mRNA_H-elongata_contig60131.13548.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60131.13548.1
Unique NamemRNA_H-elongata_contig60131.13548.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: D8LNS7_ECTSI (Mitogen-activated protein kinase (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS7_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 3.900e-135
Identity = 204/216 (94.44%), Postives = 209/216 (96.76%), Query Frame = 2
Query:  224 LAPQNCDLKLCDFGLSRGVSSSEEEETAELTEYVVTRWYRSPEIMLAAEYGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPELRSPAAGSSLPE 871
            L   NCDLKLCDFGLSRGVSS +EEETAELTEYVVTRWYRSPEIMLAAEYGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKD SEL+FVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLL+RMLVMRPDRRLSVDEALRHPYLRSLRD+KAETTA EPVDF DVELAPLNK+NLRRLMHEDVLAYRPELRSPAAGSSLPE
Sbjct:  253 LLSTNCDLKLCDFGLSRGVSSPDEEETAELTEYVVTRWYRSPEIMLAAEYGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDESELAFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLARMLVMRPDRRLSVDEALRHPYLRSLRDKKAETTALEPVDFADVELAPLNKNNLRRLMHEDVLAYRPELRSPAAGSSLPE 468          
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: D8LNL4_ECTSI (Mitogen-activated protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNL4_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.780e-65
Identity = 118/203 (58.13%), Postives = 146/203 (71.92%), Query Frame = 2
Query:  236 NCDLKLCDFGLSRGVSSSEEEETAELTEYVVTRWYRSPEIMLAAE-YGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPELR 841
            NCDLKLCDFGLSRGV   +E ET +LTEYVVTRWYR+PEIML+ + Y   ID+WSVGCIF EML R+PLF G  Y+  LKLI   +GKP + S++ FVTNP+A++FM  LP+  P +L  +FP   ADAVDLLS+ML++ P+RR+SV++AL HPYL SL D   E  A   VD+  +E   L K NLR L+ EDVL Y PE R
Sbjct:  274 NCDLKLCDFGLSRGVH--DEHETGDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLITSLIGKPTE-SDIWFVTNPRARRFMLGLPDTSPVNLGVKFPDVNADAVDLLSKMLILDPNRRISVEQALEHPYLSSLHDDALEPLAESHVDWQCIEAVELTKHNLRLLIFEDVLHYHPECR 473          
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: A0A7S2CTH5_9STRA (Mitogen-activated protein kinase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTH5_9STRA)

HSP 1 Score: 221 bits (563), Expect = 3.990e-65
Identity = 119/215 (55.35%), Postives = 148/215 (68.84%), Query Frame = 2
Query:  236 NCDLKLCDFGLSRGVSSSEEEETAELTEYVVTRWYRSPEIMLAAE-YGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPELRSPAAGSSLPESS 877
            NCDLKLCDFGLSRG+   E    A LTEYVVTRWYR+PEIML+ + Y   ID+WSVGCIF EML R+P+F G  Y+  LKLI K VG P + SEL FVTN KA +F+  LP+Y   DL + FP+A  + +DLLS+ML++ P RR+SV++AL HPYL  +RD   E  A  PVD+ DVE   LN+DNL RL+ ED +A + E RS    + L  SS
Sbjct:  151 NCDLKLCDFGLSRGLLEGEGTSGANLTEYVVTRWYRAPEIMLSCQDYSCAIDVWSVGCIFGEMLARKPMFPGSDYIHQLKLIMKLVGTPTE-SELWFVTNQKANRFVLSLPKYDKEDLSKSFPNAEREGLDLLSKMLLLDPARRISVEDALAHPYLAEVRDVDCEAVAPGPVDWGDVETCELNRDNLMRLLVEDFVA-QVEARSKFTAADLGGSS 363          
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: A0A6V1P443_HETAK (Mitogen-activated protein kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P443_HETAK)

HSP 1 Score: 221 bits (564), Expect = 1.140e-63
Identity = 113/210 (53.81%), Postives = 144/210 (68.57%), Query Frame = 2
Query:  236 NCDLKLCDFGLSRGVSSSEEEET-AELTEYVVTRWYRSPEIMLAAE-YGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPELRSPAAGS 859
            NCDLKLCDFGLSRG++  E      +LTEYVVTRWYR+PEIML+ + Y   ID+WS+GCIFAEML R+PLF G  Y+  LKLI K VG P +  EL +V NP+A++FM  LP  P  DL  +FP A ADA+DLLS+ML++ P +R++V+E L HPYL SL D   E TA   V++ D+E   L K NL+RL+ EDV  + PE     A +
Sbjct:  268 NCDLKLCDFGLSRGLNDEETPAANGDLTEYVVTRWYRAPEIMLSVQDYSRAIDVWSIGCIFAEMLGRKPLFPGNDYIHQLKLITKVVGTPTE-DELGYVENPRAKRFMLGLPPTPRVDLSTKFPDANADALDLLSKMLILDPSKRINVNECLEHPYLASLHDETLEPTADTNVEWDDIETCELTKKNLQRLIFEDVCHFHPECSEQLAAA 476          
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: A0A835Z2Y5_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y5_9STRA)

HSP 1 Score: 219 bits (559), Expect = 9.090e-63
Identity = 115/211 (54.50%), Postives = 146/211 (69.19%), Query Frame = 2
Query:  236 NCDLKLCDFGLSRGVSSSEEEETAELTEYVVTRWYRSPEIMLAAE-YGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPELRSPAAGSSL 865
            NCDLKLCDFGLSRGV+   E +T +LTEYVVTRWYR+PEIML+ + Y   ID+WSVGCIF EML R+PLF G  Y+  LKLI K +GKP + ++L FV+NP+A++FM  LP+  PADL  RFP A AD + LLSRML +   +R+SV +AL HPYL SL D   E  A   V++ D+E   L K NL+ L+  DVL Y PE     A +++
Sbjct:  267 NCDLKLCDFGLSRGVTG--EHDTVDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFPGNDYIHQLKLITKLIGKPAE-ADLWFVSNPRARRFMLGLPDTAPADLAARFPEASADGIALLSRMLTLDSAKRISVADALAHPYLASLHDATLEPLADSAVNWRDIEEVELTKRNLQLLIFNDVLHYHPECIDQLANANV 474          
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: A0A835ZD69_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD69_9STRA)

HSP 1 Score: 211 bits (536), Expect = 8.960e-59
Identity = 108/214 (50.47%), Postives = 140/214 (65.42%), Query Frame = 2
Query:  236 NCDLKLCDFGLSRGVSSSEEEET--------AELTEYVVTRWYRSPEIMLAAEYGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPELRSPAA 853
            NCDLKLCDFGL+R + ++  ++T          +TEYVVTRW+R+PE+ L A+Y   ID+WS GCI AEM+ ++PLF G    QMLKLI  F GK  D  +LSFV N KA+ ++ ++P+  PADL  +FP A ADA+DLL +ML   PDRR+SV  AL HP+L   R  + E  A  PVD   VE APL +  L+ LM EDV A+RP   +PAA
Sbjct:  261 NCDLKLCDFGLARSLFNTNADDTLSEDDEPGGRMTEYVVTRWWRAPEVFLEAKYNVAIDVWSAGCIMAEMMLKKPLFMGSNTAQMLKLILGFCGKNSDTIDLSFVANRKARTYVSEMPDCAPADLSTKFPDASADALDLLRQMLQFSPDRRISVAAALAHPWLARFRVAEREAPAPAPVDLAAVEAAPLARRALQALMFEDVCAFRPHCAAPAA 474          
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: W7U818_9STRA (Mitogen-activated protein kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U818_9STRA)

HSP 1 Score: 207 bits (526), Expect = 4.660e-57
Identity = 109/211 (51.66%), Postives = 145/211 (68.72%), Query Frame = 2
Query:  224 LAPQNCDLKLCDFGLSRGVSSSEEEETAELTEYVVTRWYRSPEIMLAA-EYGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFMEDLPEYP----PADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPELR 841
            L   NCDLK+CDFGLSRGV     +E ++LTEYVVTRWYR+PEIML+  EY   ID+W+VGCIF EML R+PLF G  Y+  LKLI K VG P    EL+FVTN KA++FM +LP+ P    P++L+ ++P A  +A+ LL +MLV+ P +R++V EAL  PYL SL D   ET A   V + D+E   L+K NL+R + ED++ + PE +
Sbjct:  300 LLNSNCDLKICDFGLSRGVMPVGTQEASDLTEYVVTRWYRAPEIMLSCPEYTTAIDVWAVGCIFGEMLGRKPLFPGNDYIHQLKLITKLVGTPS-AEELAFVTNHKARRFMLNLPKEPQSSLPSNLKSKYPDASPEALSLLRKMLVIDPAKRITVAEALEQPYLASLHDPVVETMADSDVHWGDIESCELSKVNLQRQILEDMIRFHPEAK 509          
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: A0A7S3PAF5_9STRA (Mitogen-activated protein kinase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PAF5_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.580e-55
Identity = 106/222 (47.75%), Postives = 149/222 (67.12%), Query Frame = 2
Query:  182 TCEIRKTSLQFPLDLAPQNCDLKLCDFGLSRGVSSSEEEETAE---LTEYVVTRWYRSPEIMLAA-EYGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGK-PKDLSELSFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRP 832
            +C++    L+    L   NCDLK+CDFGL+RGV  + E+  AE   LTEYVVTRWYR+PEIMLA  EY YPID+WSVGCIFAE++ R+PLF G+ Y+  L +I++ +GK P+D  +L FVT+ KA++FM  L   PP     RFP    DA+D+L +ML + P++R+ VDEAL+HP+   L +   E  +  P DF+  E   L+++ LR+L+ E+V  +RP
Sbjct:  219 SCKVLHRDLKPSNLLVNSNCDLKICDFGLARGVDRATEDGRAETMLLTEYVVTRWYRAPEIMLACHEYSYPIDVWSVGCIFAELILRKPLFPGDDYIDQLTIISEKIGKLPED--DLDFVTSDKAKRFMRKLQNKPPMHFSLRFPGTPMDALDVLRKMLEIHPNKRIGVDEALKHPFFEPLHNPDDEPVSRRPFDFS-FENDKLDRNRLRQLIWEEVGDFRP 437          
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: A0A7S0WMC8_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WMC8_9CHLO)

HSP 1 Score: 191 bits (486), Expect = 1.310e-54
Identity = 104/212 (49.06%), Postives = 139/212 (65.57%), Query Frame = 2
Query:  221 DLAPQN------CDLKLCDFGLSRGVSSSEEEETAELTEYVVTRWYRSPEIMLA-AEYGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPE 835
            DL P N      CDLK+CDFGL+R  +S+E      +TEYVVTRWYR+PE++L+ +EYG  ID+WSVGC+FAE+L R+PLF G+ Y+  L LI K +G P D  EL F+T+ KA++++  LP     DLRR +P A A AVDL+ RMLV  P +R++VD+AL HPYL SL D   E     P DF D++   L  D +R ++  DV+   PE
Sbjct:   31 DLKPSNLLLTASCDLKICDFGLAR--TSTERNF---MTEYVVTRWYRAPELLLSCSEYGTAIDVWSVGCVFAELLGRKPLFPGKDYVHQLNLITKVIGSPSD-GELGFITSDKARRYIRSLPRAERCDLRRLWPHANAQAVDLIDRMLVFDPAKRITVDQALSHPYLASLHDAADEPICPNPFDF-DLDSDALTPDVVREIIIRDVIQMHPE 235          
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Match: A0A1V9YD78_9STRA (Mitogen-activated protein kinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YD78_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.420e-54
Identity = 99/211 (46.92%), Postives = 135/211 (63.98%), Query Frame = 2
Query:  221 DLAPQN------CDLKLCDFGLSRGVSSSEEEETAELTEYVVTRWYRSPEIMLAAEYGYPIDIWSVGCIFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFMEDLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRSLRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPE 835
            DL P N      CD+KLCDFGL+RGV+  +    A LTEYVVTRWYR+PE++L+++Y  P+D+W++GCI AEM+ R PLF G+ YL  LK+I   VG P++  +L F+TNPKA++F+   P+ P   L   +P A A  +DLL +ML   P  R+S+D+AL HPYL  +RD   ET    P DF   E   L +  L+ L+ EDV  + PE
Sbjct:   17 DLKPSNILVNSDCDVKLCDFGLARGVNGVD----AGLTEYVVTRWYRAPELLLSSKYDKPMDVWAIGCILAEMIGRRPLFPGQDYLHQLKIIMDVVGSPEE-DQLDFITNPKAKRFILRQPKKPRVPLSSIYPRATALCLDLLEKMLSFDPRTRISIDDALEHPYLAQVRDASVETACPTPFDFA-FEDCELTRKKLQELIFEDVCHFHPE 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60131.13548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNS7_ECTSI3.900e-13594.44Mitogen-activated protein kinase (Fragment) n=2 Ta... [more]
D8LNL4_ECTSI2.780e-6558.13Mitogen-activated protein kinase n=2 Tax=Ectocarpu... [more]
A0A7S2CTH5_9STRA3.990e-6555.35Mitogen-activated protein kinase n=1 Tax=Florencie... [more]
A0A6V1P443_HETAK1.140e-6353.81Mitogen-activated protein kinase n=1 Tax=Heterosig... [more]
A0A835Z2Y5_9STRA9.090e-6354.50Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
A0A835ZD69_9STRA8.960e-5950.47Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
W7U818_9STRA4.660e-5751.66Mitogen-activated protein kinase n=1 Tax=Nannochlo... [more]
A0A7S3PAF5_9STRA2.580e-5547.75Mitogen-activated protein kinase n=1 Tax=Amphora c... [more]
A0A7S0WMC8_9CHLO1.310e-5449.06Hypothetical protein (Fragment) n=2 Tax=Chlamydomo... [more]
A0A1V9YD78_9STRA1.420e-5446.92Mitogen-activated protein kinase n=1 Tax=Achlya hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60131contigH-elongata_contig60131:612..2500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue2.1e-48
Seed eggNOG ortholog157072.XP_008867581.1
KEGG koko:K04371,ko:K14512
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04075,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04075,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
EggNOG free text desc.MAP kinase activity
EggNOG OGsKOG0660@1,KOG0660@2759
Ec32 ortholog descriptionmitogen-activated protein kinase putative serine/threonine protein kinase
Ec32 orthologEc-08_005990.1
EC2.7.11.24
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size1217
Cds size1110
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60131.13548.1prot_H-elongata_contig60131.13548.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60131 718..2500 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.6470628-UTR-H-elongata_contig60131:611..7171622930974.6470628-UTR-H-elongata_contig60131:611..717Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60131 612..717 +
1691679647.2917585-UTR-H-elongata_contig60131:611..7171691679647.2917585-UTR-H-elongata_contig60131:611..717Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60131 612..717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.6975505-CDS-H-elongata_contig60131:717..10741622930974.6975505-CDS-H-elongata_contig60131:717..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60131 718..1074 +
1691679647.3030024-CDS-H-elongata_contig60131:717..10741691679647.3030024-CDS-H-elongata_contig60131:717..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60131 718..1074 +
1622930974.7318668-CDS-H-elongata_contig60131:1407..16651622930974.7318668-CDS-H-elongata_contig60131:1407..1665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60131 1408..1665 +
1691679647.3126736-CDS-H-elongata_contig60131:1407..16651691679647.3126736-CDS-H-elongata_contig60131:1407..1665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60131 1408..1665 +
1622930974.7544885-CDS-H-elongata_contig60131:2005..25001622930974.7544885-CDS-H-elongata_contig60131:2005..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60131 2006..2500 +
1691679647.322204-CDS-H-elongata_contig60131:2005..25001691679647.322204-CDS-H-elongata_contig60131:2005..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60131 2006..2500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60131.13548.1

>prot_H-elongata_contig60131.13548.1 ID=prot_H-elongata_contig60131.13548.1|Name=mRNA_H-elongata_contig60131.13548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=370bp
MKFSLLTPKSEEMATVLIFNNRPRCTCEIRKTSLQFPLDLAPQNCDLKLC
DFGLSRGVSSSEEEETAELTEYVVTRWYRSPEIMLAAEYGYPIDIWSVGC
IFAEMLRREPLFRGETYLQMLKLIAKFVGKPKDLSELSFVTNPKAQKFME
DLPEYPPADLRRRFPSAGADAVDLLSRMLVMRPDRRLSVDEALRHPYLRS
LRDRKAETTASEPVDFTDVELAPLNKDNLRRLMHEDVLAYRPELRSPAAG
SSLPESSSTAGGREAARDGHHGSRSSSSSSSMPPPPPNGVGGSNGVMAPG
ETTHVSSRVANGGGGPSNAHAGVGSHRERPSRSDREARGGGSGRVTENGN
AGTSSSSRSEGRTYAASRVR
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mRNA from alignment at H-elongata_contig60131:612..2500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60131.13548.1 ID=mRNA_H-elongata_contig60131.13548.1|Name=mRNA_H-elongata_contig60131.13548.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1889bp|location=Sequence derived from alignment at H-elongata_contig60131:612..2500+ (Himanthalia elongata Himel1 dioecious)
GGGGGGTGGGGTGGTGCATAACGACCACTATGGCATTTGATTGGGAGCTT TTTTGGAACTTGTAATGAAATAAATTCTGGGTACAGTATAACTCGTGGAT TGCTACATGAAGTTTTCTCTTTTAACACCGAAGAGCGAAGAGATGGCCAC AGTATTGATCTTTAATAATCGCCCACGTTGCACGTGTGAGATACGGAAAA CTTCTTTGCAATTCCCCTTGGACCTCGCACCCCAGAACTGTGACCTGAAG CTGTGCGACTTCGGCCTTTCGAGAGGAGTGAGCTCCTCGGAAGAGGAGGA GACTGCCGAGCTCACGGAGTACGTGGTGACGCGCTGGTATCGATCTCCGG AGATCATGCTGGCGGCGGAGTATGGATACCCGATTGACATATGGAGCGTC GGCTGCATCTTTGCCGAGATGCTTCGCAGGGAGCCTCTCTTTCGCGGAGA GACGTACTTGCAGGTCCGGATAGGAGTTGCACGTGGACCAAGGCGTTTTT CCGTGGCCATTGCGGAGGCCATGCGTGGAATTCAGCGTAGATCGACTTAT GAAGAATAAAATATGGTGTTGTGCGAAGCTTTTAAGTAGCCCCTTCTTGC TTGTTTGAAGAGGTTCCGTAAAAAAAGTTAAAACCTTAGACTCATCGTTG ACCCTTTACGCACAAAGCATTTTTTGTTGTTGCCCTCTACTTTTTCCTTC AGCGAGGGGGCGGGGGGGTAACCGGGATTCTTATCTAAGGTATCACGTAG GTTTATGTTTATCTCGCATTGCTGCCCCCCTTGCCATCTGCAACAGATGC TGAAGCTCATCGCAAAGTTTGTGGGAAAGCCAAAGGACCTGTCAGAGCTG TCTTTCGTGACCAACCCCAAAGCGCAGAAGTTCATGGAAGACCTACCTGA GTATCCCCCCGCCGACCTCCGGAGGCGTTTCCCATCGGCGGGAGCTGACG CCGTAGACCTCCTTTCGCGCATGTTGGTCATGCGGCCCGACCGCCGCTTG TCGGTGGATGAAGCGCTTAGGCACCCCTATCTCCGGAGTCTTCGCGACCG CAAGGTTAGCATTACTTTCTTCCGAAACGTAGACGGAGTATGATTTAGGG TGATCATATGTAGAAGTTTTGATTCGTATGAGGCTCAAACAAAAGGAGGG CTCTGCTCGCGCGTTTAAAAAAGATATAGTTGCGTACGCCGCTCAATCAC CCACTCTATGGCTAGATTACCCCCCCCCCCCCCCCCCCGCACGTCACATA CGTTTAGATTCGACGCCACTTCAATGCTCGTGTTCATCAAGTCTGCGTCT CACGCCTGGCAAATCCTTATACTTCCTTCCTCTCTTTCTTTCTTACCCAT GATGAATTGGCCGTGTTCGTTCTGTCGGATCCGGTCGCGCGAAGGCGGAA ACTACAGCGAGCGAACCGGTAGATTTTACTGACGTAGAGCTGGCGCCCCT CAACAAGGACAACCTGCGGCGCCTCATGCACGAAGATGTGCTTGCTTACC GTCCCGAGCTCCGCAGCCCCGCCGCGGGTTCAAGCCTTCCGGAGTCTTCC TCCACGGCGGGGGGGCGCGAGGCCGCGCGGGACGGCCACCACGGTAGCAG GTCATCGTCTTCGTCGTCTTCCATGCCGCCACCACCGCCGAACGGGGTCG GAGGATCGAACGGCGTGATGGCGCCGGGGGAAACGACGCACGTGTCTTCT CGGGTTGCAAACGGAGGGGGTGGACCTTCCAATGCGCACGCCGGGGTCGG GAGCCACAGGGAGCGGCCATCGAGGTCGGACCGTGAGGCGCGGGGTGGGG GCTCCGGGAGGGTGACAGAAAATGGAAATGCTGGAACCTCGTCGTCCTCG AGAAGCGAAGGGCGAACATATGCGGCGTCCAGGGTGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig60131:612..2500+

>mRNA_H-elongata_contig60131.13548.1 ID=mRNA_H-elongata_contig60131.13548.1|Name=mRNA_H-elongata_contig60131.13548.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2220bp|location=Sequence derived from alignment at H-elongata_contig60131:612..2500+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTTTTCTCTTTTAACACCGAAGAGCGAAGAGATGGCCACAGTATT
GATCTTTAATAATCGCCCACGTTGCACGTGTGAGATACGGAAAACTTCTT
TGCAATTCCCCTTGGACCTCGCACCCCAGAACTGTGACCTGAAGCTGTGC
GACTTCGGCCTTTCGAGAGGAGTGAGCTCCTCGGAAGAGGAGGAGACTGC
CGAGCTCACGGAGTACGTGGTGACGCGCTGGTATCGATCTCCGGAGATCA
TGCTGGCGGCGGAGTATGGATACCCGATTGACATATGGAGCGTCGGCTGC
ATCTTTGCCGAGATGCTTCGCAGGGAGCCTCTCTTTCGCGGAGAGACGTA
CTTGCAGATGAAGTTTTCTCTTTTAACACCGAAGAGCGAAGAGATGGCCA
CAGTATTGATCTTTAATAATCGCCCACGTTGCACGTGTGAGATACGGAAA
ACTTCTTTGCAATTCCCCTTGGACCTCGCACCCCAGAACTGTGACCTGAA
GCTGTGCGACTTCGGCCTTTCGAGAGGAGTGAGCTCCTCGGAAGAGGAGG
AGACTGCCGAGCTCACGGAGTACGTGGTGACGCGCTGGTATCGATCTCCG
GAGATCATGCTGGCGGCGGAGTATGGATACCCGATTGACATATGGAGCGT
CGGCTGCATCTTTGCCGAGATGCTTCGCAGGGAGCCTCTCTTTCGCGGAG
AGACGTACTTGCAGATGCTGAAGCTCATCGCAAAGTTTGTGGGAAAGCCA
AAGGACCTGTCAGAGCTGTCTTTCGTGACCAACCCCAAAGCGCAGAAGTT
CATGGAAGACCTACCTGAGTATCCCCCCGCCGACCTCCGGAGGCGTTTCC
CATCGGCGGGAGCTGACGCCGTAGACCTCCTTTCGCGCATGTTGGTCATG
CGGCCCGACCGCCGCTTGTCGGTGGATGAAGCGCTTAGGCACCCCTATCT
CCGGAGTCTTCGCGACCGCAAGATGCTGAAGCTCATCGCAAAGTTTGTGG
GAAAGCCAAAGGACCTGTCAGAGCTGTCTTTCGTGACCAACCCCAAAGCG
CAGAAGTTCATGGAAGACCTACCTGAGTATCCCCCCGCCGACCTCCGGAG
GCGTTTCCCATCGGCGGGAGCTGACGCCGTAGACCTCCTTTCGCGCATGT
TGGTCATGCGGCCCGACCGCCGCTTGTCGGTGGATGAAGCGCTTAGGCAC
CCCTATCTCCGGAGTCTTCGCGACCGCAAGGCGGAAACTACAGCGAGCGA
ACCGGTAGATTTTACTGACGTAGAGCTGGCGCCCCTCAACAAGGACAACC
TGCGGCGCCTCATGCACGAAGATGTGCTTGCTTACCGTCCCGAGCTCCGC
AGCCCCGCCGCGGGTTCAAGCCTTCCGGAGTCTTCCTCCACGGCGGGGGG
GCGCGAGGCCGCGCGGGACGGCCACCACGGTAGCAGGTCATCGTCTTCGT
CGTCTTCCATGCCGCCACCACCGCCGAACGGGGTCGGAGGATCGAACGGC
GTGATGGCGCCGGGGGAAACGACGCACGTGTCTTCTCGGGTTGCAAACGG
AGGGGGTGGACCTTCCAATGCGCACGCCGGGGTCGGGAGCCACAGGGAGC
GGCCATCGAGGTCGGACCGTGAGGCGCGGGGTGGGGGCTCCGGGAGGGTG
ACAGAAAATGGAAATGCTGGAACCTCGTCGTCCTCGAGAAGCGAAGGGCG
AACATATGCGGCGTCCAGGGTGCGCGCGGAAACTACAGCGAGCGAACCGG
TAGATTTTACTGACGTAGAGCTGGCGCCCCTCAACAAGGACAACCTGCGG
CGCCTCATGCACGAAGATGTGCTTGCTTACCGTCCCGAGCTCCGCAGCCC
CGCCGCGGGTTCAAGCCTTCCGGAGTCTTCCTCCACGGCGGGGGGGCGCG
AGGCCGCGCGGGACGGCCACCACGGTAGCAGGTCATCGTCTTCGTCGTCT
TCCATGCCGCCACCACCGCCGAACGGGGTCGGAGGATCGAACGGCGTGAT
GGCGCCGGGGGAAACGACGCACGTGTCTTCTCGGGTTGCAAACGGAGGGG
GTGGACCTTCCAATGCGCACGCCGGGGTCGGGAGCCACAGGGAGCGGCCA
TCGAGGTCGGACCGTGAGGCGCGGGGTGGGGGCTCCGGGAGGGTGACAGA
AAATGGAAATGCTGGAACCTCGTCGTCCTCGAGAAGCGAAGGGCGAACAT
ATGCGGCGTCCAGGGTGCGC
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