mRNA_H-elongata_contig60273.13565.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60273.13565.1
Unique NamemRNA_H-elongata_contig60273.13565.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A2G9R6T2_LITCT (U5_2-snRNA_bdg domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9R6T2_LITCT)

HSP 1 Score: 207 bits (527), Expect = 8.330e-66
Identity = 97/105 (92.38%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            ELGGLGMLSMGHVLIPQSDLR+SKQTDVG+THFRSGMSHEE+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:   85 ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQK 189
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A0S7ETQ1_9TELE (PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ETQ1_9TELE)

HSP 1 Score: 207 bits (527), Expect = 3.380e-65
Identity = 97/105 (92.38%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            ELGGLGMLSMGHVLIPQSDLR+SKQTDVG+THFRSGMSHEE+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:  101 ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQK 205
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A396JHQ0_MEDTR (Putative ribonuclease H-like domain, pre-mRNA-processing-splicing factor 8, U5-snRNA-binding protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JHQ0_MEDTR)

HSP 1 Score: 201 bits (511), Expect = 4.510e-63
Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            E+GGLGMLSMGH+LIP SDLRYS+QTDV VTHFRSGMSHEE+QLIPNL+RY+QPWESEFVDSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:  121 EIGGLGMLSMGHILIPHSDLRYSQQTDVAVTHFRSGMSHEEDQLIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQK 225
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A6G3MKT4_HENSL (Pre-mRNA-processing-splicing factor 8 (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MKT4_HENSL)

HSP 1 Score: 198 bits (503), Expect = 6.720e-63
Identity = 92/105 (87.62%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            ELGGLGMLSMGHVLIPQSDLR+S+QT+ G+THFRSGMSHEE+Q+IPNL+RY+QPWESEFVDSQRVWAEYALK+QEA AQ+RRLTLEDLEDSWDRGIPRINTLFQ+
Sbjct:    8 ELGGLGMLSMGHVLIPQSDLRWSQQTETGITHFRSGMSHEEDQIIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAAAQSRRLTLEDLEDSWDRGIPRINTLFQR 112
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A1B6JTR3_9HEMI (U6-snRNA_bdg domain-containing protein (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A1B6JTR3_9HEMI)

HSP 1 Score: 201 bits (511), Expect = 1.030e-62
Identity = 95/105 (90.48%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            E GGLGMLSMGHVLIPQSDLR+SKQTDVG+THFRSGMSH+E+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:    9 EPGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQK 113
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.780e-62
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct: 1428 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 1532
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A7S3SG89_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SG89_9SPIT)

HSP 1 Score: 196 bits (498), Expect = 2.470e-62
Identity = 91/105 (86.67%), Postives = 102/105 (97.14%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            ELGGLGMLSMGH+LIPQSDLRYSKQT+ G+TH+RSG+SHEE+QLIPNL+RY+Q WE+EFVDSQRVWAEYALK+QEA AQNRRLTLEDLED+WDRGIPRINTLFQK
Sbjct:   42 ELGGLGMLSMGHILIPQSDLRYSKQTETGITHYRSGLSHEEDQLIPNLYRYIQTWEAEFVDSQRVWAEYALKRQEANAQNRRLTLEDLEDAWDRGIPRINTLFQK 146
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: UPI000900C6A3 (pre-mRNA-processing-splicing factor 8A-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000900C6A3)

HSP 1 Score: 204 bits (520), Expect = 2.900e-62
Identity = 95/105 (90.48%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            E+GGLGMLSMGH+LIPQSDLRYSKQTD+GV+HFRSGMSHEE+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:   15 EIGGLGMLSMGHILIPQSDLRYSKQTDIGVSHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQK 119
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: UPI000C6FC39D (pre-mRNA-processing-splicing factor 8-like n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI000C6FC39D)

HSP 1 Score: 204 bits (518), Expect = 5.630e-62
Identity = 96/105 (91.43%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            ELGGLGMLSMGHVLIPQSDLR+SKQTDVG+THFRSGMSH+E+QLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:  313 ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQK 417
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BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Match: A0A7S1T179_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T179_9CHLO)

HSP 1 Score: 204 bits (519), Expect = 2.180e-61
Identity = 96/105 (91.43%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:    1 ELGGLGMLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQK 315
            E+GGLGMLSMGH+LIPQSDLRYS+QTD+GVTHFR+GMSHEEEQLIPNL+RY+QPWESEFVDSQRVWAEYALK+QEA AQNRRLTLEDLEDSWDRGIPRINTLFQK
Sbjct:  259 EIGGLGMLSMGHILIPQSDLRYSQQTDLGVTHFRAGMSHEEEQLIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQK 363
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60273.13565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G9R6T2_LITCT8.330e-6692.38U5_2-snRNA_bdg domain-containing protein n=1 Tax=L... [more]
A0A0S7ETQ1_9TELE3.380e-6592.38PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica Tax... [more]
A0A396JHQ0_MEDTR4.510e-6390.48Putative ribonuclease H-like domain, pre-mRNA-proc... [more]
A0A6G3MKT4_HENSL6.720e-6387.62Pre-mRNA-processing-splicing factor 8 (Trinotate p... [more]
A0A1B6JTR3_9HEMI1.030e-6290.48U6-snRNA_bdg domain-containing protein (Fragment) ... [more]
A0A6H5K085_9PHAE1.780e-62100.00MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3SG89_9SPIT2.470e-6286.67Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
UPI000900C6A32.900e-6290.48pre-mRNA-processing-splicing factor 8A-like n=1 Ta... [more]
UPI000C6FC39D5.630e-6291.43pre-mRNA-processing-splicing factor 8-like n=1 Tax... [more]
A0A7S1T179_9CHLO2.180e-6191.43Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60273contigH-elongata_contig60273:1854..3062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.8
Seed ortholog evalue3.9e-50
Seed eggNOG ortholog2880.D8LLJ8
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGsCOG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60273.13565.1prot_H-elongata_contig60273.13565.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60273 1872..3062 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.8050928-UTR-H-elongata_contig60273:1853..18711622930976.8050928-UTR-H-elongata_contig60273:1853..1871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60273 1854..1871 +
1691679647.9309201-UTR-H-elongata_contig60273:1853..18711691679647.9309201-UTR-H-elongata_contig60273:1853..1871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60273 1854..1871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.8249698-CDS-H-elongata_contig60273:1871..20121622930976.8249698-CDS-H-elongata_contig60273:1871..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60273 1872..2012 +
1691679647.9413362-CDS-H-elongata_contig60273:1871..20121691679647.9413362-CDS-H-elongata_contig60273:1871..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60273 1872..2012 +
1622930976.8449256-CDS-H-elongata_contig60273:2900..30621622930976.8449256-CDS-H-elongata_contig60273:2900..3062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60273 2901..3062 +
1691679647.949802-CDS-H-elongata_contig60273:2900..30621691679647.949802-CDS-H-elongata_contig60273:2900..3062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60273 2901..3062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60273.13565.1

>prot_H-elongata_contig60273.13565.1 ID=prot_H-elongata_contig60273.13565.1|Name=mRNA_H-elongata_contig60273.13565.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MLSMGHVLIPQSDLRYSKQTDVGVTHFRSGMSHEEEQLIPNLFRYLQPWE
SEFVDSQRVWAEYALKKQEAVAQNRRLTLEDLEDSWDRGIPRINTLFQKV
*
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mRNA from alignment at H-elongata_contig60273:1854..3062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60273.13565.1 ID=mRNA_H-elongata_contig60273.13565.1|Name=mRNA_H-elongata_contig60273.13565.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1209bp|location=Sequence derived from alignment at H-elongata_contig60273:1854..3062+ (Himanthalia elongata Himel1 dioecious)
GAGCTGGGCGGCCTGGGAATGCTCAGCATGGGACACGTGCTGATTCCACA
AAGCGACCTGCGGTACTCCAAGCAGACGGACGTCGGAGTCACCCACTTCC
GATCCGGCATGAGCCACGAGGAGGAACAGCTCATTCCTAACCTTTTCCGA
TACCTCCAGGTAGCTATGGTCTATAGCTCTATGCTTATAATTCATTATTA
ATATTAATATTACTACTTTTTTGGTATAAATATATATATATATATATATT
TATTTTTCGTTGTATATATTTGTATGTATATTTCGTTATATATTTAGTTT
ATTTTACTTTTACTTTTTGTATGCATTTTTTCGCTATACAGCATTCTGAC
CATAGGCTCTTGATGCTTGTGTGGAGCATGGAGCGCCCCGTCCGCGTTGT
ATTGATTCGTGTTGGATGTTTCAATATTAACACGCTATTCTTATCTCCTT
TCGAGGGATTTTTAGTTTTTTTGTTGGCGTTGTAAATGTGGGCATCTGTG
GTAATATGTCCTTATTCTTTCGCCCCACCTACGCCGAGGGTGTTAAGAAA
CGTTCGTGTCGCATCCATATTCAACCTACCCATGTGGACGTTTCGCCCGT
TACTGTTGCATCCTATTACATCCAAAAACGAGATTGTGGACGGTTCGCTA
CATAAAAGTGCCCTCGGCATCCGACTCTAGAGCTGTAAGATAAAAGGCTG
TCGCTTGTGCTGTAACTGACTGCGAGGAGGCGTTTTCTTCCCAGGGGATA
TGTAAAGGGGTAGGTGTGAGAGATTTATCAAGCTAACCGGGTGGGTTTAT
CGCGCGGACTCGTCCCGTGATACCGTCCCGCTACTCCTGGCTACTGCTTT
CCCCGTAAGATAAAAGGCTGTCGCTTGTGCTGTGACTGGCTGCGAAGAGG
CGTTTTCTTCCCAGGGGATATATAAAGGGGTATGTGTGAGAGATTTATCA
AGCTAACCGGGTGGGTTTATCGCGCCGACTCGTCCCGTGATACCGTCCCG
CTACTCCTGGCTACTGCTTTCCCCCCCCTTTTTTCCCCCTACGTTAGCCG
TGGGAGAGCGAGTTCGTGGACAGCCAACGCGTTTGGGCAGAGTACGCCCT
AAAAAAACAGGAAGCGGTTGCCCAGAATCGGCGTTTAACGCTGGAGGATC
TCGAAGACTCCTGGGACAGGGGGATTCCCCGCATCAACACGCTCTTCCAA
AAGGTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig60273:1854..3062+

>mRNA_H-elongata_contig60273.13565.1 ID=mRNA_H-elongata_contig60273.13565.1|Name=mRNA_H-elongata_contig60273.13565.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig60273:1854..3062+ (Himanthalia elongata Himel1 dioecious)
ATGCTCAGCATGGGACACGTGCTGATTCCACAAAGCGACCTGCGGTACTC
CAAGCAGACGGACGTCGGAGTCACCCACTTCCGATCCGGCATGAGCCACG
AGGAGGAACAGCTCATTCCTAACCTTTTCCGATACCTCCAGATGCTCAGC
ATGGGACACGTGCTGATTCCACAAAGCGACCTGCGGTACTCCAAGCAGAC
GGACGTCGGAGTCACCCACTTCCGATCCGGCATGAGCCACGAGGAGGAAC
AGCTCATTCCTAACCTTTTCCGATACCTCCAGCCGTGGGAGAGCGAGTTC
GTGGACAGCCAACGCGTTTGGGCAGAGTACGCCCTAAAAAAACAGGAAGC
GGTTGCCCAGAATCGGCGTTTAACGCTGGAGGATCTCGAAGACTCCTGGG
ACAGGGGGATTCCCCGCATCAACACGCTCTTCCAAAAGGTATAGCCGTGG
GAGAGCGAGTTCGTGGACAGCCAACGCGTTTGGGCAGAGTACGCCCTAAA
AAAACAGGAAGCGGTTGCCCAGAATCGGCGTTTAACGCTGGAGGATCTCG
AAGACTCCTGGGACAGGGGGATTCCCCGCATCAACACGCTCTTCCAAAAG
GTATAG
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