mRNA_H-elongata_contig60047.13539.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A6H5JKS6_9PHAE (GT4 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKS6_9PHAE) HSP 1 Score: 463 bits (1192), Expect = 2.590e-158 Identity = 219/311 (70.42%), Postives = 261/311 (83.92%), Query Frame = 2
Query: 2 TEFMRRKISREGWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEA-----LPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTREFRDDQLKKRGWPLWEIFGLLLFYIFEGIKMIAALIALVTEGSDSEVVRLSIKAFRQHLTLLGALL 919
TEFMRRK+ EGW+T+LGVWGRGVDPDLFSPARR Q LRRQLGLGP+D+AALWLGRVV EK+P VWLRAV +VQREA+ERYDAAVAA ++ LPPRVVG+CVG GEAM ++G +GV C+GWKAGEELARV+ASCD+MVAPSEIETFGRVTLEAMSCGL CVVNRECGDHLV+D NGFCVP G++DGYV GLR+LV++K+ R+KMSA GRQMA+GY TT++Y+GM+++YR+C + Q + FR KKRG+P WE FGLL++Y+FE KM+ A A TEG DSEVVRLS++AFR HL LLG LL
Sbjct: 180 TEFMRRKVQAEGWDTELGVWGRGVDPDLFSPARRCQDLRRQLGLGPDDVAALWLGRVVQEKKPGVWLRAVQQVQREAKERYDAAVAAAAQRDSDSKVPLPPRVVGICVGEGEAMRTLRGVDGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDHLVQDGSNGFCVPSGDQDGYVEGLRKLVQDKDLRNKMSATGRQMALGYGTTQLYDGMMDIYRSCRETQNKTFRARVAKKRGFPFWEAFGLLIYYVFEAAKMMTAAAAFFTEGRDSEVVRLSVRAFRSHLALLGQLL 490
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7S2UTT6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTT6_9STRA) HSP 1 Score: 166 bits (421), Expect = 8.820e-44 Identity = 86/251 (34.26%), Postives = 140/251 (55.78%), Query Frame = 2
Query: 2 TEFMRRKISREGWE--TQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTRE-FRDDQLK 745
T F+R K+ EG++ T++ +WGRGVD +F+P+RRSQ R + G+G ++ LW+GR+V EK+P +W+ ++ +E +P + G+ VG G M+ E V GW +GEEL AS D ++ PS++ETFG VTLEA++ G+ CVV + C HLV++ NGF P G+ + + T +R++ + + R A Y +++ + MLE Y+ C ++ E R +Q +
Sbjct: 208 TPFIRSKLENEGFDQITRMKIWGRGVDMQIFNPSRRSQEFRSRYGIGAEEVVLLWVGRLVQEKRPEIWVDVARRLT----------------QEGVPFK--GLVVGKGSFQTEMEALENVRVAGWLSGEELGVAYASADCLLFPSDVETFGNVTLEALASGVPCVVEQGCSGHLVENGKNGFTAPSGDVEKFYTATKRIIMDAQLRKSFRPKCVAKAKEYERSKILQRMLEHYKDCHQRHDPEGLRQEQAR 440
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7S2S5M5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5M5_9STRA) HSP 1 Score: 162 bits (409), Expect = 6.890e-42 Identity = 94/254 (37.01%), Postives = 132/254 (51.97%), Query Frame = 2
Query: 2 TEFMRRKISREGWE--TQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDG------------YVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTR 721
T+FMR K+++EG++ T + +WGRGVD + FSPARRS RR++G +DI +W+GR+V EK+P VW + K+ E + G VG G G + LGW +G ELA AS D+++ PS++ETFG VTLEA+ CG+ VV C HLV D V GF V G D Y T +R+LV + + R+K + R A YS + V + M++ Y Q R
Sbjct: 232 TDFMRLKLTKEGYDQFTDMQIWGRGVDLERFSPARRSTAFRRRIGAKDSDIVLIWVGRLVPEKRPDVWRDVLKKLHDEGH------------------AIRGAVVGVGPCQTYFDGIPYIQTLGWMSGVELAEAYASADILLFPSDVETFGNVTLEALGCGIPAVVEENCSRHLVSDGVEGFAVHQGIDDPNDRSQYEACLNRYFTKVRQLVVDPDLRAKCARNARVKADTYSNSMVQQRMIDNYHHALNTQVR 467
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7S3HC69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC69_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.670e-41 Identity = 91/246 (36.99%), Postives = 132/246 (53.66%), Query Frame = 2
Query: 2 TEFMRRKISRE---GWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTC-DKQQTREF 727
T +M RK+ E G T+L +WGRGVD ++FSP RRSQ R G+ DI LW+ R+V EK+P +W+ V ++Q +E LP V + VG+G + + T GW +G L AS D+++ PS++ETFG VTLEA+S G VV ++CG+HLV +NG CG+ +G+ RRLV + R KM+ A R+ A + + + M E Y+ DK + F
Sbjct: 208 TTYMLRKMREEWGYGKATELKLWGRGVDMNIFSPERRSQAFRASKGISETDIVILWVSRLVPEKRPDIWMGVVKRLQ----------------DEGLP--VKALVVGSGTFEKYLTTLKDATICGWLSGTSLGEAYASSDILLFPSDVETFGNVTLEALSSGCPAVVEKKCGEHLVDHGINGLTCQCGDAEGFYQATRRLVLDATLRKKMAVAARESAWKFERNIILQQMAENYKDAIDKHRDPAF 435
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7S1TND5_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TND5_9STRA) HSP 1 Score: 142 bits (358), Expect = 5.660e-34 Identity = 105/322 (32.61%), Postives = 152/322 (47.20%), Query Frame = 2
Query: 2 TEFMRRKISREGW--ETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDG---YVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTREFRDDQ-----------LKKRGWPLWEIFGLLLFYIFEGIKMIAALIALVTEGSDSEVVRLSIKAFRQHLTLLGALL 919
T F+R K+ R+G T L +WGRGVD LF PA RSQ R + G G +D+ LW+GR+V EK+P V+LR V ++ RE G+ VGTG + + + G+ +G LA AS D+++ PS +ETFG VTLEA++ G VV+ C HLV+ VNG V G+ D Y RRLV RS ++A R S V ML+ Y K + + + +R + LW I ++ + I +A ++L E S + V+ + KA + T L +L
Sbjct: 365 TPFIRSKLLRDGIGEATTLKIWGRGVDFGLFHPALRSQRFRERYGFGADDVVVLWVGRLVKEKRPDVFLRVVERLNREGF------------------ACKGLVVGTGVYEQPLSLSPHIVTAGFLSGTSLATAYASSDLLLFPSTVETFGNVTLEALAAGCPVVVDANCSGHLVQGGVNGEAVESGDADAAEAYYDATRRLVSNHAYRSGCASASRASVAHCSAEAVQGQMLQNYLEMAKAKGESAPESMAACHATADSRIVSERFYSLWRIAFFFVYPVMSLITGVANALSLC-ECSPCKAVKRNPKAGSRGTTELRIIL 667
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: W7U5T4_9STRA (Glycosyl group 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5T4_9STRA) HSP 1 Score: 137 bits (344), Expect = 2.020e-32 Identity = 84/280 (30.00%), Postives = 139/280 (49.64%), Query Frame = 2
Query: 2 TEFMRRKISREGW-ETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEV-------YEGMLEVYRTCDKQQTREFRDDQLKKRGWPLWEIFGLLLFYIFEGIKMI 817
T F+R+++ G+ E ++ +WGRGVD +F+P RS RR G+ +++ LW+GR+V EK P +W + ++ D+E L R + VG+G M+ LGW +G LA V AS D+ + PSE+ETFG VTLEA++ G+ C+ + C HLV VNGF + + D Y + R LV R++ + R + V YEG+++ Y + ++ GW +++ +L+++ F + M+
Sbjct: 235 TPFVRKRLVDSGFPENRVSLWGRGVDLKMFNPNFRSMAFRRGRGIADDEVVILWVGRLVKEKSPDIWAEVIRRL----------------DQEGLKFRAL--VVGSGSYEEHMKQLPRTEHLGWMSGAALAEVYASVDLFLFPSEVETFGNVTLEALASGVPCIASAGCSGHLVHHGVNGFVISRADVDEYHSLTRELVVNGPLRARFAEKARGSIVSLEHDRVMDMMVANYEGVVQAYHRPGGEGCNS------RRGGWG--DVYIMLVYHFFSFLMML 488
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A4D9DCA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCA1_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.570e-32 Identity = 85/274 (31.02%), Postives = 138/274 (50.36%), Query Frame = 2
Query: 2 TEFMRRKISREGW-ETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTREFRDDQLKKRG-WPLWEIFGLLLFYIFEGIKMI 817
T F+R+++ G+ E ++ +WGRGVD +F+P RS RR G+ +++ LW+GR+V EK P +W + ++ D+E L R + VG+G M+ LGW +G LA V AS D+ + PSE+ETFG VTLEA++ G+ C+ + C HLV VNGF V + D Y + R LV R++ + R + V + M+ Y + R + +RG W +++ +L+++ F + M+
Sbjct: 235 TPFVRKRLVDSGFPENRVSLWGRGVDLKMFNPNFRSMAFRRGRGIADDEVVILWVGRLVKEKSPDIWAEVIRRL----------------DQEGLKFRAL--VVGSGSYEEHMKKLPRTEHLGWMSGAALAEVYASVDLFLFPSEVETFGNVTLEALASGVPCIASAGCSGHLVHHGVNGFVVCRADVDEYHSLTRELVVNGPLRARFAEKARGSIVSLEHDRVMDMMVANYEGVVQAYHRPGGEGCSSRRGGWG--DVYIMLVYHFFSFLMML 488
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7U4J927_9SPHN (Glycosyl transferase family 1 n=1 Tax=Sphingomonas hengshuiensis TaxID=1609977 RepID=A0A7U4J927_9SPHN) HSP 1 Score: 130 bits (326), Expect = 4.490e-31 Identity = 85/222 (38.29%), Postives = 115/222 (51.80%), Query Frame = 2
Query: 35 GWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMG-IMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGD-HLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVY 694
G T +G+W RGVD F+P RRS RR LG+ ++ A +LGR+V EK ++ A V A + + RV+ VG G A + G G++ GE+LAR VAS DV+ PS ETFG VTLEAM+CG+ V R G L++D VNGF VP E GY + RL +E E + A+G A+GY + + +LE Y
Sbjct: 171 GVTTPIGIWSRGVDHAAFNPQRRSLEWRRDLGIADDEFAVGFLGRLVLEKGLDIF----------------AGVVAALEARGVKHRVL--VVGDGPARDWFAERVPGAAFAGFQRGEDLARAVASMDVLFNPSVTETFGNVTLEAMACGVPVVAARATGAVDLIEDGVNGFLVPPREIAGYTDAIARLAQEPELAASAGASGHAKALGYEWDRINQAVLEAY 374
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A6A8Q6T1_9BACT (Glycosyltransferase family 1 protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q6T1_9BACT) HSP 1 Score: 126 bits (316), Expect = 1.440e-29 Identity = 82/235 (34.89%), Postives = 118/235 (50.21%), Query Frame = 2
Query: 11 MRRKISREGWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGA-EGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDH-LVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDK 709
M ++ R G+ +W RGV+ D FSPA+R + RR +G +DI ++ R+V EK+ ++++V +V A P+V + VG+G A +Q G+ GE+LAR AS D+ + PS ETFG VTLEAMSCGL C+V G LV+ VNG K + L +V + E R +M AA RQ A+ Y E+ ++E YR K
Sbjct: 167 MIEELKRHGFNDHAHIWARGVETDHFSPAKRDEGWRRSVGFEEDDIVVTFVSRLVWEKELDTYMQSVQRVA------------------AKNPKVKPLVVGSGPAKEELQKLMPEAVYTGFLGGEDLARAYASSDIFLFPSHTETFGNVTLEAMSCGLPCLVADAVGSKSLVEHGVNGLLGEAENKADFTKKLGVIVSDAELRKQMGAASRQKALQYEWNEINGALVENYRQALK 383
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A5C6UD41_9SPHN (Glycosyltransferase family 1 protein n=1 Tax=Sphingomonas ginsenosidivorax TaxID=862135 RepID=A0A5C6UD41_9SPHN) HSP 1 Score: 124 bits (311), Expect = 6.700e-29 Identity = 84/227 (37.00%), Postives = 116/227 (51.10%), Query Frame = 2
Query: 23 ISRE-GWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMG-IMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGD-HLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVY 694
I RE G T +G+W RGV+ + F+PARR RR LG+G +++A +LGR+V EK V+ V ++ + +P RV+ +G G A + G G+++G+ L R VAS DV PS ETFG VTLEAM+ G+ V R G L+ D V GF VP E GY + R+V E R+ M AG A GY + E +L+ Y
Sbjct: 166 IVREWGVTTPVGIWSRGVNHERFTPARRDLDWRRGLGIGDDEVAVGFLGRLVKEKGLDVFANVVRTLR----------------DRGVPHRVL--VIGEGPARDWFAEQVPGAVFAGFQSGDALGRAVASMDVFFNPSVTETFGNVTLEAMAAGVPVVAARASGAIGLIDDGVTGFLVPPTEIGGYADAIARIVTEPGLRTSMGQAGHAKAAGYRWDTINESVLDAY 374 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60047.13539.1 >prot_H-elongata_contig60047.13539.1 ID=prot_H-elongata_contig60047.13539.1|Name=mRNA_H-elongata_contig60047.13539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp MRRKISREGWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWback to top mRNA from alignment at H-elongata_contig60047:135..3290+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60047.13539.1 ID=mRNA_H-elongata_contig60047.13539.1|Name=mRNA_H-elongata_contig60047.13539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3156bp|location=Sequence derived from alignment at H-elongata_contig60047:135..3290+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60047:135..3290+ >mRNA_H-elongata_contig60047.13539.1 ID=mRNA_H-elongata_contig60047.13539.1|Name=mRNA_H-elongata_contig60047.13539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at H-elongata_contig60047:135..3290+ (Himanthalia elongata Himel1 dioecious)back to top |