mRNA_H-elongata_contig6007.13541.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6007.13541.1
Unique NamemRNA_H-elongata_contig6007.13541.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6007.13541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6007contigH-elongata_contig6007:2232..5021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2495
Cds size1590
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6007.13541.1prot_H-elongata_contig6007.13541.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6007 2410..4294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.9911745-UTR-H-elongata_contig6007:2231..24091622930973.9911745-UTR-H-elongata_contig6007:2231..2409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6007 2232..2409 +
1691679647.040378-UTR-H-elongata_contig6007:2231..24091691679647.040378-UTR-H-elongata_contig6007:2231..2409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6007 2232..2409 +
1622930974.0523021-UTR-H-elongata_contig6007:4294..50211622930974.0523021-UTR-H-elongata_contig6007:4294..5021Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6007 4295..5021 +
1691679647.0741408-UTR-H-elongata_contig6007:4294..50211691679647.0741408-UTR-H-elongata_contig6007:4294..5021Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6007 4295..5021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.013123-CDS-H-elongata_contig6007:2409..39131622930974.013123-CDS-H-elongata_contig6007:2409..3913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6007 2410..3913 +
1691679647.0499535-CDS-H-elongata_contig6007:2409..39131691679647.0499535-CDS-H-elongata_contig6007:2409..3913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6007 2410..3913 +
1622930974.0323322-CDS-H-elongata_contig6007:4208..42941622930974.0323322-CDS-H-elongata_contig6007:4208..4294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6007 4209..4294 +
1691679647.0641446-CDS-H-elongata_contig6007:4208..42941691679647.0641446-CDS-H-elongata_contig6007:4208..4294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6007 4209..4294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6007.13541.1

>prot_H-elongata_contig6007.13541.1 ID=prot_H-elongata_contig6007.13541.1|Name=mRNA_H-elongata_contig6007.13541.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=530bp
MAGRYCMYRCCIELPSFGVAGTKTAKYCRQHAMDGMVNVRSMRCLHSECD
KIPTFGVSGTKKAEYCRQHTMDGMVNVRSMRCLQNKCVKAPSFGMAGTKT
GKYCKQHAMDGMVNVKSKRCLHSECAKAPVFGVAGTKNMEYCRQHAMNGM
VNVSYKTCTHEGCTTRSNFGMVGTKTKEYCAQHAPHGMVNVFITNCTTAG
CGEQALFGLTGTRKATYCSGHKIDGMVNVRSMTCLHNRCVKVPVFGVAGT
KTAEYCKQHAMDGIVNVKLNRCLHSECAKVPMFGVIGTKTAKYCRQHAMD
GMVDVRNKICIHQFCTNRAYFGLAGARKVEYCKQHAPDRTANVPNRSCDN
ENCETQLSYGETGTRTAKYCSRHTPGGMVNVRSDEWANEGYTKPSSGVNT
FKKREIGPPYSEEENIVNASPVGVKRKSVNPCSSHESASSGGSEGFRTRA
RKLPVASAASSVAIARESAAAAMTMPATDGQISSVAQDPSVKTELRLFLK
SDTPKMVIGQGNGVVSDKGAARSAVRASL*
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mRNA from alignment at H-elongata_contig6007:2232..5021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6007.13541.1 ID=mRNA_H-elongata_contig6007.13541.1|Name=mRNA_H-elongata_contig6007.13541.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2790bp|location=Sequence derived from alignment at H-elongata_contig6007:2232..5021+ (Himanthalia elongata Himel1 dioecious)
CTTTTCAACACCCCCCCCCAAAATAGTTAAGGTTCTTCTGAGGGTGAAGC
TGTCCAGTTCGAGGATTTTCCAGCGGAAGGCATTTGGAGCTTCGAGTGGA
GCTGAGCAGAGAGAGAACACGGGTTCCGGGCGGTGTTGACACTACAACGA
CGACTCCATATACCACGTGATACCCCTCATGGCTGGAAGGTATTGCATGT
ATCGATGTTGCATCGAGCTCCCGTCATTCGGCGTTGCCGGCACAAAAACG
GCAAAGTACTGCCGACAGCACGCCATGGACGGGATGGTCAATGTTCGATC
GATGAGATGTCTCCATAGCGAATGCGACAAGATCCCGACGTTCGGTGTGT
CCGGCACAAAAAAGGCTGAGTACTGCAGACAGCACACCATGGACGGGATG
GTCAACGTCCGATCGATGAGATGTCTCCAAAATAAATGCGTCAAGGCACC
GTCGTTCGGCATGGCCGGCACAAAAACGGGAAAATACTGCAAACAGCACG
CCATGGACGGGATGGTCAACGTCAAATCGAAGAGATGTCTCCATAGCGAA
TGTGCCAAGGCCCCGGTGTTCGGCGTGGCCGGCACAAAAAATATGGAATA
TTGCAGGCAGCACGCCATGAACGGGATGGTCAACGTCAGTTATAAGACCT
GTACCCACGAAGGCTGCACCACACGCTCGAATTTTGGGATGGTCGGCACC
AAAACGAAGGAATACTGCGCACAGCACGCTCCCCACGGAATGGTCAACGT
CTTCATCACAAATTGTACAACCGCGGGATGCGGCGAGCAGGCGTTGTTTG
GATTGACCGGTACAAGAAAGGCAACGTACTGTTCAGGGCACAAAATAGAC
GGGATGGTCAACGTCCGATCGATGACATGTCTCCATAACAGATGTGTCAA
GGTCCCGGTGTTCGGCGTGGCCGGCACAAAAACAGCGGAGTACTGCAAAC
AGCACGCCATGGACGGGATAGTCAACGTTAAATTGAATAGATGTCTCCAT
AGCGAATGTGCCAAGGTCCCGATGTTCGGTGTGATCGGCACAAAAACGGC
GAAGTACTGCCGACAGCATGCCATGGACGGGATGGTCGACGTCCGTAACA
AAATATGCATCCACCAATTCTGCACCAATCGGGCATATTTCGGCTTGGCC
GGTGCCAGAAAGGTCGAATACTGCAAGCAGCACGCCCCTGATAGGACGGC
CAATGTTCCTAACAGGAGCTGTGACAACGAAAACTGTGAAACGCAGTTGT
CGTACGGAGAGACCGGCACCCGAACGGCGAAGTATTGCTCACGGCACACC
CCGGGCGGGATGGTGAACGTCCGCAGTGATGAATGGGCCAACGAAGGCTA
CACCAAGCCAAGTTCCGGTGTTAATACATTCAAAAAGCGAGAGATTGGCC
CACCCTATTCCGAGGAGGAAAATATTGTGAACGCGAGCCCAGTAGGCGTA
AAACGGAAAAGCGTTAATCCTTGTTCCTCTCATGAAAGCGCTTCTTCGGG
CGGTAGCGAGGGTTTTCGAACGCGAGCACGGAAGCTACCCGTTGCGTCTG
CGGCTTCGTCGGTAGCCATTGCCCGAGAATCAGCCGCAGCAGCGATGACT
ATGCCGGCGACCGACGGACAAATATCTTCCGTCGCGCAAGATCCATCTGT
GAAGACGGAGTTGCGGCTCTTCTTGAAGTCAGGTACACTACGGCCGACCG
CAACCCTGTCGGTTTGTCACTAAGATCTTGCGAAAGTATCCGTTATTTGT
TATATTCCCCTAACTGACGTCCATCCGATCGGGCATTCCTTGTAGCCTGT
CGCGCTCGGTCAGAAGATACATCGCATTCTCTTTCCGAACTATTATTATC
ATCATTGTATTTCGTTGATGTGTGTCGAGCTCCACCCTTCCTTTTCTAAG
GCCTCGGAGTGTAGCTATTATCTAACAAAGCACGCCACTCGCACTTATGT
CGTCATTCTCCCTTATTTTGAACTCAGACACGCCGAAAATGGTCATCGGT
CAAGGGAACGGGGTCGTTAGCGATAAAGGCGCCGCTCGATCTGCGGTTAG
GGCGTCATTATAGGCAAGAAATATTATGTCACGCCTGTCTCCTCAACGAC
TTAGAGCAGTTACGGTTGTATCATAGCGTAGATATATTTTTGTCTTTCGT
GCTTAGGTGTTCTTTTTTCGGACCAGGGGTTTGCATTGTTTCACCGTTGA
TGTGTGCCGATAGAAGTCGTGGTGTGGTAACATGGAACCAAGCGAGGGGT
GGCACCGGACCTCCTGAGGACGATGTTGGTAACGAAGGACTATTGCGGGT
AGGACCTATTTCATCTATCTGGAACGTCCTTGACTTTTTTACATAAATAA
TGTCAGTATACTTCATCCACTAACCACGTTAGGTCGAAAAACGGCTCTGA
ATTGAAAAAGAAATGATTTAATCCTCCTATTTGTTTTTGTAAAAATATCC
CGGCGTCGAAACTAAATCCATTGAACTATGAAGTCATAAAGTCGAAGTCC
TGGGGAGGCGGTAGAAATATACCGAGTTCAATATCGCATGAGAGTGATGT
ACAATAATTGCCTTCGATAATGTACGTACTGTATCGCATGTGTCCACTGT
ACCAGTAGTGGGCGTTGAAAAAGAAAGGAGGCACACAAAAAAAAATGGCA
GCACCCGTTACCGTTACTCAAGCTACCTTGAGGGCTAAAGACCAGCGCCT
GCGGGCTCTTGGTGGCGAACGCCATCGGTACGCAATTGCGTGACCTGATA
ACCCCGGGATTGGCCCGATGGTGGTACACGGTGGTGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig6007:2232..5021+

>mRNA_H-elongata_contig6007.13541.1 ID=mRNA_H-elongata_contig6007.13541.1|Name=mRNA_H-elongata_contig6007.13541.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3180bp|location=Sequence derived from alignment at H-elongata_contig6007:2232..5021+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGGAAGGTATTGCATGTATCGATGTTGCATCGAGCTCCCGTCATT
CGGCGTTGCCGGCACAAAAACGGCAAAGTACTGCCGACAGCACGCCATGG
ACGGGATGGTCAATGTTCGATCGATGAGATGTCTCCATAGCGAATGCGAC
AAGATCCCGACGTTCGGTGTGTCCGGCACAAAAAAGGCTGAGTACTGCAG
ACAGCACACCATGGACGGGATGGTCAACGTCCGATCGATGAGATGTCTCC
AAAATAAATGCGTCAAGGCACCGTCGTTCGGCATGGCCGGCACAAAAACG
GGAAAATACTGCAAACAGCACGCCATGGACGGGATGGTCAACGTCAAATC
GAAGAGATGTCTCCATAGCGAATGTGCCAAGGCCCCGGTGTTCGGCGTGG
CCGGCACAAAAAATATGGAATATTGCAGGCAGCACGCCATGAACGGGATG
GTCAACGTCAGTTATAAGACCTGTACCCACGAAGGCTGCACCACACGCTC
GAATTTTGGGATGGTCGGCACCAAAACGAAGGAATACTGCGCACAGCACG
CTCCCCACGGAATGGTCAACGTCTTCATCACAAATTGTACAACCGCGGGA
TGCGGCGAGCAGGCGTTGTTTGGATTGACCGGTACAAGAAAGGCAACGTA
CTGTTCAGGGCACAAAATAGACGGGATGGTCAACGTCCGATCGATGACAT
GTCTCCATAACAGATGTGTCAAGGTCCCGGTGTTCGGCGTGGCCGGCACA
AAAACAGCGGAGTACTGCAAACAGCACGCCATGGACGGGATAGTCAACGT
TAAATTGAATAGATGTCTCCATAGCGAATGTGCCAAGGTCCCGATGTTCG
GTGTGATCGGCACAAAAACGGCGAAGTACTGCCGACAGCATGCCATGGAC
GGGATGGTCGACGTCCGTAACAAAATATGCATCCACCAATTCTGCACCAA
TCGGGCATATTTCGGCTTGGCCGGTGCCAGAAAGGTCGAATACTGCAAGC
AGCACGCCCCTGATAGGACGGCCAATGTTCCTAACAGGAGCTGTGACAAC
GAAAACTGTGAAACGCAGTTGTCGTACGGAGAGACCGGCACCCGAACGGC
GAAGTATTGCTCACGGCACACCCCGGGCGGGATGGTGAACGTCCGCAGTG
ATGAATGGGCCAACGAAGGCTACACCAAGCCAAGTTCCGGTGTTAATACA
TTCAAAAAGCGAGAGATTGGCCCACCCTATTCCGAGGAGGAAAATATTGT
GAACGCGAGCCCAGTAGGCGTAAAACGGAAAAGCGTTAATCCTTGTTCCT
CTCATGAAAGCGCTTCTTCGGGCGGTAGCGAGGGTTTTCGAACGCGAGCA
CGGAAGCTACCCGTTGCGTCTGCGGCTTCGTCGGTAGCCATTGCCCGAGA
ATCAGCCGCAGCAGCGATGACTATGCCGGCGACCGACGGACAAATATCTT
CCGTCGCGCAAGATCCATCTGTGAAGACGGAGTTGCGGCTCTTCTTGAAG
TCAGATGGCTGGAAGGTATTGCATGTATCGATGTTGCATCGAGCTCCCGT
CATTCGGCGTTGCCGGCACAAAAACGGCAAAGTACTGCCGACAGCACGCC
ATGGACGGGATGGTCAATGTTCGATCGATGAGATGTCTCCATAGCGAATG
CGACAAGATCCCGACGTTCGGTGTGTCCGGCACAAAAAAGGCTGAGTACT
GCAGACAGCACACCATGGACGGGATGGTCAACGTCCGATCGATGAGATGT
CTCCAAAATAAATGCGTCAAGGCACCGTCGTTCGGCATGGCCGGCACAAA
AACGGGAAAATACTGCAAACAGCACGCCATGGACGGGATGGTCAACGTCA
AATCGAAGAGATGTCTCCATAGCGAATGTGCCAAGGCCCCGGTGTTCGGC
GTGGCCGGCACAAAAAATATGGAATATTGCAGGCAGCACGCCATGAACGG
GATGGTCAACGTCAGTTATAAGACCTGTACCCACGAAGGCTGCACCACAC
GCTCGAATTTTGGGATGGTCGGCACCAAAACGAAGGAATACTGCGCACAG
CACGCTCCCCACGGAATGGTCAACGTCTTCATCACAAATTGTACAACCGC
GGGATGCGGCGAGCAGGCGTTGTTTGGATTGACCGGTACAAGAAAGGCAA
CGTACTGTTCAGGGCACAAAATAGACGGGATGGTCAACGTCCGATCGATG
ACATGTCTCCATAACAGATGTGTCAAGGTCCCGGTGTTCGGCGTGGCCGG
CACAAAAACAGCGGAGTACTGCAAACAGCACGCCATGGACGGGATAGTCA
ACGTTAAATTGAATAGATGTCTCCATAGCGAATGTGCCAAGGTCCCGATG
TTCGGTGTGATCGGCACAAAAACGGCGAAGTACTGCCGACAGCATGCCAT
GGACGGGATGGTCGACGTCCGTAACAAAATATGCATCCACCAATTCTGCA
CCAATCGGGCATATTTCGGCTTGGCCGGTGCCAGAAAGGTCGAATACTGC
AAGCAGCACGCCCCTGATAGGACGGCCAATGTTCCTAACAGGAGCTGTGA
CAACGAAAACTGTGAAACGCAGTTGTCGTACGGAGAGACCGGCACCCGAA
CGGCGAAGTATTGCTCACGGCACACCCCGGGCGGGATGGTGAACGTCCGC
AGTGATGAATGGGCCAACGAAGGCTACACCAAGCCAAGTTCCGGTGTTAA
TACATTCAAAAAGCGAGAGATTGGCCCACCCTATTCCGAGGAGGAAAATA
TTGTGAACGCGAGCCCAGTAGGCGTAAAACGGAAAAGCGTTAATCCTTGT
TCCTCTCATGAAAGCGCTTCTTCGGGCGGTAGCGAGGGTTTTCGAACGCG
AGCACGGAAGCTACCCGTTGCGTCTGCGGCTTCGTCGGTAGCCATTGCCC
GAGAATCAGCCGCAGCAGCGATGACTATGCCGGCGACCGACGGACAAATA
TCTTCCGTCGCGCAAGATCCATCTGTGAAGACGGAGTTGCGGCTCTTCTT
GAAGTCAGACACGCCGAAAATGGTCATCGGTCAAGGGAACGGGGTCGTTA
GCGATAAAGGCGCCGCTCGATCTGCGGTTAGGGCGTCATTATAGACACGC
CGAAAATGGTCATCGGTCAAGGGAACGGGGTCGTTAGCGATAAAGGCGCC
GCTCGATCTGCGGTTAGGGCGTCATTATAG
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