prot_H-elongata_contig60273.13564.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig60273.13564.1
Unique Name	prot_H-elongata_contig60273.13564.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	100

Homology

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A0D2IVU7_9CHLO (Putative Pre-mRNA-splicing factor 8 like protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2IVU7_9CHLO)

HSP 1 Score: 174 bits (440), Expect = 2.590e-52
Identity = 85/94 (90.43%), Postives = 92/94 (97.87%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            QAFLRVDD +++TFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTY+REAV+ TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY+PK
Sbjct:   88 QAFLRVDDEALKTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYYREAVIHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYSPK 181

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.140e-52
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAV+STQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1334 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1427

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.130e-51
Identity = 89/94 (94.68%), Postives = 94/94 (100.00%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            QAFLRVDDTSIRTFENR+RQ+LMSSGSTTFTKIANKWNTALIGLMTYFREAV++TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1273 QAFLRVDDTSIRTFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVINTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1366

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: T1GJN1_MEGSC (U5_2-snRNA_bdg domain-containing protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GJN1_MEGSC)

HSP 1 Score: 168 bits (425), Expect = 1.680e-50
Identity = 82/94 (87.23%), Postives = 88/94 (93.62%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            Q FLRVDD S+  F NR+RQ+LM+SGSTTFTKI NKWNTALIGLMTYFREAVV+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:   39 QCFLRVDDESLGRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 132

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A7S3ZNT2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNT2_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.300e-50
Identity = 89/94 (94.68%), Postives = 93/94 (98.94%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            QAFLRVD+ S+RTFENR+RQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVV+TQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1268 QAFLRVDEQSLRTFENRVRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1361

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: F0YIE3_AURAN (MPN domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIE3_AURAN)

HSP 1 Score: 179 bits (454), Expect = 3.300e-50
Identity = 89/94 (94.68%), Postives = 93/94 (98.94%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            QAFLRVD+ S+RTFENR+RQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVV+TQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1264 QAFLRVDEQSLRTFENRVRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1357

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A0S7ETQ1_9TELE (PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ETQ1_9TELE)

HSP 1 Score: 169 bits (427), Expect = 3.300e-50
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            Q FLRVDD S++ F NR+RQ+LM+SGSTTFTKI NKWNTALIGLMTYFREAVV+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:    7 QCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 100

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A822GTF2_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822GTF2_9BILA)

HSP 1 Score: 167 bits (423), Expect = 5.030e-50
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            Q FLRVDD S+  + NR+RQ+LM+SGSTTFTKI NKWNTALIGLMTYFREAVV+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:   68 QCFLRVDDESMNRYHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 161

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A3P6P388_ANISI (U5_2-snRNA_bdg domain-containing protein (Fragment) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A3P6P388_ANISI)

HSP 1 Score: 166 bits (419), Expect = 1.480e-49
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            Q FL+VD+ S+  F NRIRQ+LMSSGSTTFTKI NKWNTALIGLMTYFREAVV+TQE+LDLLVKCENKIQTRIKIGLNSKMP+RFPPVVFYTPK
Sbjct:  119 QCFLKVDEESLLKFHNRIRQILMSSGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPARFPPVVFYTPK 212

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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A7S3Y066_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y066_HETAK)

HSP 1 Score: 176 bits (447), Expect = 2.890e-49
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0

Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 94
            Q FLRVDD S+R FENRIRQ+LMSSGSTTFTKIANKWNTALIGLMTYFREAVV+TQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:  822 QCFLRVDDYSLRQFENRIRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 915

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot

BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2IVU7_9CHLO	2.590e-52	90.43	Putative Pre-mRNA-splicing factor 8 like protein n...	[more]
A0A6H5K085_9PHAE	3.140e-52	98.94	MPN domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A836C932_9STRA	5.130e-51	94.68	NUC071 domain-containing protein n=1 Tax=Tribonema...	[more]
T1GJN1_MEGSC	1.680e-50	87.23	U5_2-snRNA_bdg domain-containing protein n=1 Tax=M...	[more]
A0A7S3ZNT2_9STRA	3.300e-50	94.68	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]
F0YIE3_AURAN	3.300e-50	94.68	MPN domain-containing protein n=1 Tax=Aureococcus ...	[more]
A0A0S7ETQ1_9TELE	3.300e-50	87.23	PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica Tax...	[more]
A0A822GTF2_9BILA	5.030e-50	86.17	Hypothetical protein (Fragment) n=1 Tax=Rotaria sp...	[more]
A0A3P6P388_ANISI	1.480e-49	86.17	U5_2-snRNA_bdg domain-containing protein (Fragment...	[more]
A0A7S3Y066_HETAK	2.890e-49	93.62	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019581	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding	PFAM	PF10597	U5_2-snRNA_bdg	coord: 1..94 e-value: 2.6E-51 score: 173.2
IPR042516	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily	GENE3D	1.20.58.1750		coord: 1..77 e-value: 4.1E-41 score: 141.6
IPR027652	Pre-mRNA-processing-splicing factor 8	PANTHER	PTHR11140	PRE-MRNA SPLICING FACTOR PRP8	coord: 1..94

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig60273	contig	H-elongata_contig60273:431..1474 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig60273.13564.1	mRNA_H-elongata_contig60273.13564.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig60273 431..1474 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig60273.13564.1 ID=prot_H-elongata_contig60273.13564.1|Name=mRNA_H-elongata_contig60273.13564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFRE
AVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKACLID*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019581	Prp8_U5-snRNA-bd
IPR042516	Prp8_U5-snRNA-bd_sf
IPR027652	PRP8