mRNA_H-elongata_contig60232.13559.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: D7FLP7_ECTSI (Enoyl-CoA hydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP7_ECTSI) HSP 1 Score: 201 bits (511), Expect = 1.830e-62 Identity = 100/138 (72.46%), Postives = 115/138 (83.33%), Query Frame = 1
Query: 16 GVISVDINNPKANALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPR 429
GV+ +++ NPKANALG L+ ELEDA + +S D SVR+VV +S VPGVFCAGADLKERA M++ E FV RLR+LM+KVA IP PTIA EGAAFGGGLELML+CD+RV G KATMGLTETSLGIIPGAGGTQRLPR
Sbjct: 13 GVVRLEMKNPKANALGLKLISELEDAVEAVSRDGSVRSVVLSSGVPGVFCAGADLKERAVMTKPEAELFVVRLRSLMSKVASIPAPTIAVAEGAAFGGGLELMLACDVRVVGAKATMGLTETSLGIIPGAGGTQRLPR 150
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: A0A674MDQ0_TAKRU (AU RNA binding protein/enoyl-CoA hydratase n=1 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674MDQ0_TAKRU) HSP 1 Score: 163 bits (412), Expect = 3.120e-47 Identity = 79/144 (54.86%), Postives = 108/144 (75.00%), Query Frame = 1
Query: 1 LLFVPGVISVDINNPKA-NALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPR 429
L++V G++ V IN PKA NA+ +LVK + +A Q+I + VR+V+ S VPG+FCAGADLKERA M + FV++ R L++++ ++P+PTIAA++G+A GGGLE+ LSCD+R+A A MGL ET L IIPGAGGTQRLPR
Sbjct: 26 LVYVSGIVVVGINRPKAKNAISKNLVKLMFEAVQDIKKNNKVRSVIICSVVPGIFCAGADLKERAKMQQSEVGPFVSKARALISEIGNLPMPTIAAIDGSALGGGLEMALSCDIRIASSTAKMGLVETKLAIIPGAGGTQRLPR 169
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: A0A4X2KVX4_VOMUR (Uncharacterized protein n=2 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2KVX4_VOMUR) HSP 1 Score: 160 bits (406), Expect = 7.180e-47 Identity = 84/147 (57.14%), Postives = 104/147 (70.75%), Query Frame = 1
Query: 1 LLFVPG---VISVDINNPKA-NALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPR 429
++F PG +I + +N P+A NALG V EL DA E+ DKS+R VVF S + GVFCAGADLKER M FV +LR+LM+++A P PTIAA++G A GGGLEL L+CD+RVA A MGL ETS G++PGAGGTQRLPR
Sbjct: 13 VIFSPGSLGIIEILMNRPQARNALGKVFVSELSDALDELRLDKSIRVVVFKSGIKGVFCAGADLKEREQMGEAEVAAFVHKLRSLMSQIATFPAPTIAAIDGFALGGGLELALACDLRVAASSAIMGLIETSRGLLPGAGGTQRLPR 159
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: A0A6U3BPQ0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3BPQ0_9EUKA) HSP 1 Score: 161 bits (408), Expect = 1.760e-46 Identity = 82/139 (58.99%), Postives = 104/139 (74.82%), Query Frame = 1
Query: 16 GVISVDINNPKA-NALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPR 429
G++ + +N PKA NALG +LV +E+ E+ DKSVR VV SA PG+FCAGADLKERA M + FV RLR L++ ++D+P+P IAA++GAA GGGLE+ L+CD+RVA +A MGL ET L IIPGAGGTQRLPR
Sbjct: 44 GIVELAMNRPKARNALGKNLVGMMEETLSELKFDKSVRVVVVRSANPGMFCAGADLKERAAMPPEEVGPFVARLRGLVSSISDMPMPVIAAIDGAALGGGLEMALACDLRVASSEAKMGLVETRLAIIPGAGGTQRLPR 182
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: H3CNS1_TETNG (AU RNA binding protein/enoyl-CoA hydratase n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CNS1_TETNG) HSP 1 Score: 161 bits (408), Expect = 2.280e-46 Identity = 78/139 (56.12%), Postives = 105/139 (75.54%), Query Frame = 1
Query: 16 GVISVDINNPKA-NALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPR 429
G++ V IN PKA NA+ +LVK + +A Q++ D VR+V+F S VPG+FCAGADLKERA M FV++ R L++++ ++P+PTIAA++G+A GGGLE+ LSCD+R+A + A MGL ET L IIPGAGGTQRLPR
Sbjct: 54 GIVVVGINRPKAKNAISRNLVKLMFEALQDVRKDNQVRSVIFCSLVPGIFCAGADLKERAKMQPSEVAPFVSKARALISEIGNLPMPTIAAIDGSALGGGLEMALSCDIRIASDSAQMGLVETRLAIIPGAGGTQRLPR 192
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: A0A4W3HVW0_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3HVW0_CALMI) HSP 1 Score: 162 bits (409), Expect = 2.480e-46 Identity = 79/139 (56.83%), Postives = 104/139 (74.82%), Query Frame = 1
Query: 16 GVISVDINNPKA-NALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPR 429
G+ ++ + P A N+LG LVK+L +A +++ HDKSVR V+F S V GVFCAGADLKERA MS FV +LR+LMN +A +P+PTIAAV+G A GGGLEL ++CD+R+A A MGL E + G++PGAGG+QRLPR
Sbjct: 71 GIAAILLRRPHARNSLGNTLVKQLREAVEDLRHDKSVRVVLFKSEVKGVFCAGADLKERAKMSNPEAAHFVHKLRSLMNDIASLPMPTIAAVDGFALGGGLELAMACDLRIAASSAMMGLIEVTRGLLPGAGGSQRLPR 209
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: UPI0010A7E746 (methylglutaconyl-CoA hydratase, mitochondrial isoform X1 n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0010A7E746) HSP 1 Score: 159 bits (403), Expect = 3.780e-46 Identity = 78/141 (55.32%), Postives = 104/141 (73.76%), Query Frame = 1
Query: 16 GVISVDINNPKA-NALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPRPM 435
G++ + +N P+A NAL ++L+K+L + + + DK VR V+ S VPGVFCAGADLKERA M FV+++R ++N++A +PVPTIAA++G A GGGLEL L+CD+RVA A MGL ET L IIPGAGGTQRLPR +
Sbjct: 8 GIVVLGLNRPQAKNALSWNLIKQLSQSLEALKSDKKVRTVIVRSEVPGVFCAGADLKERAKMEAGQVGAFVSKVRGVINELAQLPVPTIAALDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRTV 148
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: H0YQ75_TAEGU (Uncharacterized protein n=15 Tax=Neognathae TaxID=8825 RepID=H0YQ75_TAEGU) HSP 1 Score: 160 bits (406), Expect = 3.900e-46 Identity = 81/142 (57.04%), Postives = 100/142 (70.42%), Query Frame = 1
Query: 13 PGVISVDINNPKA-NALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPRPM 435
PG++ + +N A NAL +LVK + A + DK VR VVF S VPG+FCAGADLKERA M FV+R R +N++A++PVPTIAA++G A GGGLEL L+CD+RVA A MGL ET L IIPGAGGTQRLPR +
Sbjct: 47 PGIVVLGLNRSHAKNALSKNLVKMMSKAVDALKSDKKVRTVVFRSEVPGIFCAGADLKERAKMHSSEVSSFVSRARATINELANLPVPTIAAIDGTALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRTI 188
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: A0A3Q1CU59_AMPOC (AU RNA binding methylglutaconyl-CoA hydratase n=5 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q1CU59_AMPOC) HSP 1 Score: 160 bits (406), Expect = 6.820e-46 Identity = 78/139 (56.12%), Postives = 104/139 (74.82%), Query Frame = 1
Query: 16 GVISVDINNPKA-NALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPR 429
G++ V +N PKA NA+ +LVK + DA ++I + VR+V+F S VPG+FCAGADLKERA M + FV++ R L+ ++ ++PVPTIAA++GAA GGGLE+ L+CD+R+A A MGL ET L IIPGAGGTQRLPR
Sbjct: 70 GIVVVGMNRPKAKNAISRNLVKMMFDAVEDIKKNNKVRSVIFCSLVPGIFCAGADLKERAKMQQSEVGAFVSKARALITELGNLPVPTIAAIDGAALGGGLEMALACDIRIASNTAKMGLVETKLAIIPGAGGTQRLPR 208
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Match: A0A3P8T3F7_AMPPE (AU RNA binding protein/enoyl-CoA hydratase n=2 Tax=Pomacentridae TaxID=30863 RepID=A0A3P8T3F7_AMPPE) HSP 1 Score: 160 bits (406), Expect = 6.820e-46 Identity = 78/139 (56.12%), Postives = 104/139 (74.82%), Query Frame = 1
Query: 16 GVISVDINNPKA-NALGFDLVKELEDAAQEISHDKSVRAVVFTSAVPGVFCAGADLKERANMSRDNTERFVTRLRTLMNKVADIPVPTIAAVEGAAFGGGLELMLSCDMRVAGEKATMGLTETSLGIIPGAGGTQRLPR 429
G++ V +N PKA NA+ +LVK + DA ++I + VR+V+F S VPG+FCAGADLKERA M + FV++ R L+ ++ ++PVPTIAA++GAA GGGLE+ L+CD+R+A A MGL ET L IIPGAGGTQRLPR
Sbjct: 70 GIVVVGMNRPKAKNAISKNLVKMMFDAVEDIKKNNKVRSVIFCSLVPGIFCAGADLKERAKMQQSEVVAFVSKARALITELGNLPVPTIAAIDGAALGGGLEMALACDIRIASNTAKMGLVETKLAIIPGAGGTQRLPR 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60232.13559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60232.13559.1 >prot_H-elongata_contig60232.13559.1 ID=prot_H-elongata_contig60232.13559.1|Name=mRNA_H-elongata_contig60232.13559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp LLFVPGVISVDINNPKANALGFDLVKELEDAAQEISHDKSVRAVVFTSAVback to top mRNA from alignment at H-elongata_contig60232:344..1769- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60232.13559.1 ID=mRNA_H-elongata_contig60232.13559.1|Name=mRNA_H-elongata_contig60232.13559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1426bp|location=Sequence derived from alignment at H-elongata_contig60232:344..1769- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60232:344..1769- >mRNA_H-elongata_contig60232.13559.1 ID=mRNA_H-elongata_contig60232.13559.1|Name=mRNA_H-elongata_contig60232.13559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig60232:344..1769- (Himanthalia elongata Himel1 dioecious)back to top |