mRNA_H-elongata_contig60013.13534.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60013.13534.1
Unique NamemRNA_H-elongata_contig60013.13534.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.710e-37
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    1 GDQPDGTMTVHTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTFT 252
            GDQPDGTMTV THR GA+PL G+ES GTI+IQY FPSGTQ  +HPN G  YHGTSRTAYLPDN  GREVL+L +KSF+QRMTFT
Sbjct:  282 GDQPDGTMTVRTHRRGAIPLSGYESDGTILIQYSFPSGTQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFEQRMTFT 365
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BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: A0A7S2XY22_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY22_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.350e-31
Identity = 53/84 (63.10%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 GDQPDGTMTVHTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTFT 252
            GD P GTM V    VG  PL GHE+ GTI I Y FPSGTQGP+HPN G  YHGTSR A+LPD PEG E+L L Q  FD+++TFT
Sbjct:   26 GDMPQGTMQVDRAPVGGCPLAGHEAHGTIFISYQFPSGTQGPQHPNPGRPYHGTSRFAFLPDTPEGNEMLRLLQICFDRKLTFT 109
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BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: A0A671Y6X3_SPAAU (E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671Y6X3_SPAAU)

HSP 1 Score: 108 bits (270), Expect = 6.800e-28
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    1 GDQPDGTMTVHTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTFT 252
            G QPDG M+V       + L G E  GTIVI YYFP G Q  RHPN G RYHGTSRTAYLPDN EG+EVL L QK+F+Q++ FT
Sbjct:   64 GTQPDGKMSVQK---SYLSLPGFEGYGTIVISYYFPDGKQTERHPNPGQRYHGTSRTAYLPDNKEGKEVLHLLQKAFNQKLIFT 144
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BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: A0A835ZAV4_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.410e-27
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    1 GDQPDGTMTVHTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTFT 252
            GDQP+GTM V T     M   G+   GTIVI Y F SG QGP+HP+ G RY GTSR AYLPD P+GR VL+L Q+ FDQR+TFT
Sbjct:   13 GDQPEGTMNVTTSP--HMHCSGYAGAGTIVINYAFSSGIQGPKHPHPGQRYSGTSRVAYLPDTPDGRAVLALLQRCFDQRLTFT 94
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BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: C3Y3J1_BRAFL (E3 ubiquitin-protein ligase (Fragment) n=3 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y3J1_BRAFL)

HSP 1 Score: 105 bits (261), Expect = 1.030e-26
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 GDQPDGTMTVHTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTFT 252
            G+QP G M  HT     +P  G+E+ GTIVI YYF SGTQGP HPN GH + GTSRTAYLP+N EGRE + L +++FD R+ FT
Sbjct:   47 GNQPPGRMDWHTDYGTRLP--GYENYGTIVINYYFSSGTQGPDHPNPGHHFSGTSRTAYLPNNEEGREFVQLLKRAFDNRLVFT 128
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BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: A0A6V1P2Q7_HETAK (RING-type E3 ubiquitin transferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P2Q7_HETAK)

HSP 1 Score: 106 bits (265), Expect = 1.040e-26
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 GDQPDGTMTVHTHRVGAMPLQGHE-SVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTF 249
            GDQPDGTMTV T      PL G   + GTI++QY+FPSG QGP+H N G  Y GTSRTAYLPD  EGREVL L +++FDQR+ F
Sbjct:  104 GDQPDGTMTVSTQ--ANQPLPGFPPNSGTIILQYHFPSGIQGPQHSNPGQPYSGTSRTAYLPDTAEGREVLGLLRRAFDQRLVF 185
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BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: A0A1S3K0S9_LINUN (E3 ubiquitin-protein ligase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K0S9_LINUN)

HSP 1 Score: 110 bits (274), Expect = 1.810e-26
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 GDQPD-GTMTV-HTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTFT 252
            GDQPD GTMTV + HR    PL+G+E VGTIVI YYFPSG Q   HP+ G RY GTSRTAYLPD+ EGREVL L Q++F+ R+ FT
Sbjct:  360 GDQPDNGTMTVSYWHR----PLEGYEGVGTIVIDYYFPSGVQKSEHPDPGSRYQGTSRTAYLPDSKEGREVLRLLQRAFEARLLFT 441
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BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: A0A1S3JHB5_LINUN (E3 ubiquitin-protein ligase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JHB5_LINUN)

HSP 1 Score: 110 bits (274), Expect = 3.110e-26
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 GDQPD-GTMTV-HTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTFT 252
            GDQPD GTMTV + HR    PL+G+E VGTIVI YYFPSG Q   HP+ G RY GTSRTAYLPD+ EGREVL L Q++F+ R+ FT
Sbjct:  576 GDQPDDGTMTVSYWHR----PLEGYEGVGTIVIDYYFPSGVQKSEHPDPGSRYKGTSRTAYLPDSKEGREVLKLLQRAFEARLLFT 657
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BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: A0A671YA43_SPAAU (E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671YA43_SPAAU)

HSP 1 Score: 105 bits (262), Expect = 3.270e-26
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 GDQPDGTMTVHTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTFT 252
            G QPDGTM+ +  R  ++P  G E  GTIVI YY PSG Q  RHPN G RYHGTSRTAYLPDN EG+EVL L +++F+Q++ FT
Sbjct:  108 GTQPDGTMSSYK-RTPSLP--GFEDCGTIVIDYYIPSGKQTERHPNPGQRYHGTSRTAYLPDNKEGKEVLRLLRRAFNQKLIFT 188
[Close]
BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Match: A0A671YA38_SPAAU (E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671YA38_SPAAU)

HSP 1 Score: 104 bits (259), Expect = 3.750e-26
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    1 GDQPDGTMTVHTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRTAYLPDNPEGREVLSLFQKSFDQRMTFT 252
            G QPDGTM+ +      + L G E  GTIVI YY PSG Q  RHPN G RY GTSRTAYLPDN EG+EVL L QK+F+Q++ FT
Sbjct:   72 GIQPDGTMSSYK---SDLSLPGFEDCGTIVIDYYLPSGEQTERHPNPGQRYDGTSRTAYLPDNKEGKEVLHLLQKAFNQKLIFT 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60013.13534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP8_ECTSI1.710e-3776.19RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A7S2XY22_9STRA1.350e-3163.10RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A671Y6X3_SPAAU6.800e-2861.90E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata ... [more]
A0A835ZAV4_9STRA1.410e-2760.71RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
C3Y3J1_BRAFL1.030e-2658.33E3 ubiquitin-protein ligase (Fragment) n=3 Tax=Bra... [more]
A0A6V1P2Q7_HETAK1.040e-2661.90RING-type E3 ubiquitin transferase n=1 Tax=Heteros... [more]
A0A1S3K0S9_LINUN1.810e-2665.12E3 ubiquitin-protein ligase n=1 Tax=Lingula unguis... [more]
A0A1S3JHB5_LINUN3.110e-2665.12E3 ubiquitin-protein ligase n=1 Tax=Lingula unguis... [more]
A0A671YA43_SPAAU3.270e-2660.71E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata ... [more]
A0A671YA38_SPAAU3.750e-2660.71E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60013contigH-elongata_contig60013:1873..3054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D8LIP8
Preferred nameDTX3L
KEGG koko:K06058
KEGG Pathwayko04330,map04330
GOsGO:0000209,GO:0000323,GO:0002230,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004842,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006325,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006996,GO:0007034,GO:0007041,GO:0008047,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010390,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0016043,GO:0016192,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032268,GO:0032269,GO:0032446,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033523,GO:0033554,GO:0034641,GO:0035561,GO:0035563,GO:0036211,GO:0042393,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0043900,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045739,GO:0045893,GO:0045935,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050688,GO:0050691,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051338,GO:0051340,GO:0051347,GO:0051348,GO:0051352,GO:0051438,GO:0051444,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051865,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097677,GO:0098772,GO:0140096,GO:1900180,GO:1900182,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901664,GO:1901666,GO:1902680,GO:1902965,GO:1902966,GO:1903320,GO:1903321,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1905666,GO:1905668,GO:2000112,GO:2000644,GO:2000646,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001032,GO:2001034,GO:2001141
EggNOG free text desc.regulation of NAD ADP-ribosyltransferase activity
EggNOG OGs2CTH7@1,2RGAW@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-25_003220.1
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60013.13534.1prot_H-elongata_contig60013.13534.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60013 1894..3054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.1791193-UTR-H-elongata_contig60013:1872..18931622930973.1791193-UTR-H-elongata_contig60013:1872..1893Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60013 1873..1893 +
1691679646.7388787-UTR-H-elongata_contig60013:1872..18931691679646.7388787-UTR-H-elongata_contig60013:1872..1893Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60013 1873..1893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.2203963-CDS-H-elongata_contig60013:1893..20551622930973.2203963-CDS-H-elongata_contig60013:1893..2055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60013 1894..2055 +
1691679646.7612944-CDS-H-elongata_contig60013:1893..20551691679646.7612944-CDS-H-elongata_contig60013:1893..2055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60013 1894..2055 +
1622930973.2368522-CDS-H-elongata_contig60013:2985..30541622930973.2368522-CDS-H-elongata_contig60013:2985..3054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60013 2986..3054 +
1691679646.7845001-CDS-H-elongata_contig60013:2985..30541691679646.7845001-CDS-H-elongata_contig60013:2985..3054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60013 2986..3054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60013.13534.1

>prot_H-elongata_contig60013.13534.1 ID=prot_H-elongata_contig60013.13534.1|Name=mRNA_H-elongata_contig60013.13534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MTVHTHRVGAMPLQGHESVGTIVIQYYFPSGTQGPRHPNTGHRYHGTSRT
AYLPDNPEGREVLSLFQKSFDQRMTFT
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mRNA from alignment at H-elongata_contig60013:1873..3054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60013.13534.1 ID=mRNA_H-elongata_contig60013.13534.1|Name=mRNA_H-elongata_contig60013.13534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1182bp|location=Sequence derived from alignment at H-elongata_contig60013:1873..3054+ (Himanthalia elongata Himel1 dioecious)
GGCGATCAGCCGGATGGAACGATGACCGTTCACACCCACCGTGTGGGAGC
CATGCCTCTGCAAGGACACGAATCGGTGGGGACGATCGTGATCCAGTACT
ACTTCCCGAGCGGGACCCAGGGACCTCGGCATCCGAACACCGGTCACCGC
TACCATGGAACGAGCCGGACCGCCTATCTTCCCGTAAGGAGAGGGATAGA
AGGGTGGAATTTTGATGCCACTGGTTGGTTGGTTAATTGTTAACTGTCAA
GTTGTTTTTTTTAAATAATAATAATGGAATAACCTCTGGAGGTGCGCTAC
AAAGGCGTGGATGTTCGATGTTCGGAGGGTGTTGGAATGAGTGTTATGTC
TTTTGTTTTGTTTATTGTGAGAAAAATGTTTCGAATGGCGATGTAAAAAA
ATGAGGCGATCAATATTTCGAGGAAAAAGGCACACTATTTTTAGTGTCAT
CGTTTTACTCTAATACAGTGTTTTATCGTGAAAACAGACGTCTTCTTTCC
CCTGACTATCGCTTCGTCTATTAATAGGGTTGTTGAGTAATGTACCAGTG
TACAAGGTGTTCCGCTTCGATTTTTTGCTCCACAGTTCTCGCGAGGATTT
TGAGTTTTGGGATTCGAACCACGACGACCATATAAACGAATGCTTTTTCG
AATATTTGGGGGAGTGATAATTGTGACTACGGGAAAAAATAGCATATAAT
AACGTTAATTTCATGCAGAGTAAAATAGCCGTTTCTCTGAAACCTTCATA
TACTGGCTGACCCAACCCGCCCTCTAACCCTAACCCACACGCACCCACCC
ATGGGACTCATGGGGATCTATGAACCTTAATTTTATAGCGGAAACCCCGG
AGATGACCCCTTATATGTCCCCGTCGTCACAAACTAAATTGTGACTATGT
AGTCACAATAATCAGTTCTCAAATATTTGAGAATAAAACTCGCTTACCGG
AACGCCTCCACGACGGGGCACTGTACGGTACGGTGAGGTGTCGCCGAAGA
CCTATTATTATATAGAAACATAAACGGAAGCGGTTATTTGTCGAGATCTC
TCCCTCTTTGTCTGTCTGTGTGTATGTCGTTATTGTATTCCGTGATTTTC
GTTACGATTATAGGACAATCCTGAAGGAAGGGAGGTGCTCTCTCTATTTC
AAAAGTCTTTTGACCAGCGGATGACGTTCACG
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Coding sequence (CDS) from alignment at H-elongata_contig60013:1873..3054+

>mRNA_H-elongata_contig60013.13534.1 ID=mRNA_H-elongata_contig60013.13534.1|Name=mRNA_H-elongata_contig60013.13534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig60013:1873..3054+ (Himanthalia elongata Himel1 dioecious)
ATGACCGTTCACACCCACCGTGTGGGAGCCATGCCTCTGCAAGGACACGA
ATCGGTGGGGACGATCGTGATCCAGTACTACTTCCCGAGCGGGACCCAGG
GACCTCGGCATCCGAACACCGGTCACCGCTACCATGGAACGAGCCGGACC
GCCTATCTTCCCATGACCGTTCACACCCACCGTGTGGGAGCCATGCCTCT
GCAAGGACACGAATCGGTGGGGACGATCGTGATCCAGTACTACTTCCCGA
GCGGGACCCAGGGACCTCGGCATCCGAACACCGGTCACCGCTACCATGGA
ACGAGCCGGACCGCCTATCTTCCCGACAATCCTGAAGGAAGGGAGGTGCT
CTCTCTATTTCAAAAGTCTTTTGACCAGCGGATGACGTTCACGGACAATC
CTGAAGGAAGGGAGGTGCTCTCTCTATTTCAAAAGTCTTTTGACCAGCGG
ATGACGTTCACG
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