mRNA_H-elongata_contig60144.13549.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60144.13549.1
Unique NamemRNA_H-elongata_contig60144.13549.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: D8LF83_ECTSI (Putative respiratory burst oxidase homolog protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF83_ECTSI)

HSP 1 Score: 392 bits (1007), Expect = 6.940e-130
Identity = 182/228 (79.82%), Postives = 206/228 (90.35%), Query Frame = 1
Query:    1 QMSFEARKGMHMLFLLLLVCLCFHSGTFRYVGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYHYKAGSYIYVNCPAIDRGEWHPFSLIPVPGINSRAAFYAEAVGDWTTELFRLGLRNPSHPLWITAAQPSPVETTLYYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKS 684
            +M+F+ RK MHMLFL++LV LCFHS  FRYV  IL++WY++D  YFITKQT+LVSHPT+EAIGRGTMVGIDLPEGY +KAGSYIYVNCPAIDR EWHPFSLIPVPG+ SRAAFYAEAVGDWT +LFRLGL NPS PLWITAAQPS +ETTL+YDNVLLICTGAG+TPA+AVA+RF+ KKNIHLMWIARDHGMMALFEKQLR+V STVHLTG P EE+K AMS+L S+S
Sbjct:  275 KMTFQFRKRMHMLFLVMLVALCFHSVVFRYVASILLLWYLIDNFYFITKQTFLVSHPTYEAIGRGTMVGIDLPEGYTFKAGSYIYVNCPAIDRAEWHPFSLIPVPGVTSRAAFYAEAVGDWTKDLFRLGLANPSQPLWITAAQPSLIETTLFYDNVLLICTGAGITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQLRMVTSTVHLTGNPDEEIKDAMSKLLSRS 502          
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.690e-94
Identity = 136/228 (59.65%), Postives = 174/228 (76.32%), Query Frame = 1
Query:    1 QMSFEARKGMHMLFLLLLVCLCFHSGTFRYVGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYHYKAGSYIYVNCPAIDRGEWHPFSLIPVPGINSRAAFYAEAVGDWTTELFRLGLRNPSHPLWITAAQPSPVETTLYYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKS 684
            Q++FE RK +H+LF+  ++ +CFH    + +G IL+ WY+LD+LYF TK T+L+S P ++ +GRGT+V  +LP GY YK G+Y+ VNCPAI   EWHPFSL PVPG   RA F+ EAVGDWT E+FR  L NP  PLWITAAQPS +E T+Y++NVLL+CTGAG+TPA++VAERF KKKNIHL+W  RD GM+A+FEKQLR V STV LTGKPT + K+ M  L + S
Sbjct:  404 QLTFEVRKYLHLLFMPFMIAVCFHGRALQILGAILLAWYLLDRLYFTTKMTFLLSSPVYKPVGRGTLVRFELPPGYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGPRPRAGFHVEAVGDWTNEMFRFCLENPQMPLWITAAQPSVMEKTVYFENVLLVCTGAGITPAVSVAERFQKKKNIHLLWCCRDAGMVAMFEKQLRRVKSTVFLTGKPTNKTKKRMVDLLAPS 631          
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 7.820e-82
Identity = 124/228 (54.39%), Postives = 162/228 (71.05%), Query Frame = 1
Query:    1 QMSFEARKGMHMLFLLLLVCLCFHSGTFRYVGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYHYKAGSYIYVNCPAIDRGEWHPFSLIPVPGINSRAAFYAEAVGDWTTELFRLGLRNPSHPLWITAAQPSPVETTLYYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKS 684
            +++FEARK +H+LF+  ++ +CFH    + +G IL+ WY+LD+LYF TK T+L+S P ++ +GRGT+V  +LP GY YK G+Y+ VNCPAI   EWHPFSL PVPG   RA F+ EAVGDWT E+FR  L NP  PLWITAAQPS VE T+Y+DN         ++ A+ +   F KKKNIHL+W  RD GM+A+FEKQLR V STV+LTGKPT + K+ M  L + S
Sbjct:  392 KLTFEARKYLHLLFIPFMIAVCFHGRALQILGAILLAWYLLDRLYFTTKMTFLLSSPVYKPVGRGTLVRFELPPGYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGSRPRAGFHVEAVGDWTNEMFRFCLENPQMPLWITAAQPSVVEKTMYFDNE------PSISEAIELEPVFQKKKNIHLLWCCRDAGMVAMFEKQLRRVKSTVYLTGKPTNKTKKRMVDLLAPS 613          
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.620e-79
Identity = 120/227 (52.86%), Postives = 156/227 (68.72%), Query Frame = 1
Query:    4 MSFEARKGMHMLFLLLLVCLCFHSGTFRYVGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYHYKAGSYIYVNCPAIDRGEWHPFSLIPVPGINSRAAFYAEAVGDWTTELFRLGLRNPSHPLWITAAQPSPVETTLYYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKS 684
            M+FE RK +HMLF+  +V +CFH      + GIL+ WY++D+ YF T+                         GY +K GSYI VNCPAI   EWHPFS+ PVPG   R  FY EAVGDWT ELFRL L +P  PLWITAAQPS +E ++Y++NV+++CTGAG+TPA+ +A+  SKKKN+HLMW++R+ GM+A FEKQLR VNSTVHLTGKPTE+ K+ ++ L + S
Sbjct:  172 MTFEFRKALHMLFIPFMVAMCFHGKVLAVLAGILVAWYLVDRTYFTTRI------------------------GYQFKVGSYIQVNCPAISAKEWHPFSMFPVPGPRPRGGFYVEAVGDWTQELFRLSLDDPCMPLWITAAQPSVLEKSVYFENVIMVCTGAGITPAICLADMLSKKKNVHLMWLSREAGMVATFEKQLRRVNSTVHLTGKPTEKTKQRLTDLLAHS 374          
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: A0A6H5JEC1_9PHAE (FAD_binding_8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 9.450e-55
Identity = 82/154 (53.25%), Postives = 105/154 (68.18%), Query Frame = 1
Query:    4 MSFEARKGMHMLFLLLLVCLCFHSGTFRYVGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYHYKAGSYIYVNCPAIDRGEWHPFSLIPVPGINSRAAFYAEAVGDWTTELFRLGLRNPSHPLWITAAQPSPVETTLYYDN 465
            M+FE RK +HMLF+  +V +CFH      + GIL+ WY++D+ YF T+  + +    F  +GR T+V  DLP GY +  GSYI VNCPAI   EWHPFS+ PVPG   R  FY EAVGDWT ELFRL L +P  PLWITAAQPS +E ++Y++N
Sbjct:  381 MTFEFRKALHMLFIPFMVAMCFHGKVLAVLAGILVAWYLVDRTYFTTRMHFCIERAVFRPVGRATLVRFDLPPGYQFNVGSYIQVNCPAISAKEWHPFSMFPVPGPRPRGGFYVEAVGDWTQELFRLSLEDPCMPLWITAAQPSVLEKSVYFEN 534          
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: A0A7S2A4J8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4J8_TRICV)

HSP 1 Score: 139 bits (350), Expect = 2.440e-34
Identity = 70/219 (31.96%), Postives = 110/219 (50.23%), Query Frame = 1
Query:    1 QMSFEARKGMHMLFLLLLVCLCFHSGTFRYVGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYHYKAGS--YIYVNCPAIDRGEWHPFSLIPVPGINSRAAFYAEAVGDWTTELFRLGLRNPSHPLWITAAQPSPVETTLYYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLRLVN---STVHLTGKPT 642
            ++ +E RKG+H LF +  +C+CFH G   YV G  I  Y LD +Y     T  +   TF+ +  G ++ +++ + +  + G   + YV  P +DR +WH FSL   P   S+   +    GDWT  +     RN   P+W+     SP      YDN +L+ +G G+TPAL+V       +  +L+W  RD  M+  F + L L +   + +  TGK T
Sbjct:  181 KIRYEIRKGLHYLFYVFAICMCFHGGYIGYVLGFCISLYSLDMMYITLFMTEKIETTTFQVLSSGVLMSMNVSKSFQKRGGQGGFAYVCLPWVDRNQWHAFSLFEHPSNPSKRQVFMLKTGDWTRAVHEALQRNTVRPVWVQGPFVSPYSQAEAYDNQILVASGIGITPALSVIRAHRDSRRSNLIWAVRDPSMLQFFLEHLYLDHDGWNLIFYTGKET 399          
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: B8CG47_THAPS (FAD-binding FR-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG47_THAPS)

HSP 1 Score: 127 bits (320), Expect = 2.720e-30
Identity = 72/215 (33.49%), Postives = 106/215 (49.30%), Query Frame = 1
Query:    4 MSFEARKGMHMLFLLLLVCLCFHSGTFRY--------VGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYH--YKAGSYIYVNCPAIDRGEWHPFSLIPVP-GINSRAAFYAEAVG-DWTTELFRLGLRNPSHPLWITAAQPSPVETTLYYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLRLVN 612
            MS+E RKG+H LF L  + +CFH+ T  +        V G  IV+Y LD LY +   T ++    F  +  G  + + + + +   Y  G Y YV  P + + +WH FSL   P   N R  F  +  G DWT  +     RN   P+WI+    SP    L +DN + + +G G+TPAL+V     + + I+L+W  RD  M+  F   L L N
Sbjct:  214 MSYEVRKGLHYLFYLFAIGMCFHNKTSAFPNGGFNQVVLGFCIVYYTLDSLYVMIFMTEMIETTVFNVLPSGVQMTMAVSDHFQKTYAQGGYGYVCLPWVSKYQWHAFSLFEHPTDPNLRQVFMMKVQGGDWTNSVHEQLQRNTVRPVWISGPFVSPYNNALDFDNTICVASGIGITPALSVIRAHRESRRINLIWTCRDVAMLEFFSDHLYLNN 428          
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: A0A7S4FLU6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FLU6_9EUGL)

HSP 1 Score: 127 bits (318), Expect = 6.380e-30
Identity = 69/219 (31.51%), Postives = 116/219 (52.97%), Query Frame = 1
Query:    1 QMSFEARKGMHMLFLLLLVCLCFHS---GTFRYVGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYHYKAGSYIYVNCPAIDRGEWHPFSLIPVPGINSRAAFYAEAVGDWTTELFRLGLRNPS-HPLWITAAQPSPVETTLYYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLRLVNST---VHLTGK 636
            ++S+E RKG+H L  +  + L FH+     F  +  +L+V Y LD LY +  + Y++    F  +  G  +    PEG+  + G Y+ +  P ++R +WH FSL   P   +++  +   VGDWT  L       P+  P W+     SP  T L +DN++L+ +G G+TPA+ V    +K + ++L+W  RD G++  + +QL   NS    ++ TGK
Sbjct:  211 RLSWEVRKGLHHLHWVFGIALAFHAPAVNIFWIMFAVLLV-YGLDALYGLLLKAYIIETAEFTCLKNGVQLRFVNPEGF--RGGGYVLLCVPWLNRHQWHAFSLFSHPTEPNQSCVHISNVGDWTDLLHGSLTERPTCRPCWVQGPFASPYHTALEFDNIILVASGIGITPAIEVINHHAKTRKVNLVWSCRDPGLVQFYLEQLAFTNSAWNLIYYTGK 426          
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: R1FV62_EMIHU (FAD-binding FR-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FV62_EMIHU)

HSP 1 Score: 123 bits (308), Expect = 1.230e-28
Identity = 66/226 (29.20%), Postives = 115/226 (50.88%), Query Frame = 1
Query:    1 QMSFEARKGMHMLFLLLLVCLCFHSGTF--RYVGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYHYKAGSYIYVNCPAIDRGEWHPFSLIPVPGINSRAAFYAEAVGDWTTELFRLGLRNPSHPLWITAAQPSPVETTLYYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLRLVN---STVHLTGKPTEEVKRAM 663
            +M++E RKG+H L ++  + +CFH+      ++ G+ +  Y+ D L     +TY V    F  +  G  +  + P G+H++   Y+ V  P I + +WH FSL       + A     AVGDWT  L          P WI+    SP  T   YDN++L+ +G G+TPAL++   + +K+ ++L+W  RD  ++  +  + +      + ++ TGK   E+ RA+
Sbjct:  187 RMAWEWRKGLHYLSIVWGITICFHAPLMDIAWLMGVPVGMYLADMLIGSVWRTYRVDTSIFYRLENGVELTFEHPPGFHFQGAGYVLVCLPWISQYQWHAFSLFAHSTKPNHACVCMSAVGDWTKSLHAHVQEPTRRPAWISGPFASPYSTAGEYDNLILVASGIGITPALSLITTYKEKRRVNLIWSCRDASLVEFYLDKCQFSTDGWTLIYYTGKRQLELPRAL 412          
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Match: A0A7S4NI13_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NI13_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.410e-28
Identity = 68/212 (32.08%), Postives = 100/212 (47.17%), Query Frame = 1
Query:    1 QMSFEARKGMHMLFLLLLVCLCFH--------SGTFRYVGGILIVWYILDKLYFITKQTYLVSHPTFEAIGRGTMVGIDLPEGYHYKA--GSYIYVNCPAIDRGEWHPFSLIPVPGINSRAAFYAEAVGDWTTELFRLGLRNPSHPLWITAAQPSPVETTLYYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLRL 606
            ++S+E RKG+H LF+L  V LCFH         G      G  I  Y  D  Y     T  +   TF  +  G  + + + E +   +  G + +V  P +D+ +WH FSL   P   S+   +    GDWTT + +   R+   P+WI     SP      YDN +L+ TG G+TPAL+V       + I+L+W  RD  M+  F + L L
Sbjct:  103 KISYEMRKGLHYLFILFAVGLCFHVPMSAIPNGGFIAPAMGFCIFLYAADASYVYLFMTEKIETTTFHVLSSGVRITMPVSETFQKSSEKGGFAFVCLPWVDKLQWHAFSLFEDPSDPSKRQMFMLKTGDWTTAVHKALQRDTVRPVWIQGPFLSPYNYAEMYDNQVLVATGIGITPALSVIRAHKSSRRINLVWAVRDPSMLEFFLEHLYL 314          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60144.13549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF83_ECTSI6.940e-13079.82Putative respiratory burst oxidase homolog protein... [more]
A0A6H5JHI2_9PHAE1.690e-9459.65FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8C8_ECTSI7.820e-8254.39Putative respiratory burst oxidase protein n=1 Tax... [more]
D7G8C4_ECTSI1.620e-7952.86Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JEC1_9PHAE9.450e-5553.25FAD_binding_8 domain-containing protein n=1 Tax=Ec... [more]
A0A7S2A4J8_TRICV2.440e-3431.96Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
B8CG47_THAPS2.720e-3033.49FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A7S4FLU6_9EUGL6.380e-3031.51Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
R1FV62_EMIHU1.230e-2829.20FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A7S4NI13_9STRA1.410e-2832.08Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60144contigH-elongata_contig60144:63..2495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.2
Seed ortholog evalue5.3e-71
Seed eggNOG ortholog2880.D7G8C8
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons7
Model size684
Cds size681
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60144.13549.1prot_H-elongata_contig60144.13549.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60144 66..2495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.8894048-UTR-H-elongata_contig60144:62..651622930974.8894048-UTR-H-elongata_contig60144:62..65Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60144 63..65 +
1691679647.332326-UTR-H-elongata_contig60144:62..651691679647.332326-UTR-H-elongata_contig60144:62..65Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60144 63..65 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.9182963-CDS-H-elongata_contig60144:65..2111622930974.9182963-CDS-H-elongata_contig60144:65..211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 66..211 +
1691679647.3487892-CDS-H-elongata_contig60144:65..2111691679647.3487892-CDS-H-elongata_contig60144:65..211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 66..211 +
1622930974.9434364-CDS-H-elongata_contig60144:464..5361622930974.9434364-CDS-H-elongata_contig60144:464..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 465..536 +
1691679647.3590086-CDS-H-elongata_contig60144:464..5361691679647.3590086-CDS-H-elongata_contig60144:464..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 465..536 +
1622930974.975923-CDS-H-elongata_contig60144:724..8541622930974.975923-CDS-H-elongata_contig60144:724..854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 725..854 +
1691679647.371471-CDS-H-elongata_contig60144:724..8541691679647.371471-CDS-H-elongata_contig60144:724..854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 725..854 +
1622930974.9979455-CDS-H-elongata_contig60144:1137..12521622930974.9979455-CDS-H-elongata_contig60144:1137..1252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 1138..1252 +
1691679647.3801281-CDS-H-elongata_contig60144:1137..12521691679647.3801281-CDS-H-elongata_contig60144:1137..1252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 1138..1252 +
1622930975.0224667-CDS-H-elongata_contig60144:1702..17571622930975.0224667-CDS-H-elongata_contig60144:1702..1757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 1703..1757 +
1691679647.388711-CDS-H-elongata_contig60144:1702..17571691679647.388711-CDS-H-elongata_contig60144:1702..1757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 1703..1757 +
1622930975.0450432-CDS-H-elongata_contig60144:2091..21671622930975.0450432-CDS-H-elongata_contig60144:2091..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 2092..2167 +
1691679647.4036074-CDS-H-elongata_contig60144:2091..21671691679647.4036074-CDS-H-elongata_contig60144:2091..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 2092..2167 +
1622930975.0656383-CDS-H-elongata_contig60144:2408..24951622930975.0656383-CDS-H-elongata_contig60144:2408..2495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 2409..2495 +
1691679647.415758-CDS-H-elongata_contig60144:2408..24951691679647.415758-CDS-H-elongata_contig60144:2408..2495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60144 2409..2495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60144.13549.1

>prot_H-elongata_contig60144.13549.1 ID=prot_H-elongata_contig60144.13549.1|Name=mRNA_H-elongata_contig60144.13549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MSFEARKGMHMLFLLLLVCLCFHSGTFRYVGGILIVWYILDKLYFITKQT
YLVSHPTFEAIGRGTMVGIDLPEGYHYKAGSYIYVNCPAIDRGEWHPFSL
IPVPGINSRAAFYAEAVGDWTTELFRLGLRNPSHPLWITAAQPSPVETTL
YYDNVLLICTGAGVTPALAVAERFSKKKNIHLMWIARDHGMMALFEKQLR
LVNSTVHLTGKPTEEVKRAMSRLFSKS
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mRNA from alignment at H-elongata_contig60144:63..2495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60144.13549.1 ID=mRNA_H-elongata_contig60144.13549.1|Name=mRNA_H-elongata_contig60144.13549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2433bp|location=Sequence derived from alignment at H-elongata_contig60144:63..2495+ (Himanthalia elongata Himel1 dioecious)
CAGATGTCCTTCGAGGCTCGAAAGGGGATGCACATGTTGTTCCTCCTCCT TCTGGTGTGCCTCTGTTTCCACAGCGGTACGTTCCGTTACGTGGGCGGCA TTTTGATCGTTTGGTACATCCTGGACAAGTTATACTTCATCACGAAACAG TGAGTAACTTCAAAACTGTGGTTCTCTACATGATATATGGGTGGTAGTAT CGACGAAATCCAACAGAGTAAAGCCAGTACCGCGGCGCTGAAGTTAGCAA TGGAATTGTGAGGCTCAATATCAATACTAAAATGAACTAAACATCCATAG GAAATATCCCATTAGTGTATCAGGAATGAATATGATTATTCCTCGAGCAC GACCCGCTTATTGAACCTCGAGTGACGCATTCTGCAAAAACGATCGCCAC AGGACTTATCTTGTGTCTCACCCTACCTTCGAGGCGATCGGGCGCGGCAC CATGGTTGGGATCGACCTCCCAGAGTAAGCGGAACCCTGGAGAGCAAAAA TAGTTTATCGAAAAAGTATTGCAGTAATATTCTCACTAGCTCGTTTCCAA CGCATTTTTATAAACAAACGTAATCTCGTGACCATAGCATTTACACCTCA AACCTCCGATTCTTCGCGCCTCACTCATAAATCCCGATTCCGAACCGTTC TGTGCCGTTCAGGGGCTACCATTACAAGGCCGGTTCGTACATCTACGTCA ACTGTCCCGCGATTGACAGGGGAGAGTGGCACCCCTTCTCTCTTATTCCT GTCCCCGGAATTAATTCTAGAGCAGCATTTTACGCCGAGGCGGTGAGCTT TAGACACCCCGCTGAATCTTATCCCTACAAAGTTAGAACTAGAACAACTT TCATAAGATGCTTGTAGGAAATATAGAATGTCGTGTAGCTTTATGTATTT TCCAACTTAGGAAGTTGCCCTTAAGTACCGCCGTACTCTTTAATATCACA GGAGATGCAACCCCGAATGTACCATTATAGTCCAGGTCATTATGTATATA TATATATCTTAACCGTTGTGTTCTATGGGAAGAAACGTCTAATTTTTGTA ACCGCGACGTTGACGATAAGAGCAGGTTGGCGACTGGACCACAGAGTTGT TCCGTCTTGGGCTTAGGAATCCCTCCCACCCTTTGTGGATTACCGCGGCG CAGCCCAGTCCAGTGGAGACGACGCTTTACTACGACAACGGTACGACAAC AGGATGGTGTGGCGAATTATGGGCACCAAGAAAACATAGATGGGCGAAAG CATAGACTTAGGATACCATGATCTTGTCCAAACGTTTACGGAACTGTGGC AAAAACAAGAGTCGTGACCTGAACCAGGACACTTGTACTGTCCCCAATTA TTAGTCGTGGGCTATGCAACCCCGCGACTAACTATGGCTCTCTGACTTAG CGAATTCTTACGCTAGTGGCCCAAGCGATCCATTAACTTGGGGTAGGCTT GGATGCACCAAATATTTCCACCTCTTATCTTTGCTATCGTTGTTATTTTC AGCCTTAACCACCAAACATTTCCGACGCATGCAATGACTCCTTACTCAAC TGTCGTTGTGCATCCGTCCGCTTTCGTAATACGTGGCCTCTTGTACGTGG TGCGTTGGTCGATTGCCCAAATGGCAACGTTTTTGGATAGTTCTGTTAAT CTGCACCGGTGCTGGCGTCACTCCAGCCTTAGCCGTTGCTGAGAGGTGAG TATCCGTCGCCTGCTGACGGATTTTATGCCGTTCTTTGATTTTTACCTCG ATGATGTTAGTTAGTGTTTACGGTCCGAATTCCATCAATAACGGCGCACG GCATACGTAATATGGAAAGATCACAACTCCTCCTAAGCTATACTATGCCT TAGAAACCGGTGCAGTGAAGAGGACGTGAAGACGTCTAACAAAGGCCAAC CGTCAAATATGCCGCACATTTCCACGCGCATCGCGAGCGTTATACGACAT CGTCTTTTACTTGGGACCGCGGTCATCTTTAATAGGCCATCTCGGCGAAT ATGACCAAACTGCGTCACGCGCTTGACAGATTTTCTAAGAAGAAGAATAT CCACCTTATGTGGATTGCCAGGGACCACGGGATGATGGCGCTCTTTGAGA AGCAGGTGGGTTGAAGCCTCCACTACTTTGCGTGAACCGTTTTATAATGA TTTAAGGGGATGCTGTGTTATGGTGCTCTATCTTGTTATTATCCGGATCG CTGGGTGGCATGTACGAACGCTCAAACATTGGAGCTACTTACGTCGCCTA TGGACCGTATATAATCCGTAAACTGTACACCTCACTGCTTATATATCCGT CCGTTACAATGTGCTGTCCCGTTGCCCCATTTCACACTGGTAAAAGCTGA GACTGGTCAATAGCACTGTACACCTCACTGGCAAACCTACCGAGGAGGTT AAACGGGCGATGTCGAGACTGTTTTCCAAGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig60144:63..2495+

>mRNA_H-elongata_contig60144.13549.1 ID=mRNA_H-elongata_contig60144.13549.1|Name=mRNA_H-elongata_contig60144.13549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig60144:63..2495+ (Himanthalia elongata Himel1 dioecious)
ATGTCCTTCGAGGCTCGAAAGGGGATGCACATGTTGTTCCTCCTCCTTCT
GGTGTGCCTCTGTTTCCACAGCGGTACGTTCCGTTACGTGGGCGGCATTT
TGATCGTTTGGTACATCCTGGACAAGTTATACTTCATCACGAAACAATGT
CCTTCGAGGCTCGAAAGGGGATGCACATGTTGTTCCTCCTCCTTCTGGTG
TGCCTCTGTTTCCACAGCGGTACGTTCCGTTACGTGGGCGGCATTTTGAT
CGTTTGGTACATCCTGGACAAGTTATACTTCATCACGAAACAGACTTATC
TTGTGTCTCACCCTACCTTCGAGGCGATCGGGCGCGGCACCATGGTTGGG
ATCGACCTCCCAGAGACTTATCTTGTGTCTCACCCTACCTTCGAGGCGAT
CGGGCGCGGCACCATGGTTGGGATCGACCTCCCAGAGGGCTACCATTACA
AGGCCGGTTCGTACATCTACGTCAACTGTCCCGCGATTGACAGGGGAGAG
TGGCACCCCTTCTCTCTTATTCCTGTCCCCGGAATTAATTCTAGAGCAGC
ATTTTACGCCGAGGCGGGGCTACCATTACAAGGCCGGTTCGTACATCTAC
GTCAACTGTCCCGCGATTGACAGGGGAGAGTGGCACCCCTTCTCTCTTAT
TCCTGTCCCCGGAATTAATTCTAGAGCAGCATTTTACGCCGAGGCGGTTG
GCGACTGGACCACAGAGTTGTTCCGTCTTGGGCTTAGGAATCCCTCCCAC
CCTTTGTGGATTACCGCGGCGCAGCCCAGTCCAGTGGAGACGACGCTTTA
CTACGACAACGGTTGGCGACTGGACCACAGAGTTGTTCCGTCTTGGGCTT
AGGAATCCCTCCCACCCTTTGTGGATTACCGCGGCGCAGCCCAGTCCAGT
GGAGACGACGCTTTACTACGACAACGTTCTGTTAATCTGCACCGGTGCTG
GCGTCACTCCAGCCTTAGCCGTTGCTGAGAGTTCTGTTAATCTGCACCGG
TGCTGGCGTCACTCCAGCCTTAGCCGTTGCTGAGAGATTTTCTAAGAAGA
AGAATATCCACCTTATGTGGATTGCCAGGGACCACGGGATGATGGCGCTC
TTTGAGAAGCAGATTTTCTAAGAAGAAGAATATCCACCTTATGTGGATTG
CCAGGGACCACGGGATGATGGCGCTCTTTGAGAAGCAGCTGAGACTGGTC
AATAGCACTGTACACCTCACTGGCAAACCTACCGAGGAGGTTAAACGGGC
GATGTCGAGACTGTTTTCCAAGTCGCTGAGACTGGTCAATAGCACTGTAC
ACCTCACTGGCAAACCTACCGAGGAGGTTAAACGGGCGATGTCGAGACTG
TTTTCCAAGTCG
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