mRNA_H-elongata_contig60019.13537.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60019.13537.1
Unique NamemRNA_H-elongata_contig60019.13537.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60019.13537.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.270e-7
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:  529 ATATSPEVEAAVYD-ELYGCHLATSFAPYPSALKLAPGLLDHNLAHLELGSNDSGA-QLATTHGTAMRMDNVGGLSVGLSPGVL 774
            A+A+  +  A + D E +G     SF+P+PSALKLAPGL+DH+  H +     +G  +L+  HG  MRM NV GLS+ L+PG L
Sbjct:  108 ASASHAQASAIIEDQEQFGLE---SFSPFPSALKLAPGLVDHSQRHDKDKETTTGLDRLSARHGARMRMSNVEGLSIELTPGTL 188
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BLAST of mRNA_H-elongata_contig60019.13537.1 vs. uniprot
Match: A0A2I6U1S5_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1S5_SACJA)

HSP 1 Score: 62.8 bits (151), Expect = 1.660e-7
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  532 TATSPEVEAAVYDELYGCHLATSFAPYPSALKLAPGLLDHNLAHLELGSNDSGAQLATTHGTAMRMDNVGGLSVGLSPGVL 774
            TA+  E  A   +  YG    TS +P+PSALK+APG+L+H ++  +  ++ S  +LATTHG  MR  NV GL++ LSPG L
Sbjct:  120 TASHAEARAMSDNPYYGL---TSISPFPSALKVAPGVLEHGVSRDQ--ASQSPGRLATTHGHLMRKGNVEGLNLELSPGTL 195
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BLAST of mRNA_H-elongata_contig60019.13537.1 vs. uniprot
Match: A0A6H5K7G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.940e-7
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  529 ATATSPEVEAAVYD-ELYGCHLATSFAPYPSALKLAPGLLDHNLAHLELGSNDSGA-QLATTHGTAMRMDNVGGLSVGLSPGVL 774
            ATA+  +  A + D E +G     SF+P+PSALKLAPGL+DH+ +    G   SG  +L   HG  MRM NV GL+V L+P  L
Sbjct:  106 ATASHAQASAIMEDQEQFGLE---SFSPFPSALKLAPGLVDHSESREVEGEPSSGQDRLGARHGGTMRMSNVEGLNVKLTPDTL 186
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BLAST of mRNA_H-elongata_contig60019.13537.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 60.8 bits (146), Expect = 7.160e-7
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:  532 TATSPEVEAAVYDELYGCHLATSFAPYPSALKLAPGLLDHNLAHLELGSNDSGAQLATTHGTAMRMDNVGGLSVGLSPGVL 774
            TA+  E  A      YG    TS +P+PSALK+APG+L+H ++ L+  S   G +L TTHG  MR  NV GL++ LSPG L
Sbjct:  120 TASHAEARAMSDSPYYGL---TSISPFPSALKVAPGVLEHGVS-LDQASQSPG-RLTTTHGHLMRKGNVEGLNMELSPGTL 195
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BLAST of mRNA_H-elongata_contig60019.13537.1 vs. uniprot
Match: A0A6H5K229_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K229_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 9.870e-7
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  529 ATATSPEVEAAVYD-ELYGCHLATSFAPYPSALKLAPGLLDHNLAHLELGSNDSGA-QLATTHGTAMRMDNVGGLSVGLSPGVL 774
            ATA+  +  A + D E +G     SF+P+PSALKLAPGL+DH+ +    G   SG  +L   HG  MRM NV GL+V L+P  L
Sbjct:  118 ATASHAQASAIMEDQEQFGLE---SFSPFPSALKLAPGLVDHSESREVEGEPSSGQDRLGARHGGTMRMSNVEGLNVKLTPDTL 198
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BLAST of mRNA_H-elongata_contig60019.13537.1 vs. uniprot
Match: A0A6H5LIN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIN3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.350e-6
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  529 ATATSPEVEAAVYD-ELYGCHLATSFAPYPSALKLAPGLLDHNLAH--LELGSNDSG-AQLATTHGTAMRMDNVGGLSVGLSPGVL 774
            A+A+  +  A V D E +G     +F+P+PS LKLAPGL+DH+ +H   E  +  SG  +L   HG  MR  NV GLSV L+PG L
Sbjct:  113 ASASHAQAAAIVEDQEQFGLE---NFSPFPSPLKLAPGLVDHSESHDEAEEEARTSGLTRLRARHGARMRKPNVEGLSVELTPGTL 195
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BLAST of mRNA_H-elongata_contig60019.13537.1 vs. uniprot
Match: D8LNG6_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG6_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 7.680e-6
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  529 ATATSPEVEAAVYD-ELYGCHLATSFAPYPSALKLAPGLLDHNLAH--LELGSNDSGA-QLATTHGTAMRMDNVGGLSVGLSPGVL 774
            A+A+  +  A V D E +G     +F+P+PS LKLAPGL+DH  +H   E  +  SG  +L+  HG  MR  NV GLSV L+PG L
Sbjct:  113 ASASHAQAAAIVEDQEQFGLE---NFSPFPSPLKLAPGLVDHTESHDEAEEEARSSGLDRLSARHGARMRKPNVEGLSVELTPGTL 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60019.13537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JQT4_9PHAE1.270e-745.24Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A2I6U1S5_SACJA1.660e-745.68Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A6H5K7G6_9PHAE4.940e-746.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2I6U1R2_SACJA7.160e-746.91Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
A0A6H5K229_9PHAE9.870e-746.43Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
A0A6H5LIN3_9PHAE5.350e-645.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNG6_ECTSI7.680e-645.35Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60019contigH-elongata_contig60019:1947..2885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog2880.D8LNG5
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size790
Cds size600
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60019.13537.1prot_H-elongata_contig60019.13537.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60019 2136..2885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.442876-UTR-H-elongata_contig60019:1946..21351622930973.442876-UTR-H-elongata_contig60019:1946..2135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60019 1947..2135 +
1691679646.8539991-UTR-H-elongata_contig60019:1946..21351691679646.8539991-UTR-H-elongata_contig60019:1946..2135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60019 1947..2135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.4618156-CDS-H-elongata_contig60019:2135..24751622930973.4618156-CDS-H-elongata_contig60019:2135..2475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60019 2136..2475 +
1691679646.8659744-CDS-H-elongata_contig60019:2135..24751691679646.8659744-CDS-H-elongata_contig60019:2135..2475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60019 2136..2475 +
1622930973.4733672-CDS-H-elongata_contig60019:2625..28851622930973.4733672-CDS-H-elongata_contig60019:2625..2885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60019 2626..2885 +
1691679646.8773932-CDS-H-elongata_contig60019:2625..28851691679646.8773932-CDS-H-elongata_contig60019:2625..2885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60019 2626..2885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60019.13537.1

>prot_H-elongata_contig60019.13537.1 ID=prot_H-elongata_contig60019.13537.1|Name=mRNA_H-elongata_contig60019.13537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
MTCSRNENGCEGWPASSGAGRKGRSGQIRKSRTLCGCNPTPSNAWWLYIL
PLILTFRSSLGARSSGRAGSLPPLALVEEILITTAQNDFGGKENTYQAAI
EWSWDRLLRTIGTATATSPEVEAAVYDELYGCHLATSFAPYPSALKLAPG
LLDHNLAHLELGSNDSGAQLATTHGTAMRMDNVGGLSVGLSPGVLHIQGK
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mRNA from alignment at H-elongata_contig60019:1947..2885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60019.13537.1 ID=mRNA_H-elongata_contig60019.13537.1|Name=mRNA_H-elongata_contig60019.13537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=939bp|location=Sequence derived from alignment at H-elongata_contig60019:1947..2885+ (Himanthalia elongata Himel1 dioecious)
AAAGTTCTTGAAAGATAGTTGATCCCCTGGACTGCACCTCTCACAGCGGT
ATTTTGTGTAATAAAGAACGAAAGACCCGTCGCGTTATCATCAGAGGTGA
GCGAATTGGGAAGGTGCTTGTATCAACGGCAGGGAAGGCAATCCCAGTCT
TCTGCCGGTGAGGGTACTGGTACCTCTCCACTGCTAGGTATGACCTGCTC
GAGGAACGAGAATGGTTGTGAGGGTTGGCCTGCCAGTTCGGGAGCTGGAC
GGAAAGGCCGGTCGGGGCAAATTCGCAAAAGTAGAACACTTTGTGGTTGT
AACCCAACACCTTCGAACGCCTGGTGGTTATATATTCTTCCCCTGATTTT
GACCTTTCGCAGCTCCTTGGGAGCTCGAAGCTCCGGACGTGCCGGTAGCT
TGCCGCCGCTCGCCCTTGTGGAGGAAATTCTCATCACGACAGCACAGAAT
GACTTCGGAGGGAAGGAAAATACTTACCAGGCGGCGATAGAGTGGTCTTG
GGACAGATTGCTGAGAACCATCGGTACTGGTAGCGATATAGAAGGAAACT
ATCATGGAGCTCCTTACATAGTGTGCTCCGATTCCCCGAAGGAGGCTCTT
GGGCGTTTAGAGTCGAGACTTTCTCCGAGATATGTCCGAAAACTTGCCAT
CGGGGACGATTTTGGCGCTTGTTTCTTAGCGACAGCGACATCTCCAGAGG
TAGAGGCGGCTGTATACGACGAGCTTTACGGTTGTCATCTGGCCACTTCT
TTTGCCCCATATCCTTCCGCACTGAAGCTAGCACCTGGCTTGCTCGACCA
CAACTTAGCCCATCTCGAGCTGGGCAGCAATGATTCTGGGGCGCAGCTGG
CCACGACGCACGGAACGGCGATGCGAATGGATAACGTGGGAGGCTTGAGT
GTGGGGCTATCTCCAGGAGTGCTTCATATTCAAGGCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig60019:1947..2885+

>mRNA_H-elongata_contig60019.13537.1 ID=mRNA_H-elongata_contig60019.13537.1|Name=mRNA_H-elongata_contig60019.13537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig60019:1947..2885+ (Himanthalia elongata Himel1 dioecious)
ATGACCTGCTCGAGGAACGAGAATGGTTGTGAGGGTTGGCCTGCCAGTTC
GGGAGCTGGACGGAAAGGCCGGTCGGGGCAAATTCGCAAAAGTAGAACAC
TTTGTGGTTGTAACCCAACACCTTCGAACGCCTGGTGGTTATATATTCTT
CCCCTGATTTTGACCTTTCGCAGCTCCTTGGGAGCTCGAAGCTCCGGACG
TGCCGGTAGCTTGCCGCCGCTCGCCCTTGTGGAGGAAATTCTCATCACGA
CAGCACAGAATGACTTCGGAGGGAAGGAAAATACTTACCAGGCGGCGATA
GAGTGGTCTTGGGACAGATTGCTGAGAACCATCGGTACTGATGACCTGCT
CGAGGAACGAGAATGGTTGTGAGGGTTGGCCTGCCAGTTCGGGAGCTGGA
CGGAAAGGCCGGTCGGGGCAAATTCGCAAAAGTAGAACACTTTGTGGTTG
TAACCCAACACCTTCGAACGCCTGGTGGTTATATATTCTTCCCCTGATTT
TGACCTTTCGCAGCTCCTTGGGAGCTCGAAGCTCCGGACGTGCCGGTAGC
TTGCCGCCGCTCGCCCTTGTGGAGGAAATTCTCATCACGACAGCACAGAA
TGACTTCGGAGGGAAGGAAAATACTTACCAGGCGGCGATAGAGTGGTCTT
GGGACAGATTGCTGAGAACCATCGGTACTGCGACAGCGACATCTCCAGAG
GTAGAGGCGGCTGTATACGACGAGCTTTACGGTTGTCATCTGGCCACTTC
TTTTGCCCCATATCCTTCCGCACTGAAGCTAGCACCTGGCTTGCTCGACC
ACAACTTAGCCCATCTCGAGCTGGGCAGCAATGATTCTGGGGCGCAGCTG
GCCACGACGCACGGAACGGCGATGCGAATGGATAACGTGGGAGGCTTGAG
TGTGGGGCTATCTCCAGGAGTGCTTCATATTCAAGGCAAACGACAGCGAC
ATCTCCAGAGGTAGAGGCGGCTGTATACGACGAGCTTTACGGTTGTCATC
TGGCCACTTCTTTTGCCCCATATCCTTCCGCACTGAAGCTAGCACCTGGC
TTGCTCGACCACAACTTAGCCCATCTCGAGCTGGGCAGCAATGATTCTGG
GGCGCAGCTGGCCACGACGCACGGAACGGCGATGCGAATGGATAACGTGG
GAGGCTTGAGTGTGGGGCTATCTCCAGGAGTGCTTCATATTCAAGGCAAA
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