mRNA_H-elongata_contig59899.13521.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59899.13521.1
Unique NamemRNA_H-elongata_contig59899.13521.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59899.13521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59899contigH-elongata_contig59899:1036..1546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size494
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59899.13521.1prot_H-elongata_contig59899.13521.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59899 1042..1310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.1395338-UTR-H-elongata_contig59899:1035..10411622930970.1395338-UTR-H-elongata_contig59899:1035..1041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59899 1036..1041 +
1691679645.153616-UTR-H-elongata_contig59899:1035..10411691679645.153616-UTR-H-elongata_contig59899:1035..1041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59899 1036..1041 +
1622930970.2005494-UTR-H-elongata_contig59899:1310..15461622930970.2005494-UTR-H-elongata_contig59899:1310..1546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59899 1311..1546 +
1691679645.1838012-UTR-H-elongata_contig59899:1310..15461691679645.1838012-UTR-H-elongata_contig59899:1310..1546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59899 1311..1546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.1562335-CDS-H-elongata_contig59899:1041..12001622930970.1562335-CDS-H-elongata_contig59899:1041..1200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59899 1042..1200 +
1691679645.1635122-CDS-H-elongata_contig59899:1041..12001691679645.1635122-CDS-H-elongata_contig59899:1041..1200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59899 1042..1200 +
1622930970.1790166-CDS-H-elongata_contig59899:1217..13101622930970.1790166-CDS-H-elongata_contig59899:1217..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59899 1218..1310 +
1691679645.1750526-CDS-H-elongata_contig59899:1217..13101691679645.1750526-CDS-H-elongata_contig59899:1217..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59899 1218..1310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59899.13521.1

>prot_H-elongata_contig59899.13521.1 ID=prot_H-elongata_contig59899.13521.1|Name=mRNA_H-elongata_contig59899.13521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MAPCGQPRKFSTLLCFSQEEKGSISSNPTETSFSVKCPTPFPSAENIRIN
NGNQEQGIRNTTFFSVYTSLCKTHSTMATHPTP*
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mRNA from alignment at H-elongata_contig59899:1036..1546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59899.13521.1 ID=mRNA_H-elongata_contig59899.13521.1|Name=mRNA_H-elongata_contig59899.13521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=511bp|location=Sequence derived from alignment at H-elongata_contig59899:1036..1546+ (Himanthalia elongata Himel1 dioecious)
GCAGATATGGCGCCATGCGGCCAACCAAGAAAATTCTCGACGCTACTGTG
TTTTAGCCAAGAGGAGAAGGGTTCTATTTCCAGCAACCCCACGGAAACAT
CCTTTTCTGTTAAGTGCCCTACACCCTTCCCCAGTGCGGAGAATATCCGT
ATCAATAACGGGAACGCGAGCAGCGTGGCGAGCAAGAACAAGGAATAAGA
AATACTACGTTTTTTAGCGTCTACACATCTTTATGCAAAACACACAGCAC
AATGGCAACACATCCCACACCGTGAACCTTATATATATATATATAACTAT
ATAAGCAGCACGGGTAATTGACCAAATAACTAAAGGTGTCGATAATCACA
ACACCGGCACCAACCGTATGATATTTAGTATAACTACACCACTGGGGCAT
GATGTCGAAGCGTGTTTACTGCCTCTCCGGGCGCCTGCCTTAAACAGCTT
AGCCCCCGCTAAAAAAAAAACTAAATCCCTATGAATAAGGAGTCTTCCTG
CTGCATGTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig59899:1036..1546+

>mRNA_H-elongata_contig59899.13521.1 ID=mRNA_H-elongata_contig59899.13521.1|Name=mRNA_H-elongata_contig59899.13521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig59899:1036..1546+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCCATGCGGCCAACCAAGAAAATTCTCGACGCTACTGTGTTTTAG
CCAAGAGGAGAAGGGTTCTATTTCCAGCAACCCCACGGAAACATCCTTTT
CTGTTAAGTGCCCTACACCCTTCCCCAGTGCGGAGAATATCCGTATCAAT
AACGGGAACATGGCGCCATGCGGCCAACCAAGAAAATTCTCGACGCTACT
GTGTTTTAGCCAAGAGGAGAAGGGTTCTATTTCCAGCAACCCCACGGAAA
CATCCTTTTCTGTTAAGTGCCCTACACCCTTCCCCAGTGCGGAGAATATC
CGTATCAATAACGGGAACCAAGAACAAGGAATAAGAAATACTACGTTTTT
TAGCGTCTACACATCTTTATGCAAAACACACAGCACAATGGCAACACATC
CCACACCGTGACAAGAACAAGGAATAAGAAATACTACGTTTTTTAGCGTC
TACACATCTTTATGCAAAACACACAGCACAATGGCAACACATCCCACACC
GTGA
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