mRNA_H-elongata_contig11727.1351.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11727.1351.1
Unique NamemRNA_H-elongata_contig11727.1351.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11727.1351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11727contigH-elongata_contig11727:5798..6334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11727.1351.1prot_H-elongata_contig11727.1351.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11727 5801..6265 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.218809-UTR-H-elongata_contig11727:5797..58001622929683.218809-UTR-H-elongata_contig11727:5797..5800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11727 5798..5800 +
1691679117.9439466-UTR-H-elongata_contig11727:5797..58001691679117.9439466-UTR-H-elongata_contig11727:5797..5800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11727 5798..5800 +
1622929683.251409-UTR-H-elongata_contig11727:6265..63341622929683.251409-UTR-H-elongata_contig11727:6265..6334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11727 6266..6334 +
1691679117.958583-UTR-H-elongata_contig11727:6265..63341691679117.958583-UTR-H-elongata_contig11727:6265..6334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11727 6266..6334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.233925-CDS-H-elongata_contig11727:5800..62651622929683.233925-CDS-H-elongata_contig11727:5800..6265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11727 5801..6265 +
1691679117.9512322-CDS-H-elongata_contig11727:5800..62651691679117.9512322-CDS-H-elongata_contig11727:5800..6265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11727 5801..6265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11727.1351.1

>prot_H-elongata_contig11727.1351.1 ID=prot_H-elongata_contig11727.1351.1|Name=mRNA_H-elongata_contig11727.1351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
MVNVTSKTCADDGCFLNPSFGKAGSRNILYCAEHALEGMVNVNMKLCASK
GCNKWPSYGVNGSMKREYCGKHALEGMVNIRYKKCADDGCSRLSRFGVAG
STERDYCSAHALEGMVLIVPRKWKRSRKLGSEAPVLTSSDVDFVKMEVAV
TMSK*
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mRNA from alignment at H-elongata_contig11727:5798..6334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11727.1351.1 ID=mRNA_H-elongata_contig11727.1351.1|Name=mRNA_H-elongata_contig11727.1351.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig11727:5798..6334+ (Himanthalia elongata Himel1 dioecious)
GGAATGGTCAATGTTACGAGCAAAACATGTGCGGATGATGGATGTTTTCT
GAACCCGAGTTTTGGGAAAGCCGGCAGTAGAAACATCTTATACTGCGCCG
AGCATGCTCTGGAGGGAATGGTCAATGTCAACATGAAGTTATGTGCTAGC
AAGGGATGCAATAAATGGCCGAGCTACGGGGTAAATGGCAGCATGAAGCG
TGAGTACTGTGGTAAACATGCCTTGGAGGGAATGGTTAACATTCGTTACA
AGAAATGTGCGGACGATGGTTGCTCTAGGCTTTCGAGGTTTGGGGTAGCC
GGCAGTACTGAGCGAGATTACTGTTCTGCCCATGCCTTAGAGGGCATGGT
GTTAATAGTACCTCGAAAATGGAAAAGAAGCAGAAAATTGGGGTCAGAGG
CCCCTGTGCTGACATCATCAGATGTTGACTTTGTAAAGATGGAGGTAGCA
GTAACTATGTCGAAGTAGGTAAAACTGTTGCGGGTAATCGTTCCAGAAAA
TGTAAAGGCTAATGAGGCCAGGGCCACTACAGTTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig11727:5798..6334+

>mRNA_H-elongata_contig11727.1351.1 ID=mRNA_H-elongata_contig11727.1351.1|Name=mRNA_H-elongata_contig11727.1351.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig11727:5798..6334+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAATGTTACGAGCAAAACATGTGCGGATGATGGATGTTTTCTGAA
CCCGAGTTTTGGGAAAGCCGGCAGTAGAAACATCTTATACTGCGCCGAGC
ATGCTCTGGAGGGAATGGTCAATGTCAACATGAAGTTATGTGCTAGCAAG
GGATGCAATAAATGGCCGAGCTACGGGGTAAATGGCAGCATGAAGCGTGA
GTACTGTGGTAAACATGCCTTGGAGGGAATGGTTAACATTCGTTACAAGA
AATGTGCGGACGATGGTTGCTCTAGGCTTTCGAGGTTTGGGGTAGCCGGC
AGTACTGAGCGAGATTACTGTTCTGCCCATGCCTTAGAGGGCATGGTGTT
AATAGTACCTCGAAAATGGAAAAGAAGCAGAAAATTGGGGTCAGAGGCCC
CTGTGCTGACATCATCAGATGTTGACTTTGTAAAGATGGAGGTAGCAGTA
ACTATGTCGAAGTAGATGGTCAATGTTACGAGCAAAACATGTGCGGATGA
TGGATGTTTTCTGAACCCGAGTTTTGGGAAAGCCGGCAGTAGAAACATCT
TATACTGCGCCGAGCATGCTCTGGAGGGAATGGTCAATGTCAACATGAAG
TTATGTGCTAGCAAGGGATGCAATAAATGGCCGAGCTACGGGGTAAATGG
CAGCATGAAGCGTGAGTACTGTGGTAAACATGCCTTGGAGGGAATGGTTA
ACATTCGTTACAAGAAATGTGCGGACGATGGTTGCTCTAGGCTTTCGAGG
TTTGGGGTAGCCGGCAGTACTGAGCGAGATTACTGTTCTGCCCATGCCTT
AGAGGGCATGGTGTTAATAGTACCTCGAAAATGGAAAAGAAGCAGAAAAT
TGGGGTCAGAGGCCCCTGTGCTGACATCATCAGATGTTGACTTTGTAAAG
ATGGAGGTAGCAGTAACTATGTCGAAGTAG
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