGMSH+E+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:   15 MLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQK 113

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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A396JHQ0_MEDTR (Putative ribonuclease H-like domain, pre-mRNA-processing-splicing factor 8, U5-snRNA-binding protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JHQ0_MEDTR)

HSP 1 Score: 189 bits (481), Expect = 1.240e-58
Identity = 90/99 (90.91%), Postives = 96/99 (96.97%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGH+LIP SDLRYS+QTDV VTHFRSGMSHEE+QLIPNL+RY+QPWESEFVDSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:  127 MLSMGHILIPHSDLRYSQQTDVAVTHFRSGMSHEEDQLIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQK 225

[Close]

BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.830e-58
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct: 1434 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 1532

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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A6G3MKT4_HENSL (Pre-mRNA-processing-splicing factor 8 (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MKT4_HENSL)

HSP 1 Score: 186 bits (471), Expect = 3.870e-58
Identity = 86/99 (86.87%), Postives = 97/99 (97.98%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGHVLIPQSDLR+S+QT+ G+THFRSGMSHEE+Q+IPNL+RY+QPWESEFVDSQRVWAEYALK+QEA AQ+RRLTLEDLEDSWDRGIPRINTLFQ+
Sbjct:   14 MLSMGHVLIPQSDLRWSQQTETGITHFRSGMSHEEDQIIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAAAQSRRLTLEDLEDSWDRGIPRINTLFQR 112

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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: UPI000900C6A3 (pre-mRNA-processing-splicing factor 8A-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000900C6A3)

HSP 1 Score: 193 bits (490), Expect = 6.760e-58
Identity = 90/99 (90.91%), Postives = 98/99 (98.99%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGH+LIPQSDLRYSKQTD+GV+HFRSGMSHEE+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:   21 MLSMGHILIPQSDLRYSKQTDIGVSHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQK 119

[Close]

BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A7S3SG89_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SG89_9SPIT)

HSP 1 Score: 184 bits (466), Expect = 1.430e-57
Identity = 85/99 (85.86%), Postives = 96/99 (96.97%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGH+LIPQSDLRYSKQT+ G+TH+RSG+SHEE+QLIPNL+RY+Q WE+EFVDSQRVWAEYALK+QEA AQNRRLTLEDLED+WDRGIPRINTLFQK
Sbjct:   48 MLSMGHILIPQSDLRYSKQTETGITHYRSGLSHEEDQLIPNLYRYIQTWEAEFVDSQRVWAEYALKRQEANAQNRRLTLEDLEDAWDRGIPRINTLFQK 146

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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: UPI000C6FC39D (pre-mRNA-processing-splicing factor 8-like n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI000C6FC39D)

HSP 1 Score: 191 bits (486), Expect = 2.610e-57
Identity = 90/99 (90.91%), Postives = 98/99 (98.99%), Query Frame = 0

Query:    1 MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 99
            MLSMGHVLIPQSDLR+SKQTDVG+THFRSGMSH+E+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:  319 MLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQK 417

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot

BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7R9DXR4_TIMPO	2.270e-61	90.91	Hypothetical protein n=1 Tax=Timema poppense TaxID...	[more]
A0A2G9R6T2_LITCT	4.680e-61	91.92	U5_2-snRNA_bdg domain-containing protein n=1 Tax=L...	[more]
A0A0S7ETQ1_9TELE	1.840e-60	91.92	PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica Tax...	[more]
A0A1B6JTR3_9HEMI	4.880e-59	90.91	U6-snRNA_bdg domain-containing protein (Fragment) ...	[more]
A0A396JHQ0_MEDTR	1.240e-58	90.91	Putative ribonuclease H-like domain, pre-mRNA-proc...	[more]
A0A6H5K085_9PHAE	2.830e-58	100.00	MPN domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A6G3MKT4_HENSL	3.870e-58	86.87	Pre-mRNA-processing-splicing factor 8 (Trinotate p...	[more]
UPI000900C6A3	6.760e-58	90.91	pre-mRNA-processing-splicing factor 8A-like n=1 Ta...	[more]
A0A7S3SG89_9SPIT	1.430e-57	85.86	Hypothetical protein (Fragment) n=1 Tax=Strombidin...	[more]
UPI000C6FC39D	2.610e-57	90.91	pre-mRNA-processing-splicing factor 8-like n=1 Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027652	Pre-mRNA-processing-splicing factor 8	PANTHER	PTHR11140	PRE-MRNA SPLICING FACTOR PRP8	coord: 1..99
None	No IPR available	PANTHER	PTHR11140:SF1		coord: 1..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig60273	contig	H-elongata_contig60273:1872..3062 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig60273.13565.1	mRNA_H-elongata_contig60273.13565.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig60273 1854..3062 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig60273.13565.1 ID=prot_H-elongata_contig60273.13565.1|Name=mRNA_H-elongata_contig60273.13565.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWE
SEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQKV
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027652	PRP8