mRNA_H-elongata_contig60205.13556.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60205.13556.1
Unique NamemRNA_H-elongata_contig60205.13556.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60205.13556.1 vs. uniprot
Match: D7FRM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM4_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 2.500e-95
Identity = 152/206 (73.79%), Postives = 174/206 (84.47%), Query Frame = 1 
Query:    1 LQVSRPGSVMYFACRIFNVVGTSNSKAFATVKKGHNLLHLLLSMLAWCVRCTDPPFPGGEDRLKLMVQVLQGLFLLGARLTTEEKNKNKAALEGENMKRLGYVLVDILHLDHQHLDAFMAKLQALNLMLDMPDSFAEVLIEYGCLPRILQILELQLVRQAYREGGGIDAAAELTPALLVLNKIVLASEKSRTAVKAAIFPPEADAV 618
            LQ SRP SV+YFACRIFNVVG+SN  AF  +KK  +LL LLLS+LA CVRCT PPFPGGEDR+KLMVQ LQGLFLLG R T EEK K   ALEG+ MKRLGYVLVDILHLDH  +D FMAKLQ LNL+LDMP  FAEVL+E+GCLPR++Q++ELQLVRQ +++GG +DAAAELTP LLVLNK+VLASE+S+ AVK AIFPPEAD V
Sbjct:  157 LQASRPASVLYFACRIFNVVGSSNPTAFNELKKKQDLLLLLLSVLAGCVRCTHPPFPGGEDRVKLMVQALQGLFLLGVRFTQEEKKK---ALEGDTMKRLGYVLVDILHLDHAEIDVFMAKLQVLNLLLDMPGGFAEVLLEHGCLPRVVQLVELQLVRQEFQDGG-VDAAAELTPGLLVLNKMVLASEESKMAVKRAIFPPEADEV 358
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BLAST of mRNA_H-elongata_contig60205.13556.1 vs. uniprot
Match: A0A7S2XIN1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIN1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.960e-16
Identity = 54/182 (29.67%), Postives = 100/182 (54.95%), Query Frame = 1 
Query:   91 VKKGHNLLHLLLSMLAWCVRCTDPPFPG---GEDRLKLMVQVLQGLFLL-GARLTTEEKNKNKAALEG---ENMKRLGYVLVDILHLDHQHLDAFMAKLQALNLMLDMPDSFAEVLIEYGCLPRILQILELQLVRQAYREGGGIDA-AAELTPALLVLNKIVLASEKSRTAVKAAIFPPEAD 612
            VK G ++  +L+  L W ++ ++P FPG    + R  L +++L+ L+ L   ++   ++       E    +NMK++G +L  IL+L +++   +  KL A+NL++D P  +A++L+  G +P +L IL+LQ+ +    EGG   + A  + P L V+N+   A+   +  VK  +FP   D
Sbjct:  341 VKGGTDITSVLVETLTWTIK-SEPSFPGDASSDRRADLALEILRVLYALRNGQIAGSQRGSFSEIQEKRIEDNMKKMGALLCAILNLPNENKQVYDVKLAAINLLMDAPIEYAQILLTNGNIPSLLMILDLQVTKVVVEEGGAKTSNATSIIPILAVMNRFSAANPCIQNIVKEDVFPTNHD 521
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60205.13556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRM4_ECTSI2.500e-9573.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XIN1_9STRA5.960e-1629.67Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60205contigH-elongata_contig60205:211..2960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue3.3e-13
Seed eggNOG ortholog35128.Thaps5615
Preferred nameRIC8B
GOsGO:0000226,GO:0000278,GO:0001667,GO:0001701,GO:0001703,GO:0001944,GO:0001965,GO:0003008,GO:0003674,GO:0005085,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005818,GO:0005819,GO:0005828,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007155,GO:0007163,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007193,GO:0007275,GO:0007369,GO:0007399,GO:0007405,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008047,GO:0008104,GO:0008150,GO:0008277,GO:0008283,GO:0008306,GO:0008356,GO:0008542,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009966,GO:0009968,GO:0009987,GO:0010004,GO:0010646,GO:0010648,GO:0015630,GO:0016020,GO:0016043,GO:0016477,GO:0017145,GO:0019899,GO:0022008,GO:0022402,GO:0022610,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030198,GO:0030234,GO:0030695,GO:0031647,GO:0032501,GO:0032502,GO:0032878,GO:0033036,GO:0034613,GO:0036445,GO:0040001,GO:0040011,GO:0042074,GO:0043009,GO:0043062,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043473,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048066,GO:0048103,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048598,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0050821,GO:0050877,GO:0050890,GO:0050896,GO:0050931,GO:0051020,GO:0051179,GO:0051234,GO:0051293,GO:0051301,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051674,GO:0051716,GO:0055057,GO:0060259,GO:0060589,GO:0061351,GO:0065007,GO:0065008,GO:0065009,GO:0070285,GO:0070586,GO:0070727,GO:0071711,GO:0071840,GO:0071944,GO:0072089,GO:0072358,GO:0072359,GO:0072697,GO:0090036,GO:0090038,GO:0098609,GO:0098742,GO:0098772,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1902531,GO:1902532,GO:1902850,GO:1903047,GO:1990778,GO:2000114
EggNOG free text desc.cell-cell adhesion involved in gastrulation
EggNOG OGs2XDTP@2836,KOG4464@1,KOG4464@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-12_002500.1
Exons6
Model size618
Cds size591
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.662583-UTR-H-elongata_contig60205:210..2371622930975.662583-UTR-H-elongata_contig60205:210..237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60205 211..237 +
1691679647.5675251-UTR-H-elongata_contig60205:210..2371691679647.5675251-UTR-H-elongata_contig60205:210..237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60205 211..237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.6829531-CDS-H-elongata_contig60205:237..3391622930975.6829531-CDS-H-elongata_contig60205:237..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 238..339 +
1691679647.5877855-CDS-H-elongata_contig60205:237..3391691679647.5877855-CDS-H-elongata_contig60205:237..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 238..339 +
1622930975.7308817-CDS-H-elongata_contig60205:808..9281622930975.7308817-CDS-H-elongata_contig60205:808..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 809..928 +
1691679647.6039002-CDS-H-elongata_contig60205:808..9281691679647.6039002-CDS-H-elongata_contig60205:808..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 809..928 +
1622930975.7473667-CDS-H-elongata_contig60205:1117..11641622930975.7473667-CDS-H-elongata_contig60205:1117..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 1118..1164 +
1691679647.6137378-CDS-H-elongata_contig60205:1117..11641691679647.6137378-CDS-H-elongata_contig60205:1117..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 1118..1164 +
1622930975.7656796-CDS-H-elongata_contig60205:1728..18011622930975.7656796-CDS-H-elongata_contig60205:1728..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 1729..1801 +
1691679647.622047-CDS-H-elongata_contig60205:1728..18011691679647.622047-CDS-H-elongata_contig60205:1728..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 1729..1801 +
1622930975.782938-CDS-H-elongata_contig60205:2101..22231622930975.782938-CDS-H-elongata_contig60205:2101..2223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 2102..2223 +
1691679647.6302676-CDS-H-elongata_contig60205:2101..22231691679647.6302676-CDS-H-elongata_contig60205:2101..2223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 2102..2223 +
1622930975.8046052-CDS-H-elongata_contig60205:2833..29601622930975.8046052-CDS-H-elongata_contig60205:2833..2960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 2834..2960 +
1691679647.6381671-CDS-H-elongata_contig60205:2833..29601691679647.6381671-CDS-H-elongata_contig60205:2833..2960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60205 2834..2960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60205.13556.1prot_H-elongata_contig60205.13556.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60205 238..2960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60205.13556.1

>prot_H-elongata_contig60205.13556.1 ID=prot_H-elongata_contig60205.13556.1|Name=mRNA_H-elongata_contig60205.13556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
MYFACRIFNVVGTSNSKAFATVKKGHNLLHLLLSMLAWCVRCTDPPFPGG
EDRLKLMVQVLQGLFLLGARLTTEEKNKNKAALEGENMKRLGYVLVDILH
LDHQHLDAFMAKLQALNLMLDMPDSFAEVLIEYGCLPRILQILELQLVRQ
AYREGGGIDAAAELTPALLVLNKIVLASEKSRTAVKAAIFPPEADAV
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mRNA from alignment at H-elongata_contig60205:211..2960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60205.13556.1 ID=mRNA_H-elongata_contig60205.13556.1|Name=mRNA_H-elongata_contig60205.13556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2750bp|location=Sequence derived from alignment at H-elongata_contig60205:211..2960+ (Himanthalia elongata Himel1 dioecious)
TTGCAGGTTTCTCGACCAGGATCTGTAATGTACTTCGCGTGTCGCATCTT
TAACGTCGTGGGGACGTCGAATTCCAAGGCCTTCGCGACCGTGAAGAAAG
GACACAACTTGCTACATCTACTGCTCTCGGTTAGAGTTAGAATTAGAATT
AGAACTGATTGCTTCATTGGACGGTTCAAACTGATTGTCGATTGGCACCC
AATTGCTGCGCATTACTTGCTTTGCCTTTAGGGTTAGGGTTAGTATTAGG
GTTAGGGTTAGTATTAGGGTTAGGGTTAGTATTGGCACTACTGGTACTAC
TGTCCGCGTTCAGTCCCGCATTTTTGCATTGATGTGCTTGATTATCTTGC
TCGCGAGGCGTTTCGATTAAATCCTTGATCAGTTTTTAATTTCGCACAGT
TGTAAGCCCTACGCAGTCAACGGTCTTTTTCTTGTTGTGTCTGCTCTGCC
TTGCTTTATCTTGCTATGTACGTCTTACTGTACTAAAATTATGTTTACCG
TTAGGGCTAGGGTCAGGGTGGCATTGTGTACGTCACGAGACTTGCTGGGC
CTAAATAAAAAATGAATGATTTTTATTATTATTATTTCTGACCCGCAGAT
GCTGGCATGGTGTGTACGATGCACGGACCCACCGTTCCCAGGAGGAGAGG
ATCGCCTAAAGCTTATGGTACAGGTTCTACAGGGACTTTTTCTTCTGGGA
GCGCGACTCACAACAGAGGTAACAGAGGTACCTCCCGGCATTTCTCGTGC
TAGGCCGACTGCAGACCTCTCACCTAACAACATTCGTAGTGGCGTAGCTC
TCGAGTATACTCATCAATGTCGGTTGATTTTTTATTTTAATTGCTTGCCG
CGTGATATCGCTACCGCAATTGAAAAATAACGCAACCGCAAAATGTCACC
AAAACAGGAAAAAAACAAAAACAAGGCGGCCTTGGAAGGCGAAAATATGA
AACGGTGAGCAAGCGTTGTGAGTACTGTATCAGTGAATCCATAAACCTCA
GCTCGCCTCCATGATACGGTAGGATACGGTACTGTTTAATAGCTTGCTGT
TCAAGGTAGGATACGGTAGAGCTAAGAGCCATTGCTTATTTTTCCGGCCG
AAGCCTTCGGGTGAGGGTGAGGGTTAGCCCTAACCCATACCAAAGCCCGC
GTATATCGATTTTACGCTCCATTCATTTCCTGCTCCGATGTGCAATCGCC
ATTTCTTTTTATTGTGATGTATTATGATTGATTCTAATTTATTATGCCTT
CTGGCTAATGACTAATGGCTACTGGCTACGTCTGAGCAACTCAGATCTCG
ATGAAGCTGCAGCCGCTTCTGCTGTATAGGAGTAATAATAATGATGAAAT
AACAATCAAGCTTGCCGAAGAAAGCGCTTTCGATATACCATTACGAGCCA
TTCCGTTGCCACCCCCTCCAACCCAAATTGGAGACGCAAAATATGAAATT
CCAAGGTGAAACTCCTACGTCGGCTGCCGTTTGCCCGCCATTACCATATA
CCATATACATATATTAAGGCTGGGATATGTGTTGGTGGACATTCTCCATT
TGGATCATCAACATCTCGACGCCTTTATGGCTAAGCTCCAGGTGTGACCA
GTACTCCGCCATTTGGATCATCAGCATCCCAACTTAGGCGTCCCAACTTA
GGCGAGTTGTTCTCTCCTCTCTCCTAGCCTTAAGCTGGAAAGTGACAAGC
GCTTTCCCTGTATGGCGTATTTCATCGGGTGGGGGGTCATTTTGTGGCAT
ATACCTCGTCTAAGCGGTAATATACCCTCGTTTTGGTATATAGCCGTTTG
AAATGTGTGGCGTTTTCATCGGCTGACAAACCTATTATCCGGTTAGTGCA
GTGGAAAACTTAATGCTATTTTCGACCGCGAACCACCGCAGGCTCTCAAT
TTGATGCTGGACATGCCAGACAGCTTTGCGGAGGTTTTGATCGAATATGG
ATGCCTTCCACGGATCCTTCAGATTTTAGAGCTGCAGCTCGTGCGACAAG
CTTATCGCGAGGGGTGAGCGTTGGGGATGGCATGAGAGGAGTACCGATAA
CGGTAGAGCTAACGCAGTCCGTCCCGAACGTGTTTCACGTGAAATTTATC
CCACTCTTTTGAGGAAATCCTATCGAGGATATCGCTTCGGCATCTGGAGC
ACCCACGTTTGCCATTTTCCTGGTACAGTATCCTTTACCTTACTATCAGT
ACATTATGATGCCATACAGACGGTAGAGAAGTATTTTATTATGGCACAGC
CTGTTTGTTTCCCCTTGATGTCCCTCTATGTGTTGATCGTTATTATTAAT
AGCCTAATTAATGCCTAGCATAATTGACAGTATAATCAATAGCACAATTA
ATAGTCTAATTAATATCCTAGTTATTAGCCTTATTGTTAGCACTAATAAT
AGCATCATTAGTAGCATAATGAGGAGCATAATTAGGCTCTATTGGGTGGG
ATCCTTTTAGTTGCCACATACCGCCCGTGCTTTAGAGGCCGGAATTGTTT
CACGTTTCACGCTTGAATCTTTTCACACTTAGAGCTAGCCCTAACCCTAA
CCCTAATCTAAATGCTACAACAATAACTAATGATAACGTAATAACATAAT
CATTAATATACGCTGCACGTTAGGGGCGGTATAGATGCTGCTGCTGAGCT
CACCCCCGCGCTGCTGGTACTGAACAAGATCGTTCTTGCGTCGGAGAAGT
CTCGGACGGCCGTGAAGGCGGCTATCTTTCCTCCCGAGGCTGATGCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig60205:211..2960+

>mRNA_H-elongata_contig60205.13556.1 ID=mRNA_H-elongata_contig60205.13556.1|Name=mRNA_H-elongata_contig60205.13556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig60205:211..2960+ (Himanthalia elongata Himel1 dioecious)
ATGTACTTCGCGTGTCGCATCTTTAACGTCGTGGGGACGTCGAATTCCAA
GGCCTTCGCGACCGTGAAGAAAGGACACAACTTGCTACATCTACTGCTCT
CGATGTACTTCGCGTGTCGCATCTTTAACGTCGTGGGGACGTCGAATTCC
AAGGCCTTCGCGACCGTGAAGAAAGGACACAACTTGCTACATCTACTGCT
CTCGATGCTGGCATGGTGTGTACGATGCACGGACCCACCGTTCCCAGGAG
GAGAGGATCGCCTAAAGCTTATGGTACAGGTTCTACAGGGACTTTTTCTT
CTGGGAGCGCGACTCACAACAGAGATGCTGGCATGGTGTGTACGATGCAC
GGACCCACCGTTCCCAGGAGGAGAGGATCGCCTAAAGCTTATGGTACAGG
TTCTACAGGGACTTTTTCTTCTGGGAGCGCGACTCACAACAGAGGAAAAA
AACAAAAACAAGGCGGCCTTGGAAGGCGAAAATATGAAACGGAAAAAAAC
AAAAACAAGGCGGCCTTGGAAGGCGAAAATATGAAACGGCTGGGATATGT
GTTGGTGGACATTCTCCATTTGGATCATCAACATCTCGACGCCTTTATGG
CTAAGCTCCAGGCTGGGATATGTGTTGGTGGACATTCTCCATTTGGATCA
TCAACATCTCGACGCCTTTATGGCTAAGCTCCAGGCTCTCAATTTGATGC
TGGACATGCCAGACAGCTTTGCGGAGGTTTTGATCGAATATGGATGCCTT
CCACGGATCCTTCAGATTTTAGAGCTGCAGCTCGTGCGACAAGCTTATCG
CGAGGGGCTCTCAATTTGATGCTGGACATGCCAGACAGCTTTGCGGAGGT
TTTGATCGAATATGGATGCCTTCCACGGATCCTTCAGATTTTAGAGCTGC
AGCTCGTGCGACAAGCTTATCGCGAGGGGGGCGGTATAGATGCTGCTGCT
GAGCTCACCCCCGCGCTGCTGGTACTGAACAAGATCGTTCTTGCGTCGGA
GAAGTCTCGGACGGCCGTGAAGGCGGCTATCTTTCCTCCCGAGGCTGATG
CGGTGGGGCGGTATAGATGCTGCTGCTGAGCTCACCCCCGCGCTGCTGGT
ACTGAACAAGATCGTTCTTGCGTCGGAGAAGTCTCGGACGGCCGTGAAGG
CGGCTATCTTTCCTCCCGAGGCTGATGCGGTG
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