mRNA_H-elongata_contig60072.13543.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60072.13543.1
Unique NamemRNA_H-elongata_contig60072.13543.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60072.13543.1 vs. uniprot
Match: A0A6H5K6U1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6U1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 6.920e-6
Identity = 35/67 (52.24%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    7 ELKAQRKAAAAVGLKAGEVIETVTMGAIGGTGSGTGGSGAGMDTALMPPSMKWRKLSPSEILEAAKK 207
            +LK QRKAAAA GLK GEVIE  T        +G GG G   + A  P +  WRKL+P+EIL+AA K
Sbjct:   72 QLKEQRKAAAAAGLKPGEVIEAATA-------AGAGGDGIRGENA--PWNGSWRKLTPAEILQAAGK 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60072.13543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6U1_9PHAE6.920e-652.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60072contigH-elongata_contig60072:740..1060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.1620727-CDS-H-elongata_contig60072:739..10601622930974.1620727-CDS-H-elongata_contig60072:739..1060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60072 740..1060 +
1691679647.0982635-CDS-H-elongata_contig60072:739..10601691679647.0982635-CDS-H-elongata_contig60072:739..1060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60072 740..1060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60072.13543.1prot_H-elongata_contig60072.13543.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60072 740..1060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60072.13543.1

>prot_H-elongata_contig60072.13543.1 ID=prot_H-elongata_contig60072.13543.1|Name=mRNA_H-elongata_contig60072.13543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MRELKAQRKAAAAVGLKAGEVIETVTMGAIGGTGSGTGGSGAGMDTALMP
PSMKWRKLSPSEILEAAKKGPITNVVAKPPNDERYTVASGARDAANIKCG
DRTAGMS
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mRNA from alignment at H-elongata_contig60072:740..1060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60072.13543.1 ID=mRNA_H-elongata_contig60072.13543.1|Name=mRNA_H-elongata_contig60072.13543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig60072:740..1060+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGAGTTGAAGGCGCAGCGGAAGGCGGCTGCGGCGGTGGGTCTAAA
GGCGGGAGAAGTGATCGAAACCGTAACCATGGGTGCTATAGGCGGAACGG
GCTCGGGCACAGGCGGTAGTGGTGCCGGGATGGACACCGCGTTAATGCCC
CCCAGCATGAAATGGCGTAAGCTCTCCCCGTCAGAGATCTTGGAGGCGGC
TAAGAAGGGCCCGATCACGAACGTTGTTGCCAAGCCGCCCAATGATGAAA
GATATACAGTAGCATCGGGAGCACGAGACGCGGCCAACATAAAATGCGGG
GATAGAACCGCTGGTATGTCT
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Coding sequence (CDS) from alignment at H-elongata_contig60072:740..1060+

>mRNA_H-elongata_contig60072.13543.1 ID=mRNA_H-elongata_contig60072.13543.1|Name=mRNA_H-elongata_contig60072.13543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig60072:740..1060+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGAGTTGAAGGCGCAGCGGAAGGCGGCTGCGGCGGTGGGTCTAAA
GGCGGGAGAAGTGATCGAAACCGTAACCATGGGTGCTATAGGCGGAACGG
GCTCGGGCACAGGCGGTAGTGGTGCCGGGATGGACACCGCGTTAATGCCC
CCCAGCATGAAATGGCGTAAGCTCTCCCCGTCAGAGATCTTGGAGGCGGC
TAAGAAGGGCCCGATCACGAACGTTGTTGCCAAGCCGCCCAATGATGAAA
GATATACAGTAGCATCGGGAGCACGAGACGCGGCCAACATAAAATGCGGG
GATAGAACCGCTGGTATGTCTATGAGGGAGTTGAAGGCGCAGCGGAAGGC
GGCTGCGGCGGTGGGTCTAAAGGCGGGAGAAGTGATCGAAACCGTAACCA
TGGGTGCTATAGGCGGAACGGGCTCGGGCACAGGCGGTAGTGGTGCCGGG
ATGGACACCGCGTTAATGCCCCCCAGCATGAAATGGCGTAAGCTCTCCCC
GTCAGAGATCTTGGAGGCGGCTAAGAAGGGCCCGATCACGAACGTTGTTG
CCAAGCCGCCCAATGATGAAAGATATACAGTAGCATCGGGAGCACGAGAC
GCGGCCAACATAAAATGCGGGGATAGAACCGCTGGTATGTCT
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