mRNA_H-elongata_contig60113.13545.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: D7FU09_ECTSI (Photolyase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU09_ECTSI) HSP 1 Score: 402 bits (1033), Expect = 2.460e-137 Identity = 204/283 (72.08%), Postives = 226/283 (79.86%), Query Frame = 1
Query: 1 GKAMEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEF------------------VAIDSSPPSS-------------SERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
G+AMEQRYLRWQGWLVRYA+GGS D A PTALLVHGFGASSDQWDRVF++F D P S ++ VRL+ALDLVGFGHSAKPPL+FSQYSWADCARDVALRVG G FF+AGNSIGGYISMG+AA+C+ELC+G++L+NSAGRIL E+FQ E T Y GL+VE+ATRGG+LGAYSA PN ALAVLGTGLFAFLQGRIA+ CRNVYPVNP IVDEGLAENILRDSCDPGA+GVIAAGGKLPFSRSANEML KFG
Sbjct: 85 GQAMEQRYLRWQGWLVRYALGGSGDAAAPTALLVHGFGASSDQWDRVFEQFSPSXXXXXXXXXXXXXXXXXADGKLPLSGGVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFFIAGNSIGGYISMGVAADCKELCRGVVLVNSAGRILDDEEFQTEATVKYGGLSVEEATRGGRLGAYSAPPNAALAVLGTGLFAFLQGRIAETCRNVYPVNPGIVDEGLAENILRDSCDPGAVGVIAAGGKLPFSRSANEMLGKFG 367
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A6H5LA65_9PHAE (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA65_9PHAE) HSP 1 Score: 394 bits (1011), Expect = 1.750e-130 Identity = 201/284 (70.77%), Postives = 222/284 (78.17%), Query Frame = 1
Query: 1 GKAMEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEF-------------------VAIDSSPPSSSE-------------RRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
G+AMEQRYLRWQGWLVRYA+GGS D A PTALLVHGFGASSDQWDRVF++F D P S + VRL+ALDLVGFGHSAKPPL+FSQYSWADCARDVALRVG G FF+AGNSIGGYISMG+AA+C+ELC+G++L+NSAGRIL E+FQ E T Y GL+VE+ATR G+L AYSA PN ALAVLG GLFAFLQGRIA+ CRNVYPVNP IVDEGLAENILRDSCDPGA+GVIAAGGKLPFSRSANEML KFG
Sbjct: 351 GQAMEQRYLRWQGWLVRYALGGSGDAAAPTALLVHGFGASSDQWDRVFEQFSPSLSPFSSXXXXXXXXXXXTADGKLPLSDDVGGDLGGDAAAALEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFFIAGNSIGGYISMGVAADCKELCRGVVLVNSAGRILDDEEFQTEATVKYGGLSVEEATRRGRLEAYSAPPNAALAVLGAGLFAFLQGRIAETCRNVYPVNPGIVDEGLAENILRDSCDPGAVGVIAAGGKLPFSRSANEMLGKFG 634
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A7S2UUB3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUB3_9STRA) HSP 1 Score: 270 bits (691), Expect = 8.940e-87 Identity = 134/246 (54.47%), Postives = 170/246 (69.11%), Query Frame = 1
Query: 19 RYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
+Y +W GWL RYA+GG+ D P LLVHGFGAS +QW VF++ + ++ ALDL+GFGHS KPPL FSQY+W D RD A ++ + F VAGNSIGG+ +M +AA+ + C+G++LINSAG+ILT E ++ E+ + G +E+ TR G LG Y A PN L G +F+FLQGRI K C N+YP NPD V GLAE+ILRDSCDPGAIGVIAAGGKLP R ANE+L+KFG
Sbjct: 46 KYWKWNGWLCRYAVGGNADSQAPPLLLVHGFGASVEQWKGVFEQL-----------SQEYQVYALDLIGFGHSQKPPLCFSQYTWQDQVRDFATQIIQKPFVVAGNSIGGFTAMSVAADSSQNCKGLVLINSAGKILTPEQYEEEL-EMQGGRTIEEKTRVGDLGPYRAPPNFVLQAFGFLIFSFLQGRIEKTCMNLYPTNPDPVKNGLAESILRDSCDPGAIGVIAAGGKLPTPRPANELLQKFG 279
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A836C8C6_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C6_9STRA) HSP 1 Score: 250 bits (638), Expect = 1.420e-79 Identity = 130/222 (58.56%), Postives = 160/222 (72.07%), Query Frame = 1
Query: 97 LVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRV--RLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
+VHGFG S+DQW R F+ SE R RL A+DL+GFGHSAKPPLT+SQY+W+DC RD L++ + FFVAGNSIGGY SMG AA+ LCQGI+L+NSAGR+LT D AE K + G+ VE+AT KL YSA PN L+ + T +FA LQGRI + C+++YPV P+ VD GLA+NILRDS DPGA+G+ AG KLP+SRSANEML KFG
Sbjct: 1 MVHGFGGSADQWARCFE------------SELRATHRLFAIDLLGFGHSAKPPLTYSQYTWSDCVRDFGLQIVKTPFFVAGNSIGGYTSMGTAADTPGLCQGIVLLNSAGRLLTPADLIAE-KKKFGGVTVEEATLTQKLAPYSAPPNAVLSAISTVIFAGLQGRIRQTCKSLYPVRPERVDGGLADNILRDSKDPGALGIFNAGAKLPYSRSANEMLAKFG 209
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A0G4GX81_VITBC (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GX81_VITBC) HSP 1 Score: 228 bits (580), Expect = 5.560e-66 Identity = 120/252 (47.62%), Postives = 164/252 (65.08%), Query Frame = 1
Query: 10 MEQRYLRWQGWLVRYAIGGSR-DPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRG--GKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
+E RY W+G+LVRY ++ DPA P LLVHGFGAS+DQW + + ++ + A+D++GFGHS KP LTF+QY+W RD L V RG ++VAGNSIGGY++ LAA+ R+LC+G IL+NSAGR+ T ++ VT + G +E+ATRG L YSA P L + TGL+ +L+ + IC+ +YP N V++G+ + ILRDS DPGAIGVIA+G KLP RS NE++ KFG
Sbjct: 436 LETRYYHWRGFLVRYIKSATQHDPAKPKVLLVHGFGASADQWRKTM-----------AVLQQHYEVFAIDMLGFGHSEKPRLTFTQYTWESLLRDFVLEVVRGPYYVAGNSIGGYMAQSLAADTRDLCRGTILLNSAGRVFTPAEY-VNVTASLGG-TMEEATRGYAQPLPPYSAPPERLLQLFATGLYLYLKTQTPSICKRLYPTNGTAVEDGIIDCILRDSADPGAIGVIASGAKLPPQRSHNELIAKFG 674
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: I2CPL0_NANGC (Alpha beta hydrolase fold protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPL0_NANGC) HSP 1 Score: 213 bits (542), Expect = 5.920e-65 Identity = 115/242 (47.52%), Postives = 153/242 (63.22%), Query Frame = 1
Query: 55 AIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAI-DSSPP-------SSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
A GG D PT LLVHGFGAS+DQW + F E + D + P + R VR+ ALDL+GFGHS KP +T++QY W D RD AL V + FF+AGNSIGG+ + +AA+ LCQG+ILIN+AG++ + E + AE+ G VE+ TR L +S P L GLF +LQ R+ +IC+++Y +P V L NI+RDSCDPGA+GV A+GG+LP RS NE++ KFG
Sbjct: 1 AEGGGEDM--PTLLLVHGFGASADQWSKCFLELRRMGDPAHPHFDPAFHARFPRGVRVFALDLLGFGHSEKPSVTYTQYLWQDQVRDFALEVLQSPFFIAGNSIGGFTAASVAADIGPLCQGLILINTAGKVTSPEAYAAELASRA-GRTVEETTRSASLPPFSGPPKAVLTAFSAGLFWYLQPRVEQICKDLYRHSPQEVGPRLVNNIVRDSCDPGALGVFASGGRLPSPRSTNELMAKFG 239
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A4D9CZF8_9STRA (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZF8_9STRA) HSP 1 Score: 218 bits (554), Expect = 1.190e-61 Identity = 125/280 (44.64%), Postives = 168/280 (60.00%), Query Frame = 1
Query: 13 EQRYLRWQGWLVRYAI------------GGS------RDPAD------PTALLVHGFGASSDQWDRVFDEFVAI-DSSPP-------SSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
E +Y R+ G VRYA+ GGS + PA+ PT LLVHGFGAS+DQW + F E + D + P + R VR+ ALDL+GFGHS KP +T++QY W D RD AL V + FF+AGNSIGG+ + +AA+ LCQG+ILIN+AG++ + E + AE+T G VE+ TR L +S P L GLF +LQ R+ +IC+++Y +P V L NI+RDSCDPGA+GV A+GG+LP RS NE++ KFG
Sbjct: 561 EFKYWRFHGHNVRYAVSKPHMASGKSGSGGSGPEDQGQVPAEGGGEDVPTLLLVHGFGASADQWSKCFLELRRMGDPAHPHFDPAFHARFPRGVRVFALDLLGFGHSEKPSVTYTQYLWQDQVRDFALEVLQSPFFIAGNSIGGFTAASVAADIGPLCQGLILINTAGKVTSPEAYAAELTSRA-GRTVEETTRSASLPPFSGPPKAVLTAFSAGLFWYLQPRVEQICKDLYRHSPQEVGPRLVNNIVRDSCDPGALGVFASGGRLPSPRSTNELMAKFG 839
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A7S1IML3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IML3_9EUGL) HSP 1 Score: 208 bits (529), Expect = 4.220e-59 Identity = 111/250 (44.40%), Postives = 153/250 (61.20%), Query Frame = 1
Query: 10 MEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAEC-RELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
M+ RY R G+L RYA+GG + P +LVHGFGAS+DQW F E S+ V + A+DL+GFGH KP ++++QY W D + A V R FVAGNSIGGY ++ A + +G++L+NSAGR++T E+++ E+ + + G++G Y LPN LA G LFA+LQ I IC+NVYP NPD VD+ L NI RDS DPGA+GV+ +G KLP R+ NE+ E++G
Sbjct: 403 MQFRYWRHNGFLSRYAVGGEQS-GGPAIILVHGFGASADQWHHQFAEL----------SKDHV-VYAIDLLGFGHGEKPAISYTQYFWEDQVKAFAAEVVRRPHFVAGNSIGGYTALSAATGLGKAYAKGVVLLNSAGRMITQEEYERELAENGGTVKQRMMGEAGEIGMYKPLPNWLLATGGKALFAYLQPSIGSICKNVYPNNPDAVDDRLTSNIFRDSEDPGALGVMTSGAKLPPPRTKNELFEEYG 640
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A7S1EEH2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EEH2_HEMAN) HSP 1 Score: 190 bits (482), Expect = 2.430e-54 Identity = 105/250 (42.00%), Postives = 145/250 (58.00%), Query Frame = 1
Query: 7 AMEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
A +Y +WQG +VRYA GG+ P L VHGFGAS+DQW + E + ++ A+DL+GFGHSAKP +T+SQY W D RD AL V +++GNSIGGY +M A++ + C+G+IL NSAGRI+ AE F AE + G V+ R A + P AL G + A L+ + C+ VYP +P+ V L ++I+RDS DPG ++AAG KLP + NE+L +FG
Sbjct: 137 AFAYKYFKWQGHMVRYAEGGNEQ--GPAVLFVHGFGASADQWHKCIKELGSTH-----------KVYAIDLLGFGHSAKPIVTYSQYLWEDVVRDFALEVVSRPLYLSGNSIGGYTAMSAASQLKGFCRGLILCNSAGRIVDAETFAAEERER--GGTVKATLRREGAPAKESPPQWALNWAGRAIIAGLRPNVESFCKKVYPNSPEQVTPRLVDSIVRDSKDPGGFSILAAGFKLPPQATKNELLREFG 371
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A0G4HSB7_9ALVE (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HSB7_9ALVE) HSP 1 Score: 185 bits (469), Expect = 5.310e-50 Identity = 108/261 (41.38%), Postives = 147/261 (56.32%), Query Frame = 1
Query: 1 GKAMEQRYLRWQGWLVRY-----AIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATR-----GGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKF 753
G +E Y RWQG LVRY + + P P +LVHGFGAS +Q+ ++ P + + ALDL+GFGH+ KP LT+SQY W R L + G +AGNSIGGY+SMG A+ +G++L+NSAGR++ + F+ E + G +VE ATR G +G + P L G LF +L KI ++VYPV P+ + GL + ILRD+ DPGAIGVIA+G KLP R NE+L +F
Sbjct: 510 GDGIEYSYYRWQGNLVRYCRCPPSNQKAGSPKRPKIVLVHGFGASCEQYSKLM----------PLLAAEGFEVFALDLLGFGHAEKPRLTYSQYLWEGQIRHFVLSLVGGDAVLAGNSIGGYLSMGAGADLGGASRGVVLLNSAGRVIESGAFEEEERER--GCSVETATREYKQRGDSIGPFKPFPERLLRAFGAALFVYLSTSTEKIVKSVYPVFPEEAEGGLVDAILRDAGDPGAIGVIASGRKLPPQRCQNELLRRF 758 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60113.13545.1 >prot_H-elongata_contig60113.13545.1 ID=prot_H-elongata_contig60113.13545.1|Name=mRNA_H-elongata_contig60113.13545.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp MEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAback to top mRNA from alignment at H-elongata_contig60113:248..3095- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60113.13545.1 ID=mRNA_H-elongata_contig60113.13545.1|Name=mRNA_H-elongata_contig60113.13545.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2848bp|location=Sequence derived from alignment at H-elongata_contig60113:248..3095- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60113:248..3095- >mRNA_H-elongata_contig60113.13545.1 ID=mRNA_H-elongata_contig60113.13545.1|Name=mRNA_H-elongata_contig60113.13545.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig60113:248..3095- (Himanthalia elongata Himel1 dioecious)back to top |