mRNA_H-elongata_contig60213.13557.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60213.13557.1
Unique NamemRNA_H-elongata_contig60213.13557.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60213.13557.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.230e-36
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYALFDALAKHRGVETIARGRGKRILSLQREMAGRFA 207
            MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYA+FDALAKHRG+E+IARGRGKRILSLQREMAGRFA
Sbjct:  302 MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370
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BLAST of mRNA_H-elongata_contig60213.13557.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.680e-36
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    4 RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYALFDALAKHRGVETIARGRGKRILSLQREMAGRFA 207
            RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYA+FDALAKHRG+E+IARGRGKRILSLQREMAGRFA
Sbjct:  235 RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302
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BLAST of mRNA_H-elongata_contig60213.13557.1 vs. uniprot
Match: D7FIU8_ECTSI (Ribosomal_S5_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 7.720e-25
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:   61 CKIIGRRNKYSMIYALFDALAKHRGVETIARGRGKRILSLQREMAGRFA 207
            CKIIGRRNKYSMIYA+FDALAKHRG+E+IARGRGKRILSLQREMAGRFA
Sbjct:    3 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60213.13557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTY3_ECTSI1.230e-3695.65S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTY0_ECTSI1.680e-3695.59S5 DRBM domain-containing protein n=2 Tax=Ectocarp... [more]
D7FIU8_ECTSI7.720e-2593.88Ribosomal_S5_C domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60213contigH-elongata_contig60213:817..1317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog2880.D7FTY3
Preferred nameMRPS5
KEGG koko:K02988,ko:K14026
KEGG Pathwayko03010,ko04141,map03010,map04141
KEGG ModuleM00178,M00179,M00403
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG2646@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S5, C-terminal
Ec32 orthologEc-00_000840.1
Exons2
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.8643458-CDS-H-elongata_contig60213:816..8761622930975.8643458-CDS-H-elongata_contig60213:816..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60213 817..876 +
1691679647.6471915-CDS-H-elongata_contig60213:816..8761691679647.6471915-CDS-H-elongata_contig60213:816..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60213 817..876 +
1622930975.8906288-CDS-H-elongata_contig60213:1167..13171622930975.8906288-CDS-H-elongata_contig60213:1167..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60213 1168..1317 +
1691679647.65715-CDS-H-elongata_contig60213:1167..13171691679647.65715-CDS-H-elongata_contig60213:1167..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60213 1168..1317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60213.13557.1prot_H-elongata_contig60213.13557.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60213 817..1317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60213.13557.1

>prot_H-elongata_contig60213.13557.1 ID=prot_H-elongata_contig60213.13557.1|Name=mRNA_H-elongata_contig60213.13557.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYALFDALAKHRGVETIA
RGRGKRILSLQREMAGRFA*
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mRNA from alignment at H-elongata_contig60213:817..1317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60213.13557.1 ID=mRNA_H-elongata_contig60213.13557.1|Name=mRNA_H-elongata_contig60213.13557.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig60213:817..1317+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGCAGGCAAACTGTCTCGAGACATCTTGTACAACATGGGCATCAC
TGACGGCGCGGTGGGGGCATTTTGTACGACATTTCGTAGAACATTTTACA
TTCAAATAGCAGGATACAATTTCAATTACACCAGACTATCAATCTCAACC
ACCTTCTCTCACAAAATGACCACCTGACAAGCATTGATATCTCTTGTGGC
AGACTAAACCTTTAATTAAGCTAGCATAGTTCTTACTTGCAATGAGATAT
ATCCATCCCCCACCCCCCAAAACGCAATCCGACATTCCCTACTCTACTTG
CCGGTGTCGTTTCTCTGCCGCTCTTACCCTTCTATTAACATCTTCCTCCA
GTGCAAGATTATAGGCAGGCGAAACAAGTACTCTATGATCTACGCATTAT
TTGATGCTCTCGCCAAGCACCGGGGTGTGGAGACCATAGCTCGAGGTCGA
GGCAAGCGTATCTTATCTCTACAGAGAGAAATGGCTGGGCGTTTTGCTTA
A
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Coding sequence (CDS) from alignment at H-elongata_contig60213:817..1317+

>mRNA_H-elongata_contig60213.13557.1 ID=mRNA_H-elongata_contig60213.13557.1|Name=mRNA_H-elongata_contig60213.13557.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig60213:817..1317+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGCAGGCAAACTGTCTCGAGACATCTTGTACAACATGGGCATCAC
TGACGGCGCGATGAGGGCAGGCAAACTGTCTCGAGACATCTTGTACAACA
TGGGCATCACTGACGGCGCGTGCAAGATTATAGGCAGGCGAAACAAGTAC
TCTATGATCTACGCATTATTTGATGCTCTCGCCAAGCACCGGGGTGTGGA
GACCATAGCTCGAGGTCGAGGCAAGCGTATCTTATCTCTACAGAGAGAAA
TGGCTGGGCGTTTTGCTTAATGCAAGATTATAGGCAGGCGAAACAAGTAC
TCTATGATCTACGCATTATTTGATGCTCTCGCCAAGCACCGGGGTGTGGA
GACCATAGCTCGAGGTCGAGGCAAGCGTATCTTATCTCTACAGAGAGAAA
TGGCTGGGCGTTTTGCTTAA
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