mRNA_H-elongata_contig60167.13551.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60167.13551.1
Unique NamemRNA_H-elongata_contig60167.13551.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig60167.13551.1 vs. uniprot
Match: A0A6H5KKL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.120e-6
Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:  883 WPEYPWWPVFVDAIETALGSMALEELNDRMEV 978
            WPEYPWWPV  DAIETAL SM LEELN RM +
Sbjct: 1989 WPEYPWWPVLADAIETALRSMTLEELNSRMSM 2020
[Close]
BLAST of mRNA_H-elongata_contig60167.13551.1 vs. uniprot
Match: D7FUD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.170e-6
Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:  883 WPEYPWWPVFVDAIETALGSMALEELNDRMEV 978
            WPEYPWWPV  DAIETAL SM LEELN RM +
Sbjct: 4039 WPEYPWWPVLADAIETALRSMTLEELNSRMSM 4070
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60167.13551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKL5_9PHAE1.120e-678.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD9_ECTSI1.170e-678.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60167contigH-elongata_contig60167:95..1950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1002
Cds size1002
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.2055628-CDS-H-elongata_contig60167:94..5741622930975.2055628-CDS-H-elongata_contig60167:94..574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60167 95..574 -
1691679647.4535432-CDS-H-elongata_contig60167:94..5741691679647.4535432-CDS-H-elongata_contig60167:94..574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60167 95..574 -
1622930975.226014-CDS-H-elongata_contig60167:1428..19501622930975.226014-CDS-H-elongata_contig60167:1428..1950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60167 1429..1950 -
1691679647.4638727-CDS-H-elongata_contig60167:1428..19501691679647.4638727-CDS-H-elongata_contig60167:1428..1950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60167 1429..1950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60167.13551.1prot_H-elongata_contig60167.13551.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60167 95..1950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60167.13551.1

>prot_H-elongata_contig60167.13551.1 ID=prot_H-elongata_contig60167.13551.1|Name=mRNA_H-elongata_contig60167.13551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=334bp
DVLLSSPLLNAVKNEVNVDSNIGGGELDIMELSEEEGDKTAGVRGPIPSR
PKEDAAEAAEEGERDSIVNGLASANSNRHQETRLGESVGPIESGVLRLSS
SSLEARGDKTADVVGATICLRFLEDGVEAPEQGRVNNVANVLDRGDVCKI
RGRRPEDSEDTTSREALGLSSSSEYEKHDFEPMRLARPQNGPWMAQENQG
SERNAEAADSSTSISAATEEGSYGVRSGGNRGNKVDLRSESHCRGSGKGS
AWGADQLVKDQEGDSSHMEDNGRDREEEDGQEEDRSRHQKKKTRWPEYPW
WPVFVDAIETALGSMALEELNDRMEVKMILRDA*
back to top

mRNA from alignment at H-elongata_contig60167:95..1950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60167.13551.1 ID=mRNA_H-elongata_contig60167.13551.1|Name=mRNA_H-elongata_contig60167.13551.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1856bp|location=Sequence derived from alignment at H-elongata_contig60167:95..1950- (Himanthalia elongata Himel1 dioecious)
GATGTATTACTATCTTCCCCTCTGCTGAACGCGGTGAAGAATGAGGTCAA
TGTAGATTCGAATATCGGAGGCGGAGAGCTTGATATAATGGAGCTCTCTG
AAGAGGAAGGCGATAAAACCGCTGGTGTCAGGGGTCCGATACCGTCGAGA
CCAAAGGAAGACGCCGCGGAAGCAGCGGAGGAAGGAGAAAGGGATAGTAT
TGTCAACGGATTGGCTTCTGCCAATAGCAACCGACACCAAGAAACACGCC
TTGGGGAGTCAGTGGGGCCGATTGAAAGTGGAGTATTGAGGTTATCTTCG
TCGTCGTTGGAGGCGAGAGGCGACAAAACTGCCGATGTCGTCGGAGCCAC
GATTTGTTTGAGATTTTTAGAAGACGGCGTCGAAGCACCGGAGCAAGGGA
GGGTAAACAATGTTGCCAATGTGTTGGATCGAGGCGATGTCTGCAAAATA
CGAGGAAGGCGCCCCGAGGATTCGGAGGATACGACTTCTCGAGAAGCGCT
GGGTCTATCGTCGTCGTCGGAGGTGAGAAGTAACGAAACCGTCGCTGTCG
TGGGACCCGAGTGTTATCGAGACTGGAGGACGAACTCGAAATAATCGGAG
AAGAGGGGTTCAACGATGGCGATGGATTTGCTCTATATGTCTGTGCCGAG
ATGGAGATCATCGTGGCGTCCGGTGTCAGAGAGCGCGCTCTACTGGTCAC
GACGAGGACCTTCCATTGGTCTCGTGATCACCTTGCCGTATCGACCTGAG
CATCCTCGCTGACGTAAACCGCAATGATAGTCGCTATCTCGAGACATATA
AACAGAGCCAATACATTCCCCTGGTTAACTGCCTATTACTTGGCTTCTTC
GGCATATACTCTAGTGACGAGAATGAGCAGGATGGCATGAGCGAGCACAT
TGACCCCAAAATGGTTGAGCGTTTGTTCTCGGGGTGCGAGCATCATCGGC
TTAAAATGCTGCCAGGTTTCCCCCTTCATACATATTCACTTTTATTTTGA
AGATACAGAATATACGATGGGAGGTTAAATCACCGAAGTTATGCTCAGCC
GATAAGCACCGATACCCTGTGAGAGACGCCCTTTCAGGTGGTTCCCCAAC
ATGTATATAAGTTGCAAGAATGCGAATAGAACCTAGTCGTTGTCGGCGAA
CGTTGCAATCGATGTCTTTTCCCGTTAGTTGGTGAGAGTTTGTAATCATA
AATACGTAAATCTTCCGCTGGCGTTCTTTTGATGTACCAGCACAGCTCGT
TGTTGATATCCTTCGCTGCGGAGCAATCTTGACAGGCGGTGCTCAAACCT
CGCACTTACACGGGGCTCGACAATCCAAAATCCCTTCATACCTGGTCTTT
GAACCGTCCCATTTTGTCTTTCTCAGTACGAAAAGCACGACTTCGAGCCC
ATGCGACTCGCTCGACCCCAAAATGGGCCGTGGATGGCCCAAGAAAACCA
AGGTTCAGAGAGAAATGCCGAGGCTGCCGACTCGTCCACGTCAATATCCG
CAGCGACAGAGGAAGGGAGTTACGGCGTGCGTTCGGGTGGTAATCGCGGG
AACAAGGTCGACTTGAGGTCAGAGTCACACTGCCGAGGCAGTGGGAAAGG
GAGCGCATGGGGAGCGGATCAACTTGTTAAAGATCAAGAGGGAGATTCTT
CGCATATGGAAGACAACGGGCGCGATCGGGAGGAAGAGGACGGACAGGAA
GAAGATAGGTCACGGCATCAAAAGAAAAAAACGAGGTGGCCGGAGTACCC
GTGGTGGCCAGTTTTTGTCGATGCCATTGAGACAGCGCTGGGTTCGATGG
CCCTAGAAGAGCTCAACGATCGAATGGAGGTGAAGATGATATTAAGGGAC
GCATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig60167:95..1950-

>mRNA_H-elongata_contig60167.13551.1 ID=mRNA_H-elongata_contig60167.13551.1|Name=mRNA_H-elongata_contig60167.13551.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2004bp|location=Sequence derived from alignment at H-elongata_contig60167:95..1950- (Himanthalia elongata Himel1 dioecious)
GATGTATTACTATCTTCCCCTCTGCTGAACGCGGTGAAGAATGAGGTCAA
TGTAGATTCGAATATCGGAGGCGGAGAGCTTGATATAATGGAGCTCTCTG
AAGAGGAAGGCGATAAAACCGCTGGTGTCAGGGGTCCGATACCGTCGAGA
CCAAAGGAAGACGCCGCGGAAGCAGCGGAGGAAGGAGAAAGGGATAGTAT
TGTCAACGGATTGGCTTCTGCCAATAGCAACCGACACCAAGAAACACGCC
TTGGGGAGTCAGTGGGGCCGATTGAAAGTGGAGTATTGAGGTTATCTTCG
TCGTCGTTGGAGGCGAGAGGCGACAAAACTGCCGATGTCGTCGGAGCCAC
GATTTGTTTGAGATTTTTAGAAGACGGCGTCGAAGCACCGGAGCAAGGGA
GGGTAAACAATGTTGCCAATGTGTTGGATCGAGGCGATGTCTGCAAAATA
CGAGGAAGGCGCCCCGAGGATTCGGAGGATACGACTTCTCGAGAAGCGCT
GGGTCTATCGTCGTCGTCGGAGGATGTATTACTATCTTCCCCTCTGCTGA
ACGCGGTGAAGAATGAGGTCAATGTAGATTCGAATATCGGAGGCGGAGAG
CTTGATATAATGGAGCTCTCTGAAGAGGAAGGCGATAAAACCGCTGGTGT
CAGGGGTCCGATACCGTCGAGACCAAAGGAAGACGCCGCGGAAGCAGCGG
AGGAAGGAGAAAGGGATAGTATTGTCAACGGATTGGCTTCTGCCAATAGC
AACCGACACCAAGAAACACGCCTTGGGGAGTCAGTGGGGCCGATTGAAAG
TGGAGTATTGAGGTTATCTTCGTCGTCGTTGGAGGCGAGAGGCGACAAAA
CTGCCGATGTCGTCGGAGCCACGATTTGTTTGAGATTTTTAGAAGACGGC
GTCGAAGCACCGGAGCAAGGGAGGGTAAACAATGTTGCCAATGTGTTGGA
TCGAGGCGATGTCTGCAAAATACGAGGAAGGCGCCCCGAGGATTCGGAGG
ATACGACTTCTCGAGAAGCGCTGGGTCTATCGTCGTCGTCGGAGTACGAA
AAGCACGACTTCGAGCCCATGCGACTCGCTCGACCCCAAAATGGGCCGTG
GATGGCCCAAGAAAACCAAGGTTCAGAGAGAAATGCCGAGGCTGCCGACT
CGTCCACGTCAATATCCGCAGCGACAGAGGAAGGGAGTTACGGCGTGCGT
TCGGGTGGTAATCGCGGGAACAAGGTCGACTTGAGGTCAGAGTCACACTG
CCGAGGCAGTGGGAAAGGGAGCGCATGGGGAGCGGATCAACTTGTTAAAG
ATCAAGAGGGAGATTCTTCGCATATGGAAGACAACGGGCGCGATCGGGAG
GAAGAGGACGGACAGGAAGAAGATAGGTCACGGCATCAAAAGAAAAAAAC
GAGGTGGCCGGAGTACCCGTGGTGGCCAGTTTTTGTCGATGCCATTGAGA
CAGCGCTGGGTTCGATGGCCCTAGAAGAGCTCAACGATCGAATGGAGGTG
AAGATGATATTAAGGGACGCATGATACGAAAAGCACGACTTCGAGCCCAT
GCGACTCGCTCGACCCCAAAATGGGCCGTGGATGGCCCAAGAAAACCAAG
GTTCAGAGAGAAATGCCGAGGCTGCCGACTCGTCCACGTCAATATCCGCA
GCGACAGAGGAAGGGAGTTACGGCGTGCGTTCGGGTGGTAATCGCGGGAA
CAAGGTCGACTTGAGGTCAGAGTCACACTGCCGAGGCAGTGGGAAAGGGA
GCGCATGGGGAGCGGATCAACTTGTTAAAGATCAAGAGGGAGATTCTTCG
CATATGGAAGACAACGGGCGCGATCGGGAGGAAGAGGACGGACAGGAAGA
AGATAGGTCACGGCATCAAAAGAAAAAAACGAGGTGGCCGGAGTACCCGT
GGTGGCCAGTTTTTGTCGATGCCATTGAGACAGCGCTGGGTTCGATGGCC
CTAGAAGAGCTCAACGATCGAATGGAGGTGAAGATGATATTAAGGGACGC
ATGA
back to top