prot_H-elongata_contig5993.13527.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5993.13527.1
Unique Nameprot_H-elongata_contig5993.13527.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length230
Homology
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BLAST of mRNA_H-elongata_contig5993.13527.1 vs. uniprot
Match: D7FKT9_ECTSI (Tim44 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT9_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 9.970e-89
Identity = 134/212 (63.21%), Postives = 163/212 (76.89%), Query Frame = 0 
Query:    4 GEVRSSGAIFDPYVYRGEDGGKALPLMMTTQGLKTRWGIMRSHIKSGVCAGIIQKHVPEFHASKFPPVANEVFKNFVEAHRKGDTHALAGLTTEEFYATLKGELKQARKDGGNRYAFRVLGFKKTTHVLQMREHRKKHVSDREGWGQASRTPLQSEREMVTVDASGREVRPEDGKEPMKIDNITIGTFEVFFGDDQKRWRLALLQELGGAPV 215
            GEVRSSG IFDPYVYRG  GGK LP MM+++G++ R GIMRSH+KSGVCAGIIQKHVP+FH SKFPPVAN++FK+F EAHRKGDT ALAGLTTEE YA+LKGE+K ++  G  R AFR++ FK+ T VLQMR  RKKH+S +EGWGQ +   L SER+++ VDA G EV  +  ++     N+T+G FE FFGD   RWRLAL+QE   AP 
Sbjct:   19 GEVRSSGGIFDPYVYRGA-GGKGLPPMMSSEGVRERLGIMRSHLKSGVCAGIIQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSRGAQRAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQVT-CRLCSERQLLVVDAKGNEVEAKADEDATTAQNVTVGVFEAFFGDSAGRWRLALVQEFAEAPA 228
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BLAST of mRNA_H-elongata_contig5993.13527.1 vs. uniprot
Match: A0A835YW25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW25_9STRA)

HSP 1 Score: 140 bits (352), Expect = 6.930e-38
Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 0 
Query:   28 PLMMTTQGLKTRWGIMRSHIKSGVCAGIIQKHVPEFHASKFPPVANEVFKNFVEAHRKGDTHALAGLTTEEFYATLKGEL-KQARKDGGN---RYAFRVLGFKKTTHVLQMREHRKKHVSDREGWGQASRTPLQSEREMVTVDASGREVRPEDGKEPMKIDNITIGTFEVFFGDDQKRWRLALLQELGGAPVHSQRRAVNIT 225
            P + T  GLK R+ + + H+KS     II+KHVP F    FPP+A++VF++F++AHRKGD  +L  L TE  +  +K ++ +  RK G     R AF++L   + T+VLQ+R   +K    + GWGQ +   + S RE++ VD  GREV+P  G   + +++IT+G  E+FF D    WRLA+L E+G       R  V+ T
Sbjct:    5 PPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTS-REILAVDRRGREVQPPPGGNKV-VESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT 204
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BLAST of mRNA_H-elongata_contig5993.13527.1 vs. uniprot
Match: A0A6H5K0Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.640e-18
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 0 
Query:    4 GEVRSSGAIFDPYVYRGEDGGKALPLMMTTQGLKTRWGIMRSHIKSGVCAGIIQKH 59
            GEVRSSG +FDPYVYRG  GGK LP MM+++G+K R GIMR H+KSGVCAGIIQ H
Sbjct:   25 GEVRSSGGVFDPYVYRGA-GGKGLPPMMSSEGVKERLGIMRGHLKSGVCAGIIQVH 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5993.13527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKT9_ECTSI9.970e-8963.21Tim44 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YW25_9STRA6.930e-3839.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K0Z7_9PHAE3.640e-1873.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007379Tim44-like domainPFAMPF04280Tim44coord: 57..205
e-value: 1.6E-7
score: 31.6
NoneNo IPR availableGENE3D3.10.450.240coord: 49..215
e-value: 1.4E-14
score: 56.0
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 51..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5993contigH-elongata_contig5993:4469..7935 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5993.13527.1mRNA_H-elongata_contig5993.13527.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5993 3930..7936 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5993.13527.1 ID=prot_H-elongata_contig5993.13527.1|Name=mRNA_H-elongata_contig5993.13527.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
MLRGEVRSSGAIFDPYVYRGEDGGKALPLMMTTQGLKTRWGIMRSHIKSG
VCAGIIQKHVPEFHASKFPPVANEVFKNFVEAHRKGDTHALAGLTTEEFY
ATLKGELKQARKDGGNRYAFRVLGFKKTTHVLQMREHRKKHVSDREGWGQ
ASRTPLQSEREMVTVDASGREVRPEDGKEPMKIDNITIGTFEVFFGDDQK
RWRLALLQELGGAPVHSQRRAVNITDSKQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007379Tim44-like_dom
IPR032710NTF2-like_dom_sf