mRNA_H-elongata_contig59865.13514.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59865.13514.1
Unique NamemRNA_H-elongata_contig59865.13514.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.370e-41
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:    1 MKQEMNRASEDHEHAMARFLQLKRNSEEGVTQARTAEVALAKKRFEMARFDLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSRE 324
            MKQEMNR+ ED+EH+MARFLQLKRNSEEGVTQAR+AEVAL+KKRFEMARFD V HL+QLET+KKHEVV RTC+AL+A+L LF +C  LVASTE  +REL+ AL LSR+
Sbjct:  118 MKQEMNRSCEDYEHSMARFLQLKRNSEEGVTQARSAEVALSKKRFEMARFDFVHHLSQLETKKKHEVVGRTCTALHAFLALFQRCNGLVASTEQRLRELECALTLSRQ 225
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: D7FVG0_ECTSI (Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG0_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.380e-41
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:    1 MKQEMNRASEDHEHAMARFLQLKRNSEEGVTQARTAEVALAKKRFEMARFDLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSRE 324
            MKQEMNR+ ED+EH+MARFLQLKRNSEEGVTQAR AEVAL+KKRFEMARFDLV+HL+ LET+KKHEVV RTC+AL+A+L LF +C  LVASTE  +REL+ AL LSR+
Sbjct:    1 MKQEMNRSCEDYEHSMARFLQLKRNSEEGVTQARAAEVALSKKRFEMARFDLVRHLSLLETKKKHEVVGRTCTALHAFLALFQRCNGLVASTEQRLRELECALTLSRQ 108
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.150e-25
Identity = 67/145 (46.21%), Postives = 88/145 (60.69%), Query Frame = 1 
Query:    1 MKQEMNRASEDHEHAMARFLQLKRNSEEGVTQARTAE-------VALAKKRFEMARFDLVQHLNQLETRKKHEV------------------------------VDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSRE 324
            MKQE++RASED+E  + + LQLKRNSE+   Q R+A        VA  ++RFE++RFDLV HLNQLET+KK ++                              V+R CSALYA+L  FHQC+ LVA+ EP MR+LQHAL L+R+
Sbjct:  462 MKQEVSRASEDYEAHLFKLLQLKRNSEDAQFQVRSAXXXXXXXXVAATRRRFELSRFDLVHHLNQLETKKKFQLAVGQRLARQNKKRGTLSTGDAQRLAFAVDEVERVCSALYAFLGYFHQCHTLVATVEPSMRDLQHALHLARK 606
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: A0A7R9YAC1_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAC1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.250e-21
Identity = 50/108 (46.30%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:    1 MKQEMNRASEDHEHAMARFLQLKRNSEEGVTQARTAEVALAKKRFEMARFDLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSRE 324
            MK E  R+ E+HE  + + LQL+ +++  V   R    + + KR E+ARFDLV  LNQLE +KK ++V+R C+ LYA L  FHQC++++A+ EP MR+LQ AL+L+R+
Sbjct:  277 MKVESQRSLEEHEQDLGKLLQLRNDADAAVVSQRKQAASASYKRHELARFDLVHELNQLEMKKKFQLVERVCNGLYAELGYFHQCHIVMANMEPRMRDLQLALQLARK 384
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: A0A7S1U8B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8B4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.710e-20
Identity = 46/98 (46.94%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:   31 DHEHAMARFLQLKRNSEEGVTQARTAEVALAKKRFEMARFDLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSRE 324
            +HE  +AR LQL  +++  +  AR    + + KR E+ARFDLV  LNQLE RKK ++ +R C+ LYA L  FHQC++++A+ EP MR++QHAL ++R+
Sbjct:  223 EHETNLARLLQLHNDADADMVAARQDAASASFKRHELARFDLVHELNQLEMRKKFQIAERVCNGLYADLGFFHQCHIVMATLEPSMRDMQHALSVARK 320
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: A0A4D9CVE4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVE4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.740e-16
Identity = 50/108 (46.30%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 MKQEMNRASEDHEHAMARFLQ-LKRNSEEGVTQARTAEVALAKKRFEMARFDLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSR 321
            +K  + RA ED+   + R LQ L+R ++  V +ART ++   ++R+E+ R DLV  LNQLET+KK ++V+R   ALYAYL  FHQ +  +A+ EP MR+LQ  L LSR
Sbjct:  447 LKDAVGRAYEDYVAHLQRHLQQLRRGTDPEVLRARTQDLIGVRRRYELGRIDLVNTLNQLETKKKFQLVERVLCALYAYLGYFHQGHEALAAIEPSMRDLQCQLSLSR 554
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: A0A0P1ANE9_PLAHL (Arf-gap with coiled-ank repeat and ph domain-containing protein 2-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANE9_PLAHL)

HSP 1 Score: 67.8 bits (164), Expect = 5.930e-11
Identity = 33/72 (45.83%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:  109 EVALAKKRFEMARFDLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSRE 324
            EV +A++RFE+ARFDLV+++N++++ KK+ +V+   S +YA L  FH C+ LV S EP +R+ Q  L++SR+
Sbjct:  362 EVLIARRRFELARFDLVRYMNRIDSMKKYVLVECFNSIMYAQLGHFHACHELVKSIEPSLRKRQEMLQVSRK 433
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: A0A662XKE9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XKE9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.130e-11
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  109 EVALAKKRFEMARFDLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSRE 324
            EV  A++RFE+ARFDLV++LN+L+  KK  +V+   S LYA L  FH C+ LV + EP +RE Q  +++SR+
Sbjct:  427 EVVQARRRFELARFDLVRYLNRLDCMKKFVLVECFNSTLYALLGHFHACHELVKAVEPALRERQEMMQVSRQ 498
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: D0N718_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N718_PHYIT)

HSP 1 Score: 66.6 bits (161), Expect = 1.530e-10
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  109 EVALAKKRFEMARFDLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSRE 324
            +V  A++RFE+ARFDLV+H+N+++  KK  +V+   S LYA L  FH C+ L+ S EP +R  Q  ++LSR+
Sbjct:  704 DVVTARRRFELARFDLVRHMNRVDCMKKFVLVECFNSILYAQLGHFHACHELIKSVEPSLRRRQEMMQLSRK 775
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BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Match: A0A5D6XPU4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPU4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.130e-10
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:   91 TQARTAEVALAKKRFEMARFDLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQHALKLSR 321
            T++   EVA A+ +FE+ARFDLV++LN+L+ +KK  +V+   + LYA+L  FH C  LV S EP +R+ Q  L+L++
Sbjct:  366 TKSLEREVAQARLKFELARFDLVRYLNRLDCQKKFLLVECFNAMLYAFLGHFHACLELVKSVEPALRQRQELLQLAK 442
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59865.13514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L2J8_9PHAE1.370e-4175.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVG0_ECTSI1.380e-4175.93Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpu... [more]
A0A835ZCL2_9STRA2.150e-2546.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YAC1_9STRA3.250e-2146.30Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U8B4_9STRA3.710e-2046.94Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A4D9CVE4_9STRA1.740e-1646.30Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0P1ANE9_PLAHL5.930e-1145.83Arf-gap with coiled-ank repeat and ph domain-conta... [more]
A0A662XKE9_9STRA8.130e-1148.61Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
D0N718_PHYIT1.530e-1045.83Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A5D6XPU4_9STRA7.130e-1045.45Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59865contigH-elongata_contig59865:1671..3040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue7.7e-36
Seed eggNOG ortholog2880.D7FVG0
Preferred nameAGD4
KEGG koko:K12489
KEGG Pathwayko04144,map04144
GOsGO:0003002,GO:0003674,GO:0005096,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007275,GO:0007389,GO:0008047,GO:0008150,GO:0008289,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009888,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010051,GO:0010087,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030234,GO:0030695,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035091,GO:0042221,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050790,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0097708,GO:0098657,GO:0098772,GO:0099402,GO:1905392
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size324
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59865.13514.1prot_H-elongata_contig59865.13514.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59865 1671..3040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930969.6432686-CDS-H-elongata_contig59865:1670..17661622930969.6432686-CDS-H-elongata_contig59865:1670..1766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59865 1671..1766 +
1691679644.9292688-CDS-H-elongata_contig59865:1670..17661691679644.9292688-CDS-H-elongata_contig59865:1670..1766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59865 1671..1766 +
1622930969.6558833-CDS-H-elongata_contig59865:2216..23291622930969.6558833-CDS-H-elongata_contig59865:2216..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59865 2217..2329 +
1691679644.942403-CDS-H-elongata_contig59865:2216..23291691679644.942403-CDS-H-elongata_contig59865:2216..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59865 2217..2329 +
1622930969.6726565-CDS-H-elongata_contig59865:2925..30401622930969.6726565-CDS-H-elongata_contig59865:2925..3040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59865 2926..3040 +
1691679644.954382-CDS-H-elongata_contig59865:2925..30401691679644.954382-CDS-H-elongata_contig59865:2925..3040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59865 2926..3040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59865.13514.1

>prot_H-elongata_contig59865.13514.1 ID=prot_H-elongata_contig59865.13514.1|Name=mRNA_H-elongata_contig59865.13514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MKQEMNRASEDHEHAMARFLQLKRNSEEGVTQARTAEVALAKKRFEMARF
DLVQHLNQLETRKKHEVVDRTCSALYAYLKLFHQCYMLVASTEPHMRELQ
HALKLSRE
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mRNA from alignment at H-elongata_contig59865:1671..3040+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59865.13514.1 ID=mRNA_H-elongata_contig59865.13514.1|Name=mRNA_H-elongata_contig59865.13514.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1370bp|location=Sequence derived from alignment at H-elongata_contig59865:1671..3040+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCAAGAGATGAATCGTGCGTCCGAGGACCACGAGCACGCCATGGC
ACGCTTCCTGCAGCTCAAACGTAACTCGGAAGAGGGCGTGACGCAGGTGG
GCAATCGCGATCTCTTATATCTACATGAGACTCGATGAGACGGTGTGACA
ATGCCCAGGTCGCCTGGCCGTTCCCGTCCTCATCGCCGTTTTCCATTGGG
CGTTCCATATGCGTTGCGTCGTCATTTTTTTTTTAAGTTATGCTTGGGAA
GAGGCCCAGGTGGTGTGGCGGGGGTTGGAGGGAGTTCCACACCCCGCCTC
GCAATTCTAAAAGAAGGGAAAGGGGCTCAAAAGAAAGGTGACTTCGTCCC
GGGGGGAGGAAACATAGGTTATGGCTTGTTCAGACTACGTCTCCGACTCG
AAGCACGCCTTGGCTGTTGACAGGCTCTCTCGATGCCGAAAAGGACTGTG
CTCGCCCTCGGCATTGATATCAGCCGTCCCCGTCATTGTGACATCTCCTT
TTCCGTCTGGGGTTTTCGGTGTTGGCGTTACGTTTTTCCTCAAAAGGCGA
GGACGGCGGAGGTTGCCTTGGCGAAGAAAAGGTTCGAGATGGCGCGTTTT
GACCTTGTGCAGCACCTAAATCAGCTCGAGACGAGGAAGAAACACGAAGT
GGTGGACAGGTGGGCATAAGGCTTTGATCGCAGGCTGTGTATTAGAGCCT
AAACTATATCTCTCAATGTATATATATATATATACATGCTATTTCGTCGT
GTGGTTTTGTTGGTAAATACTTAGGCGTGTCTGGGAGAGGGAGGCTTCGT
ATGATGTGGTTTTGAAGAGTGAATGAAAACCTTTTTCGTTTTTTTTGTTT
TTTTTTGCAAAAAAAATGCCTCGAAATAAAACGAGTTTTCCCCCATTTAA
GGGGGGTTCTAAATGTTTTTTCTTTTCTTTTCTTTTCTCCCCACCGGTAC
GTACGGGGACAAGACAAATCGATATCGCCATTACAGAGTAAAAAGGGTGA
TAGCCTCACACCCCCGGCCTCCCCCTTGTTCCCCTCCCCGAGGACTACTT
TCCAAGAACCGCCCCAACCATAACGGTTTGTGTGGCGCGCGTGTCTTTTT
TTATGCGGATGTGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCGC
TAAAGCAATCCGGCTCTGTGATGCTAGTAATTCTAGGGTACTTGAATTGA
TCCTCCCAATTTATGTGCGTGTGTCCATGTTTGTCTTTCCTCTGTGGGTT
TCCAGGACCTGCTCGGCGTTGTACGCCTACCTAAAGCTCTTCCACCAGTG
CTACATGCTGGTGGCCTCTACGGAGCCACACATGAGAGAGCTGCAACACG
CCCTCAAGCTCTCCAGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig59865:1671..3040+

>mRNA_H-elongata_contig59865.13514.1 ID=mRNA_H-elongata_contig59865.13514.1|Name=mRNA_H-elongata_contig59865.13514.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig59865:1671..3040+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCAAGAGATGAATCGTGCGTCCGAGGACCACGAGCACGCCATGGC
ACGCTTCCTGCAGCTCAAACGTAACTCGGAAGAGGGCGTGACGCAGATGA
AGCAAGAGATGAATCGTGCGTCCGAGGACCACGAGCACGCCATGGCACGC
TTCCTGCAGCTCAAACGTAACTCGGAAGAGGGCGTGACGCAGGCGAGGAC
GGCGGAGGTTGCCTTGGCGAAGAAAAGGTTCGAGATGGCGCGTTTTGACC
TTGTGCAGCACCTAAATCAGCTCGAGACGAGGAAGAAACACGAAGTGGTG
GACAGGCGAGGACGGCGGAGGTTGCCTTGGCGAAGAAAAGGTTCGAGATG
GCGCGTTTTGACCTTGTGCAGCACCTAAATCAGCTCGAGACGAGGAAGAA
ACACGAAGTGGTGGACAGGACCTGCTCGGCGTTGTACGCCTACCTAAAGC
TCTTCCACCAGTGCTACATGCTGGTGGCCTCTACGGAGCCACACATGAGA
GAGCTGCAACACGCCCTCAAGCTCTCCAGGGAGGACCTGCTCGGCGTTGT
ACGCCTACCTAAAGCTCTTCCACCAGTGCTACATGCTGGTGGCCTCTACG
GAGCCACACATGAGAGAGCTGCAACACGCCCTCAAGCTCTCCAGGGAG
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