prot_H-elongata_contig60213.13557.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60213.13557.1
Unique Nameprot_H-elongata_contig60213.13557.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length70
Homology
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BLAST of mRNA_H-elongata_contig60213.13557.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.230e-36
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYALFDALAKHRGVETIARGRGKRILSLQREMAGRFA 69
            MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYA+FDALAKHRG+E+IARGRGKRILSLQREMAGRFA
Sbjct:  302 MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370
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BLAST of mRNA_H-elongata_contig60213.13557.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.680e-36
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:    2 RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYALFDALAKHRGVETIARGRGKRILSLQREMAGRFA 69
            RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYA+FDALAKHRG+E+IARGRGKRILSLQREMAGRFA
Sbjct:  235 RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302
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BLAST of mRNA_H-elongata_contig60213.13557.1 vs. uniprot
Match: D7FIU8_ECTSI (Ribosomal_S5_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 7.720e-25
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 0 
Query:   21 CKIIGRRNKYSMIYALFDALAKHRGVETIARGRGKRILSLQREMAGRFA 69
            CKIIGRRNKYSMIYA+FDALAKHRG+E+IARGRGKRILSLQREMAGRFA
Sbjct:    3 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60213.13557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTY3_ECTSI1.230e-3695.65S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTY0_ECTSI1.680e-3695.59S5 DRBM domain-containing protein n=2 Tax=Ectocarp... [more]
D7FIU8_ECTSI7.720e-2593.88Ribosomal_S5_C domain-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 1..53
e-value: 2.2E-12
score: 46.2
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 1..62
e-value: 1.9E-11
score: 45.3
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 2..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60213contigH-elongata_contig60213:817..1317 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60213.13557.1mRNA_H-elongata_contig60213.13557.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60213 817..1317 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60213.13557.1 ID=prot_H-elongata_contig60213.13557.1|Name=mRNA_H-elongata_contig60213.13557.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYALFDALAKHRGVETIA
RGRGKRILSLQREMAGRFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005324Ribosomal_S5_C
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR020568Ribosomal_S5_D2-typ_fold