mRNA_H-elongata_contig60264.13562.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60264.13562.1
Unique NamemRNA_H-elongata_contig60264.13562.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60264.13562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60264contigH-elongata_contig60264:740..2135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_000500.1
Exons2
Model size676
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.569474-CDS-H-elongata_contig60264:739..9941622930976.569474-CDS-H-elongata_contig60264:739..994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60264 740..994 -
1691679647.8516455-CDS-H-elongata_contig60264:739..9941691679647.8516455-CDS-H-elongata_contig60264:739..994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60264 740..994 -
1622930976.5902607-CDS-H-elongata_contig60264:1715..21351622930976.5902607-CDS-H-elongata_contig60264:1715..2135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60264 1716..2135 -
1691679647.862535-CDS-H-elongata_contig60264:1715..21351691679647.862535-CDS-H-elongata_contig60264:1715..2135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60264 1716..2135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60264.13562.1prot_H-elongata_contig60264.13562.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60264 740..2135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60264.13562.1

>prot_H-elongata_contig60264.13562.1 ID=prot_H-elongata_contig60264.13562.1|Name=mRNA_H-elongata_contig60264.13562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp
PKETIERHTSGALKGTGPRGRVVAVATDRRRAERAVARDGDGDNNKDPRE
AQKARWVRQMQEQVIQQQHAAPTRRVCPAVDKRTGSATSCRHDYDVKSSP
IKTSQRQRPNPLIGGTEFVHDRDEEYVRPEPRTPVTALQHSTQGAPSNRM
KLQPGRGSQERERRRTVELLEISSSSSLDSNSDGKDEPQEYPSRSSCSGA
SILHQPQSNLRDRDANWASCRQSKG
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mRNA from alignment at H-elongata_contig60264:740..2135-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60264.13562.1 ID=mRNA_H-elongata_contig60264.13562.1|Name=mRNA_H-elongata_contig60264.13562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1396bp|location=Sequence derived from alignment at H-elongata_contig60264:740..2135- (Himanthalia elongata Himel1 dioecious)
CCGAAGGAGACCATCGAGAGGCACACCTCCGGAGCGCTGAAGGGAACCGG
GCCCCGCGGTCGTGTGGTTGCCGTGGCCACAGACAGACGGCGTGCAGAGA
GGGCTGTTGCTCGTGATGGTGATGGTGATAATAATAAGGATCCTCGAGAA
GCACAAAAAGCGCGCTGGGTTAGGCAAATGCAGGAACAGGTAATACAACA
GCAGCACGCAGCACCGACACGGCGGGTATGTCCAGCCGTCGATAAAAGAA
CCGGATCAGCCACAAGTTGTCGACATGATTATGATGTTAAAAGCAGCCCG
ATAAAAACGAGCCAGCGGCAGCGTCCGAATCCACTGATCGGTGGAACGGA
GTTTGTGCACGATCGAGACGAAGAATATGTTCGACCAGAACCGAGGACGC
CAGTCACGGCGCTCCAGCACGTGAGTGTACTTGGCCGTCCAAACAATCCC
CGCACGACGTTTAGGGAGATCACGGCGATCAGGGAGACATGTAGACCGAC
AGACAGATGCACACGACAGGGTCTTCATTCCACTTCCTTCAGGACTCGTC
GATTGTACTATACTATACTGTAGTTCTTCTCAAGAACTACCTCGCCTCTC
TGTAATGTATTATGTCTGTCTATTTCATCTGATTTAATTCTCACATAATC
TGAAGTCAAAATCAAAATCTAGCCCGTGGTCACAACTTATAACCAACACC
ATCCGGAAGGAAAAAACGTTCGACCCACTCTCCAATGCAATATATTTGTA
TTTCCAGAAAGACGCATACATACAATATAATGCAATGCTGTGATACTGTT
ATGCTGTTATACTGTTATGCTACAATAAGCAATGGTATAATTCGCAATGT
TGTAATACTGCAACGCTGTAGTCTACAGCTACAAAATGAAAAATATATAC
CTGCTACTAGTCTTTTTTATAGTATAATGATACTGTATCGTGTTCTCATC
GTTTAATTTCCCTCGAAGAGGCAATATCGTCCGCCGCTCGCTCGAAGTTT
GAAGTCGTGATGACGTGGTGAGGCTTTTTTGTTTGACTCTACCGAAAGAG
AGTGTACCCCCTACAGAATTGAGCTATTTTCATTGTACTACTTGTATCCT
TAATCGATTTGGTGCCCAACGCCGTGTTTGGCCTTCGACAGTCGACGCAG
GGTGCTCCCAGCAATAGGATGAAGTTACAGCCAGGTAGGGGTTCTCAGGA
ACGGGAGCGGCGACGTACAGTCGAGCTTCTGGAGATATCAAGCTCATCAT
CGCTAGACTCAAACAGCGATGGAAAGGACGAACCACAGGAGTATCCCAGC
AGGAGCAGCTGCAGTGGCGCTTCCATTCTCCATCAGCCGCAGTCGAACCT
TCGTGATCGTGACGCAAACTGGGCCAGCTGCAGGCAGTCGAAGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig60264:740..2135-

>mRNA_H-elongata_contig60264.13562.1 ID=mRNA_H-elongata_contig60264.13562.1|Name=mRNA_H-elongata_contig60264.13562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig60264:740..2135- (Himanthalia elongata Himel1 dioecious)
CCGAAGGAGACCATCGAGAGGCACACCTCCGGAGCGCTGAAGGGAACCGG
GCCCCGCGGTCGTGTGGTTGCCGTGGCCACAGACAGACGGCGTGCAGAGA
GGGCTGTTGCTCGTGATGGTGATGGTGATAATAATAAGGATCCTCGAGAA
GCACAAAAAGCGCGCTGGGTTAGGCAAATGCAGGAACAGGTAATACAACA
GCAGCACGCAGCACCGACACGGCGGGTATGTCCAGCCGTCGATAAAAGAA
CCGGATCAGCCACAAGTTGTCGACATGATTATGATGTTAAAAGCAGCCCG
ATAAAAACGAGCCAGCGGCAGCGTCCGAATCCACTGATCGGTGGAACGGA
GTTTGTGCACGATCGAGACGAAGAATATGTTCGACCAGAACCGAGGACGC
CAGTCACGGCGCTCCAGCACCCGAAGGAGACCATCGAGAGGCACACCTCC
GGAGCGCTGAAGGGAACCGGGCCCCGCGGTCGTGTGGTTGCCGTGGCCAC
AGACAGACGGCGTGCAGAGAGGGCTGTTGCTCGTGATGGTGATGGTGATA
ATAATAAGGATCCTCGAGAAGCACAAAAAGCGCGCTGGGTTAGGCAAATG
CAGGAACAGGTAATACAACAGCAGCACGCAGCACCGACACGGCGGGTATG
TCCAGCCGTCGATAAAAGAACCGGATCAGCCACAAGTTGTCGACATGATT
ATGATGTTAAAAGCAGCCCGATAAAAACGAGCCAGCGGCAGCGTCCGAAT
CCACTGATCGGTGGAACGGAGTTTGTGCACGATCGAGACGAAGAATATGT
TCGACCAGAACCGAGGACGCCAGTCACGGCGCTCCAGCACTCGACGCAGG
GTGCTCCCAGCAATAGGATGAAGTTACAGCCAGGTAGGGGTTCTCAGGAA
CGGGAGCGGCGACGTACAGTCGAGCTTCTGGAGATATCAAGCTCATCATC
GCTAGACTCAAACAGCGATGGAAAGGACGAACCACAGGAGTATCCCAGCA
GGAGCAGCTGCAGTGGCGCTTCCATTCTCCATCAGCCGCAGTCGAACCTT
CGTGATCGTGACGCAAACTGGGCCAGCTGCAGGCAGTCGAAGGGATCGAC
GCAGGGTGCTCCCAGCAATAGGATGAAGTTACAGCCAGGTAGGGGTTCTC
AGGAACGGGAGCGGCGACGTACAGTCGAGCTTCTGGAGATATCAAGCTCA
TCATCGCTAGACTCAAACAGCGATGGAAAGGACGAACCACAGGAGTATCC
CAGCAGGAGCAGCTGCAGTGGCGCTTCCATTCTCCATCAGCCGCAGTCGA
ACCTTCGTGATCGTGACGCAAACTGGGCCAGCTGCAGGCAGTCGAAGGGA
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