mRNA_H-elongata_contig6.13532.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6.13532.1
Unique NamemRNA_H-elongata_contig6.13532.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: D8LR28_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR28_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 1.340e-142
Identity = 232/348 (66.67%), Postives = 269/348 (77.30%), Query Frame = 3
Query:    3 RIMLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDK-LLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQ--RHSDGEAVKVQGAEDGQ-----AGALARDAISRR------------SMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAHAWVEERARG 986
            RIMLE SEV+R E+G L ATL AADSRT HVR VLKV +GE VRVGVV+ G +DDA+I+W EP   PE  PP DIPG +K RK    W DLVL LG SD+ LL+ VP E+RPKVALMLA+PRPLQLERILP+V+SLGV T+VLC+A KV K YFGSH FRDP S+REKL+EGLSQSGDTV+P+V+VARRLK+FLEDDLDR FP++RWVR +AHPTRL AQ  R + GEA     A  G+     AG +A  A S R             +  +RFS+IEPP+GCDP+DVGVLV +GPEGGWVEP+EL LLQSFGFQAVTLG+RVLRSDVAV ALLALAHAWV+ERA G
Sbjct:   87 RIMLEPSEVVRDEEGNLSATLPAADSRTAHVRGVLKVENGESVRVGVVNAGRMDDASIAWEEPTDPPEGAPPPDIPGRQKGRKSSPKWMDLVLDLGPSDRQLLKPVPDEQRPKVALMLAVPRPLQLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPPSVREKLIEGLSQSGDTVMPEVMVARRLKIFLEDDLDRCFPRDRWVRALAHPTRLPAQVSRCAGGEATAAATAAGGEGVGVEAGVVAATAQSGRVDGVESDGAATAPVPALRFSQIEPPKGCDPADVGVLVAVGPEGGWVEPDELQLLQSFGFQAVTLGSRVLRSDVAVNALLALAHAWVDERAAG 434          
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A6H5KW92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW92_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 4.110e-105
Identity = 195/366 (53.28%), Postives = 238/366 (65.03%), Query Frame = 3
Query:    9 MLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDK-LLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTV-------------------LPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQ--RHSDGEAVKVQGAEDGQAGALARDAISRRSMCG-----------------VRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSF-GFQAVTLGARVLRSDVAVCALLALAHAWVEERARG 986
            MLE +EV+R E+G L ATL AADSRT HVR VLKV +GEPVRVGVV+ G +DDA+I+W +P   PE TPP D+PG +K RK    W DLVL LG SD+ LL+ VP E+RPKVALMLA+PRPL+LERILP+V+SLGV T+VLC+A KV K YFGSH FRDP S+R KL+EGLSQ  D V                   LP+VIVARRL +FLEDDLDR FP++RWVR +AHPTRL AQ  R + GEA        G+   +    ++  +  G                 +RFS+IEPP+G      G+  +      W    E+    +F   +AVTLG+RVLRSDVAV ALLALAHAWV+ERA G
Sbjct:    1 MLEPAEVVRDEEGNLSATLPAADSRTAHVRGVLKVENGEPVRVGVVNAGRMDDASITWEDPTDPPEGTPPPDVPGRQKDRKSSPKWMDLVLDLGPSDRQLLKPVPDEQRPKVALMLAVPRPLKLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPLSVRAKLIEGLSQVSDEVRVFRQVKHFDNMENRAAFVLPEVIVARRLNIFLEDDLDRCFPRDRWVRALAHPTRLPAQVARCAGGEATAAATVAGGEGVGVEAGVVAATTQIGRVDGVESDGAATTPAPALRFSQIEPPKG------GIAGSALMHEQWQICFEMSYYATFVKGKAVTLGSRVLRSDVAVNALLALAHAWVDERAAG 360          
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A835YRY5_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY5_9STRA)

HSP 1 Score: 226 bits (575), Expect = 8.810e-65
Identity = 148/373 (39.68%), Postives = 192/373 (51.47%), Query Frame = 3
Query:    3 RIMLEQSEVIRGEDG-GLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPED----------------TPPSDIPGGKK---HRKVVS-----------------NWRD----------LVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAHAWVEERA 980
            R+M+E  EV   + G   +  L   D+RT H+RS+LKV D   VR GVVD G           P+                     TP + +P       HR                      W D          L L LG +  +L  +P   RP+V L+LA PRPLQLER+LPM+SSLGVD+LVL  A+KVEK YFGSHL R P+++R KLVEG +QSG TVLP+  + RRLK+FLED+L+ L+P++  +R +AHPTR +                               +    R S + PPE        V++ +GPEGGW EP EL++ ++ GF  VTLG RVLRSDVAV ALLALAH WV+  A
Sbjct:   61 RVMIEPEEVQLADGGESCFCVLAHNDTRTEHLRSILKVEDAGTVRTGVVDAGECHATGKHASSPHPQAHGGGAACADTMVHASALCTPTAAVPRSAHAVAHRHXXXXXXXXXXAARSCDASAVTWLDSAAAERSAAPLRLDLG-APAILAPLPPRNRPRVDLLLAAPRPLQLERMLPMISSLGVDSLVLINAAKVEKSYFGSHLMRKPEALRAKLVEGCTQSGSTVLPRTTIKRRLKIFLEDELESLYPRDTCLRVIAHPTRAD------------------------------NTTPAPRLSTLPPPEKATAHTARVVIAVGPEGGWDEPFELEMFEAHGFVPVTLGTRVLRSDVAVNALLALAHDWVDSLA 402          
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A1Z5JKH5_FISSO (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKH5_FISSO)

HSP 1 Score: 194 bits (494), Expect = 3.500e-54
Identity = 129/326 (39.57%), Postives = 166/326 (50.92%), Query Frame = 3
Query:    3 RIMLEQSEVIRGEDGGL-YATLCAADSRTHHVRSVLKVADGEPVRVGVVDRG-----LIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELD-LLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
            R +L   EV + ED  L YA L   D RT H   +L + +G+ VR G+V        L D A + W              +P GK  +  V N  D    L    + L+   Q     V+L+LALPRPLQL R+LPM+S +GVD LVL  A KV K YFGSHLFR P+ + E+L+EGL QSGDT LP+V V + L  F++D LD LFP     R +AHP R+   R                        I    M  V F    P          +++ +GPEGGW EPNE++  +   GFQ +T+G RVLRSD AV +LL LAH
Sbjct:   20 RFLLSPEEVSQDEDSSLPYAVLGKDDYRTIHAAKILNLRNGDSVRAGLVSSEDHNGFLTDHATVQW--------------LPEGKVKKAEVLNNGDPPGSLHIRLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPQVTVVKNLSQFMDDTLDELFPLHSHARVIAHPQRVVKDR-----------------------VIESVRMRSVTFPTDSPRR--------MVIAVGPEGGWEEPNEIERFVNQHGFQQITMGTRVLRSDCAVVSLLGLAH 300          
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A6V2MGD3_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2MGD3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 8.680e-54
Identity = 136/325 (41.85%), Postives = 174/325 (53.54%), Query Frame = 3
Query:   54 YATLCAADSRTHHVRSVLKVADGEPVRVGVV---------------DRGLI-DDAAISWREPNKLP--EDTPPSDIPGGKKHRKVVSNWRDLVLKLGT-----SDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
            Y TL   D RT H   +L V +G+ +R G+V               + GLI D+A I W    K+   E T   D PG         + R L+  L +     SD          +P V+L+LALPRPLQL RILPMV+ LGVD LVL  A KV K YFGSHLFR P  +R  L+EGL Q+GD  +PKV V RRLK FLEDDLD +FP + + R +AHP R E     +GE +            +    +  R +     S  E  +   P    +++ +GPEGGW E  EL++ Q  GFQ +TLG RVLRSDVAV +LL+LAH
Sbjct:  142 YVTLPKNDYRTVHAAKILNVHNGDTIRAGIVGEDDLISNDDASSYQNSGLITDEAVIEWLPEGKIKKAEPTKNGDPPG---------SLRVLLHSLTSPYTTPSDDTASSSSSYSQP-VSLILALPRPLQLGRILPMVAQLGVDHLVLTSAQKVPKDYFGSHLFRKPNELRRHLIEGLCQAGDVKIPKVTVVRRLKPFLEDDLDSMFPLDEYARVIAHPQR-EKIVLENGETI------------IPAPPLRMRDVVFPESSNTEQEQHQQPR---IVLAVGPEGGWAEDYELNMFQKCGFQQITLGKRVLRSDVAVVSLLSLAH 440          
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A1Z5K163_FISSO (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K163_FISSO)

HSP 1 Score: 190 bits (483), Expect = 2.580e-52
Identity = 126/326 (38.65%), Postives = 166/326 (50.92%), Query Frame = 3
Query:    3 RIMLEQSEVIRGEDGGL-YATLCAADSRTHHVRSVLKVADGEPVRVGVVDRG-----LIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELD-LLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
            R +L   EV R +D  L YA L   D RT H   +L + +G+ VR G+V        L D A + W              +P GK  +  V N  +    L  + + L+   Q     V+L+LALPRPLQL R+LPM+S +GVD LVL  A KV K YFGSHLFR P+ + E+L+EGL QSGDT LPKV + + L  FL+  +D LFP   + R +AHP R+   R                        I    M  V F    P +        +++ +GPEGGW EPNE+D  +    F  +T+G RVLRSD AV +LL LAH
Sbjct:   42 RFLLSAEEVSRDKDATLPYAILGKDDYRTIHAAKILNLRNGDSVRAGLVSSNDNNGFLTDHATVQW--------------LPEGKIKKAEVLNNGEPPGSLHITLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPKVTIVKSLSQFLDGKVDELFPLHSYARVIAHPQRVVEDR-----------------------VIESVRMRSVSFPTDSPRK--------IVIAVGPEGGWEEPNEIDRFVNEHDFHQITMGTRVLRSDCAVVSLLGLAH 322          
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A7S1BIA7_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIA7_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.090e-52
Identity = 137/329 (41.64%), Postives = 173/329 (52.58%), Query Frame = 3
Query:    3 RIMLEQSEV-IRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPEDTPPSDIPGGK--KHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPK-ERW--VRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVG----VLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
            R + + SEV   GE   +  T+   D RT H   VL V +GE VR G+V  GL D+A ++W              IP GK  K     +      L+L   + +           V+L+LA PRPL L RILP+VS +GVD LVLC ASKV K YFGSHLFR  + + + LVEGL Q+GD  LP+V VARRLK+FLEDDLD +FP  ER    R +AHPTR    +   G+                   I  R    VR  E+  P     +D      +L+ +GPEGGW E  E+DL +  GF+ VTLG R LR+DVAV  LL LA 
Sbjct:   81 RFLFDPSEVDTSGEFPSV--TIAVDDYRTVHAAKVLGVQNGEVVRAGIVGTGLTDEATVTW--------------IPSGKIKKAEPTQNGGPPGPLRLSLRNMIPASDGGAGPRCVSLILACPRPLALRRILPVVSMMGVDRLVLCGASKVPKDYFGSHLFRKEEEITKLLVEGLCQAGDVRLPEVTVARRLKIFLEDDLDDIFPPPERGGPTRVIAHPTRSGISKEKGGK-------------------IEMR----VRDVELYAPSPMGSNDSSHHPSILLAVGPEGGWEEEYEIDLFRKHGFEVVTLGQRTLRTDVAVITLLGLAQ 370          
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: K0SJH0_THAOC (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJH0_THAOC)

HSP 1 Score: 189 bits (481), Expect = 1.370e-51
Identity = 138/363 (38.02%), Postives = 187/363 (51.52%), Query Frame = 3
Query:    3 RIMLEQSE--VIRGEDGGLYATLCAA--DSRTHHVRSVLKVADGEPVRVGVV-DR---------GLI-DDAAISWREPNKLPEDTPPS--DIPGGKK----HRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLER-----------------------ILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
            RIM + +E  V+  +  G  AT+     D RT H+   L + +G+ VR G V DR         GL+ D+A + W    K+ + +P    + PG  K    +    S W D                 +  P+V+L+LALPRPLQL+R                       +LPMV+ LGV+ L+L  A KV K YFGSHLFR P  +R  LVEGLSQSGD  LP+V V++RLK+FLED+LD LFP+ ++ R +AHP R                          +D   R +    R S+I+     D S   +L+ +GPEGGW EP ELD+ Q  GF+ +TLG RVLR+DVAV +LLALA+
Sbjct:   42 RIMFDATELSVVSDQSKGYLATVTLPKDDYRTRHIAKTLNLQNGDCVRAGCVRDRDPSEFDSLGGLMTDEAFVEWLPEGKIKKASPTRNREPPGSLKVLIPNPPKTSLWEDRY-----------GAETDDTPRVSLLLALPRPLQLQRWGLFIQCENSLEFWSLLTNFRIRLLPMVAQLGVENLILTNARKVPKDYFGSHLFRKPSVLRGLLVEGLSQSGDVRLPRVTVSKRLKIFLEDELDELFPRSQYERIIAHPQR--------------------------KDETGRMT----RMSDIKV-NATDGSPRRILLAVGPEGGWEEPYELDMFQKLGFKRITLGTRVLRTDVAVVSLLALAN 362          
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: B7FST2_PHATC (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FST2_PHATC)

HSP 1 Score: 187 bits (475), Expect = 4.070e-51
Identity = 125/325 (38.46%), Postives = 178/325 (54.77%), Query Frame = 3
Query:    3 RIMLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVD----RGLI-DDAAISWREPNKLPEDTPPSD-IPGGKKHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
            R + + SEV   +      TL   D RT H   +L + +G  +R G+V     +GL+ DDA + W    K+ +  P  +  P G  H  +                 LQ   ++  P V+L+LALPRPLQL R+LPM+S +GV+ LVL +A KV K YFGSHL R+P+ +REKL+EGL Q+GD  LP++ + R L+ FL +++D +FPK ++ R +AHP     QR SD              G+L +              ++E P         ++V +GPEGGW EP+ELD  +  GFQ +T+GARVLRSD AV +LL+LAH
Sbjct:   49 RFLFDTSEVKYTDTELPSITLPRDDFRTIHASKILGLRNGNTIRAGLVSCEVHQGLLTDDATVQWIPEGKVKKAEPLGNGNPPGSLHIHLNG---------------LQAPAEQLVPSVSLILALPRPLQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQLHIVRNLRDFLTNEVDEIFPKNQYARAIAHP-----QRTSD------------PMGSLKK------------MKQVEFPV----KSSRLVVAVGPEGGWEEPDELDRFRDCGFQQITMGARVLRSDCAVVSLLSLAH 325          
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: R1F0S1_EMIHU (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F0S1_EMIHU)

HSP 1 Score: 183 bits (464), Expect = 6.520e-50
Identity = 132/322 (40.99%), Postives = 179/322 (55.59%), Query Frame = 3
Query:    3 RIMLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVG--VLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAHA 962
            R++LE SE      G   ATL A D RT HVR VL+  DG  +R GV+DRG  D+A + W              +PGG        +   L L LG   +L    P ER P++ L+LA+PRPLQ  R+LPMV+SLGV T+ +  A+K EK +F SHL R+ Q+ +++L   L+  GDT +P+V+V RRL+  L D L +        R VAHP R      + GE             AL+  A S+ +        I+  EG D +  G  VL+ +GPEGGW EP EL+LL+  GF+ VTLG+R LR+DVAV +LL++AHA
Sbjct:   32 RLLLEPSECA----GDGTATLPADDPRTQHVRVVLRARDGASIRAGVLDRGSSDEATVCW--------------LPGG------ADDPPGLRLALGEPSRLR---PAER-PRIDLLLAMPRPLQFGRLLPMVASLGVGTVYVTAAAKTEKSFFSSHLLREDQAAQQQLRAALA--GDTAVPRVVVDRRLRSLLRDRLPQYGR-----RLVAHPRREGRDARTVGE-------------ALSGLASSQAA--------IDAGEGQDGAGSGPRVLLAVGPEGGWDEPAELELLREHGFEEVTLGSRTLRTDVAVVSLLSVAHA 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR28_ECTSI1.340e-14266.6716S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A6H5KW92_9PHAE4.110e-10553.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRY5_9STRA8.810e-6539.6816S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A1Z5JKH5_FISSO3.500e-5439.5716S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A6V2MGD3_9STRA8.680e-5441.8516S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
A0A1Z5K163_FISSO2.580e-5238.6516S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A7S1BIA7_9STRA3.090e-5241.6416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
K0SJH0_THAOC1.370e-5138.0216S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
B7FST2_PHATC4.070e-5138.4616S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
R1F0S1_EMIHU6.520e-5040.9916S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6contigH-elongata_contig6:39855..43478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score432.2
Seed ortholog evalue2.3e-118
Seed eggNOG ortholog2880.D8LR28
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2S21E@2759,COG1385@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA (guanine-N1-)-methyltransferase, N-terminal
Ec32 orthologEc-06_004590.1
Exons7
Model size1619
Cds size1023
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930972.8836365-UTR-H-elongata_contig6:39854..404421622930972.8836365-UTR-H-elongata_contig6:39854..40442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6 39855..40442 -
1691679646.5699983-UTR-H-elongata_contig6:39854..404421691679646.5699983-UTR-H-elongata_contig6:39854..40442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6 39855..40442 -
1622930973.0063968-UTR-H-elongata_contig6:43470..434781622930973.0063968-UTR-H-elongata_contig6:43470..43478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6 43471..43478 -
1691679646.667649-UTR-H-elongata_contig6:43470..434781691679646.667649-UTR-H-elongata_contig6:43470..43478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6 43471..43478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930972.8969924-CDS-H-elongata_contig6:40442..405831622930972.8969924-CDS-H-elongata_contig6:40442..40583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 40443..40583 -
1691679646.581254-CDS-H-elongata_contig6:40442..405831691679646.581254-CDS-H-elongata_contig6:40442..40583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 40443..40583 -
1622930972.9119086-CDS-H-elongata_contig6:41019..411201622930972.9119086-CDS-H-elongata_contig6:41019..41120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 41020..41120 -
1691679646.5918572-CDS-H-elongata_contig6:41019..411201691679646.5918572-CDS-H-elongata_contig6:41019..41120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 41020..41120 -
1622930972.9253654-CDS-H-elongata_contig6:41335..416001622930972.9253654-CDS-H-elongata_contig6:41335..41600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 41336..41600 -
1691679646.60549-CDS-H-elongata_contig6:41335..416001691679646.60549-CDS-H-elongata_contig6:41335..41600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 41336..41600 -
1622930972.9421842-CDS-H-elongata_contig6:41930..420111622930972.9421842-CDS-H-elongata_contig6:41930..42011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 41931..42011 -
1691679646.6135554-CDS-H-elongata_contig6:41930..420111691679646.6135554-CDS-H-elongata_contig6:41930..42011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 41931..42011 -
1622930972.957228-CDS-H-elongata_contig6:42514..426201622930972.957228-CDS-H-elongata_contig6:42514..42620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 42515..42620 -
1691679646.6218553-CDS-H-elongata_contig6:42514..426201691679646.6218553-CDS-H-elongata_contig6:42514..42620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 42515..42620 -
1622930972.970057-CDS-H-elongata_contig6:42856..430361622930972.970057-CDS-H-elongata_contig6:42856..43036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 42857..43036 -
1691679646.6388586-CDS-H-elongata_contig6:42856..430361691679646.6388586-CDS-H-elongata_contig6:42856..43036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 42857..43036 -
1622930972.9879122-CDS-H-elongata_contig6:43321..434701622930972.9879122-CDS-H-elongata_contig6:43321..43470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 43322..43470 -
1691679646.6503663-CDS-H-elongata_contig6:43321..434701691679646.6503663-CDS-H-elongata_contig6:43321..43470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6 43322..43470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6.13532.1prot_H-elongata_contig6.13532.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6 40443..43470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6.13532.1

>prot_H-elongata_contig6.13532.1 ID=prot_H-elongata_contig6.13532.1|Name=mRNA_H-elongata_contig6.13532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=341bp
MLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGL
IDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDKLL
QQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMY
FGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFP
KERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCG
VRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGA
RVLRSDVAVCALLALAHAWVEERARGFTPPLLTARGGREQ*
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mRNA from alignment at H-elongata_contig6:39855..43478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6.13532.1 ID=mRNA_H-elongata_contig6.13532.1|Name=mRNA_H-elongata_contig6.13532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3624bp|location=Sequence derived from alignment at H-elongata_contig6:39855..43478- (Himanthalia elongata Himel1 dioecious)
ACAGGATCATGCTCGAACAGTCCGAAGTTATTAGAGGCGAAGACGGAGGT CTGTACGCGACGCTTTGTGCGGCTGATAGCCGCACCCATCACGTACGAAG TGTGCTGAAGGTGGCGGATGGAGAGCCCGTTCGCGTCGGAGTAGTTGACA GAGGACTGTGAGTCAGTTGTCCAGATCAGATCAAACTTCCTTACCTCCAT GGGAAAATTGAGAAATGCTGTTATCACAGTCATGTGTCGCACGTCCTATT ACACGCAAATCATGCAGCTCTGCGGCTCGAAATCGTAAGGTAGCTTGGTG AAACCGTACGGAAAGCGGTCAATGACCTCAGTCTCTCGACAAGACGGGGG GCGCTGCTAAACTCGTCTGTCACGAGCTGCTATAGAGACCAAACTCTAGC ATCAACTCCTTGACCTCCTGGCACCGATGAAACCCTCTGCAGAATAGATG ATGCAGCAATCAGTTGGAGAGAGCCGAATAAGCTGCCTGAGGATACCCCG CCTTCGGACATCCCCGGTGGTAAGAAACACCGGAAGGTGGTATCTAACTG GAGAGATTTAGTGCTAAAGCTCGGAACAAGTGATAAGCTTCTGCAGCAAG TGCCCCAGGAGCGACGTCCTAAGTGAGTAATTCGTATTGCAAAAACTACT CGTTGGGCTCCTTAGACTGCCTTCACTACTTTTTATGGCAACACTGGAAA TGTTTAGGCCATGCGCTCGGGGATGTTTACGTCGAGTATTTGGATGCATG GATTTTTATTCCGACGTTGTTGTCAGTACATATCCACCTCAGGCAAAAAC GAAGTTACGAACTCAACATTTCTTGACGCTTCTGCCACCCTGTGCTGGGT TCGAGCAGGGTGGCTCTCATGCTGGCTCTGCCACGACCGCTGCAGTTGGA GCGCATCTTACCGATGGTCTCCAGTCTCGGGGTTGACACCCTGGTATTGT GTCGTGCTAGTAAGGTACGTGCAGATGATAGAACGGCGCTGCGCGCTCAG AAGACGAGATAACCGCGCATTTCGTGTCTTCCACAACCCTTCATTCTAAC AGTCAGCCTCCTTAACTAGAGTTGGATGATGATGGCCCCTACGGAACAAG CCGTCGAACCGGGTCATCGACATCGTCCGACAGGTTTATCGACGCTAGTA AGCTTCACAAGAGCGGTGACGAAGGCCTCGGTACCACAGGAGGGTGCATG CATATCTTGATCTCTTTGCTATGTATAGTCATCACACTTTCAGCAGAGTA AGATCAACCGGATTTGGTTGCCCTCTGCTCGTGGTCAGCTAGACGGAAAA TAAATTTACCCTGTCCCCGTTCAGTTCGCGCCTGATAATTTAGTCTCGCG AGACGGGTTCAGCAGTCCCTTCCCGCGTCAGCATGCTCATTCTCTCAATC CAGGCTGAATCTGGTACGCGAAGGTATTTTCCGACGAACTGAAGTGACGC TCCCGTCGCTCTTCCAGGTAGAAAAGATGTACTTCGGGTCGCACCTGTTT CGCGATCCACAGAGTATGAGGGAGAAGCTGGTAGAGGGCTTGTCGCAGGT AAGCGACATGTAAAAGAGAATGGCTAAAATCGATCGCTGGCATGGCAAAA CTCGTTGCTGGACTGTACCGTAACACCATTCGCGGTGCCGTAGATTTGGA TTATACACTCGAAGCTGAAAACTTCGGAGTTCTTGCCCTCGTCTGATGGA CAAAAACATCCCACCAGAGATATGAAGCTCGTCTCGTCCCATGCACTATA GAATAGGACTCACGAGAAGTCACCACACGTCTATATTTTCGACTTCCCGT TTGTGTAAACCATGAGCACTCCATCACCACGTCCCTTTGCTTACTCTTAC GCGCCAAACGATGAAACGGCTCAAAAAGTCTGGTGACACGGTTTTGCCCA AGGTGATCGTAGCGCGTCGTCTTAAGGTCTTCCTGGAAGACGATCTTGAT AGACTTTTCCCAAAAGAGCGTTGGGTCAGAACGGTGGCTCATCCCACGAG ACTCGAGGCACAAAGACATTCAGACGGGGAAGCGGTTAAAGTTCAAGGAG CGGAGGACGGACAAGCTGGGGCGTTGGCGCGTGACGCTATTAGCAGGCGG TCAATGTGTGGAGTAAGGTTCTCGGAGATTGAGCCCCCCGAGGGTAAGAT GATGCTGGAACGTAAGCAAAGCTGTTCATGTTCCCTCATTTTTCTTGGAG TATGGACGTTACCATTAAGGCACGAATAAGAACGAAACCTCCCCTTTTCC CGTGATTATTGATTGAGGTAGTGTCTTAACGTGCTCAGGTGGCTCATGCC CATAAATTGCACCTTCTACGGTCACTCGACCAAACCACGTTTTTCCGATT CTGTCAAGGTTGTGATCCTTCAGACGTGGGTGTTCTGGTGACGATCGGTC CTGAAGGAGGGTGGGTAGAACCGAACGAGCTTGACCTTTTGCAGTCCTTC GGGTTTCAGGTACGTGGTTCGTCAGATGCCCTCGCCCGTTTCCAGTGGCC ATTTTTTTTTTAATTATCTCTTTCTACTGATGGGTTCGCCAGTGTGCTTT TAATAGTATAGGTTACCATTCCCACTTACTGCACCGCTATACTCATAGAT TGATCCATCCCGCAATACCATGTGGGCCTAAGGGATCAATCCATCTCACT CCTACGCACTTGGTCAACCAATGATTGAACTTTGCTTTCTCTCGTTCGCA CGTTTTCTTTATAATGGCCTTTATAATGATCTCACAAAAAATACTATTAA TAGCGCTACTGGATACGAGTAGGGTATTATTGCTTCCTCGGCGCGCTTTG CCCGTGCGTCACATCTTTACTCTTCCTAAGCCAGCGTGTATTGAGATCTT ATCCCCGTACTAACCTTTTTTCGTTCCGGACCCCACCCCATGCAGGCGGT CACGCTTGGAGCTCGCGTTTTGAGATCAGACGTGGCAGTTTGTGCTCTCT TAGCCCTGGCCCACGCTTGGGTTGAGGAACGCGCCCGTGGATTTACTCCC CCTTTGCTGACAGCGCGCGGTGGACGGGAGCAGTAGCGGTCGTTCCTCGA GGACTCGACCAACGAGCTCTACGGTTGTCCAAGAACGGCTACGGACGAAT TGCACCCTACGATTCGGATCGGATCTAGCGTGGTTCATTGTGTTGGTTAT TGTTATTGTAGTGTGGTGCTAACAATCGTAGCAAACGTTCGGGTGCCGTG GTTCACCCTTCGTCCCATTCGTGATGCACTTGAGATGCTGCTCAAAAGTG CAATCTTTTAAATTGGTCATTTGTTTTGTTCAATATATTACAGTAGGATT TCCTATAATGCCATGAAAGGATGCCATGAAAGAGCGGCGGTCGAGGATAT GTTTCTCCTTATCATTGCAACGGGTGTCATTGAAATATATGAAACATCGT GTGGTGGCCATTTGACACTGGGGAAACTTTCCACGTGCATTACTAATCCA GTGCTTTGAGCAGGTGCGTCGGCAATATACCCATATATTCCAAAGTCGCG CAGCGTGGTTGCTTGTCTATCGGCTTGAAGAGGCTATCCACTCTTATTGA AAGCTATCCAAGGGGTGTGGATAGCAGCGCTCGCCTGTTATTGAAAGATG ACCGCCTACTTAGCTAAAATGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig6:39855..43478-

>mRNA_H-elongata_contig6.13532.1 ID=mRNA_H-elongata_contig6.13532.1|Name=mRNA_H-elongata_contig6.13532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2046bp|location=Sequence derived from alignment at H-elongata_contig6:39855..43478- (Himanthalia elongata Himel1 dioecious)
ATGCTCGAACAGTCCGAAGTTATTAGAGGCGAAGACGGAGGTCTGTACGC
GACGCTTTGTGCGGCTGATAGCCGCACCCATCACGTACGAAGTGTGCTGA
AGGTGGCGGATGGAGAGCCCGTTCGCGTCGGAGTAGTTGACAGAGGACTA
TGCTCGAACAGTCCGAAGTTATTAGAGGCGAAGACGGAGGTCTGTACGCG
ACGCTTTGTGCGGCTGATAGCCGCACCCATCACGTACGAAGTGTGCTGAA
GGTGGCGGATGGAGAGCCCGTTCGCGTCGGAGTAGTTGACAGAGGACTAA
TAGATGATGCAGCAATCAGTTGGAGAGAGCCGAATAAGCTGCCTGAGGAT
ACCCCGCCTTCGGACATCCCCGGTGGTAAGAAACACCGGAAGGTGGTATC
TAACTGGAGAGATTTAGTGCTAAAGCTCGGAACAAGTGATAAGCTTCTGC
AGCAAGTGCCCCAGGAGCGACGTCCTAAAATAGATGATGCAGCAATCAGT
TGGAGAGAGCCGAATAAGCTGCCTGAGGATACCCCGCCTTCGGACATCCC
CGGTGGTAAGAAACACCGGAAGGTGGTATCTAACTGGAGAGATTTAGTGC
TAAAGCTCGGAACAAGTGATAAGCTTCTGCAGCAAGTGCCCCAGGAGCGA
CGTCCTAAGGTGGCTCTCATGCTGGCTCTGCCACGACCGCTGCAGTTGGA
GCGCATCTTACCGATGGTCTCCAGTCTCGGGGTTGACACCCTGGTATTGT
GTCGTGCTAGTAAGGGTGGCTCTCATGCTGGCTCTGCCACGACCGCTGCA
GTTGGAGCGCATCTTACCGATGGTCTCCAGTCTCGGGGTTGACACCCTGG
TATTGTGTCGTGCTAGTAAGGTAGAAAAGATGTACTTCGGGTCGCACCTG
TTTCGCGATCCACAGAGTATGAGGGAGAAGCTGGTAGAGGGCTTGTCGCA
GGTAGAAAAGATGTACTTCGGGTCGCACCTGTTTCGCGATCCACAGAGTA
TGAGGGAGAAGCTGGTAGAGGGCTTGTCGCAGTCTGGTGACACGGTTTTG
CCCAAGGTGATCGTAGCGCGTCGTCTTAAGGTCTTCCTGGAAGACGATCT
TGATAGACTTTTCCCAAAAGAGCGTTGGGTCAGAACGGTGGCTCATCCCA
CGAGACTCGAGGCACAAAGACATTCAGACGGGGAAGCGGTTAAAGTTCAA
GGAGCGGAGGACGGACAAGCTGGGGCGTTGGCGCGTGACGCTATTAGCAG
GCGGTCAATGTGTGGAGTAAGGTTCTCGGAGATTGAGCCCCCCGAGGTCT
GGTGACACGGTTTTGCCCAAGGTGATCGTAGCGCGTCGTCTTAAGGTCTT
CCTGGAAGACGATCTTGATAGACTTTTCCCAAAAGAGCGTTGGGTCAGAA
CGGTGGCTCATCCCACGAGACTCGAGGCACAAAGACATTCAGACGGGGAA
GCGGTTAAAGTTCAAGGAGCGGAGGACGGACAAGCTGGGGCGTTGGCGCG
TGACGCTATTAGCAGGCGGTCAATGTGTGGAGTAAGGTTCTCGGAGATTG
AGCCCCCCGAGGGTTGTGATCCTTCAGACGTGGGTGTTCTGGTGACGATC
GGTCCTGAAGGAGGGTGGGTAGAACCGAACGAGCTTGACCTTTTGCAGTC
CTTCGGGTTTCAGGTTGTGATCCTTCAGACGTGGGTGTTCTGGTGACGAT
CGGTCCTGAAGGAGGGTGGGTAGAACCGAACGAGCTTGACCTTTTGCAGT
CCTTCGGGTTTCAGGCGGTCACGCTTGGAGCTCGCGTTTTGAGATCAGAC
GTGGCAGTTTGTGCTCTCTTAGCCCTGGCCCACGCTTGGGTTGAGGAACG
CGCCCGTGGATTTACTCCCCCTTTGCTGACAGCGCGCGGTGGACGGGAGC
AGTAGGCGGTCACGCTTGGAGCTCGCGTTTTGAGATCAGACGTGGCAGTT
TGTGCTCTCTTAGCCCTGGCCCACGCTTGGGTTGAGGAACGCGCCCGTGG
ATTTACTCCCCCTTTGCTGACAGCGCGCGGTGGACGGGAGCAGTAG
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