mRNA_H-elongata_contig59856.13509.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: A0A6H5L6I6_9PHAE (HSP40 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I6_9PHAE) HSP 1 Score: 198 bits (503), Expect = 2.200e-62 Identity = 102/130 (78.46%), Postives = 113/130 (86.92%), Query Frame = 1
Query: 10 VALDVPRNASPADIKKAYRKQALAWHPDKNVRVGNEAEARVRFQELQHAYAVLSDPHERRWYDDHRDEILNPERYAGGDGNGDFDDEEGSGRTVNLTKFFSAAAFSGFGDDGTGFYQTYERAFREVWDSE 399
+AL VPR+ASP DIKKAYRKQAL WHPDKNV GNEAEA+VRFQELQHAYAVL++ HER+WYDDHRDEILNP RY +G+GD DD G GRTVN+T FFSAAAFSGFGDD +GFYQTY RAFREVWD+E
Sbjct: 6 LALGVPRDASPPDIKKAYRKQALVWHPDKNV--GNEAEAQVRFQELQHAYAVLNNVHERKWYDDHRDEILNPARY---EGDGDSDDGAG-GRTVNVTPFFSAAAFSGFGDDESGFYQTYTRAFREVWDAE 129
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: D7FRS0_ECTSI (DnaJ homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS0_ECTSI) HSP 1 Score: 199 bits (507), Expect = 2.530e-61 Identity = 103/133 (77.44%), Postives = 113/133 (84.96%), Query Frame = 1
Query: 1 CAKVALDVPRNASPADIKKAYRKQALAWHPDKNVRVGNEAEARVRFQELQHAYAVLSDPHERRWYDDHRDEILNPERYAGGDGNGDFDDEEGSGRTVNLTKFFSAAAFSGFGDDGTGFYQTYERAFREVWDSE 399
C +AL VPR+ASP DIKKAYRKQAL WHPDKNV GNEAEA+VRFQELQHAYAVLS+ HER+WYDDHRDEILNP RY +G+GD DD G GRTVN+T FFSAA FSGFGDD +GFYQTY RAFREVWD+E
Sbjct: 15 CLYLALGVPRDASPPDIKKAYRKQALVWHPDKNV--GNEAEAQVRFQELQHAYAVLSNAHERKWYDDHRDEILNPARY---EGDGDSDDGAG-GRTVNVTPFFSAATFSGFGDDESGFYQTYTRAFREVWDAE 141
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: D0MYG9_PHYIT (J domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0MYG9_PHYIT) HSP 1 Score: 119 bits (298), Expect = 3.530e-32 Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query: 16 LDVPRNASPADIKKAYRKQALAWHPDKNVRVG-NEAEARVRFQELQHAYAVLSDPHERRWYDDHRDEILNPERYAGGDGNGDFDDEEGSGRTVNLTKFFSAAAFSGFGDDGTGFYQTYERAFREV 387
L V R+AS A+IKKA+R +AL WHPDK+ + G + EA +FQ +Q+AY VLSDPHE++WYD+HR++IL GGDGN D DDE+ +NL ++FSA+ +SGFG D FY Y F +V
Sbjct: 8 LAVARDASAAEIKKAFRLKALRWHPDKHQQNGISSEEATEQFQTIQNAYEVLSDPHEKKWYDEHREQIL-----RGGDGNEDGDDED----ELNLFRYFSASVYSGFGSDAKSFYFVYGELFAKV 123
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: A0A835YKT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKT5_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.800e-30 Identity = 64/128 (50.00%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 16 LDVPRNASPADIKKAYRKQALAWHPDKNVRVGNEAEARVRFQELQHAYAVLSDPHERRWYDDHRDEILNPERYAGGDGNGDFDDEEGSGRTVNLTKFFSAAAFSGFGDDGTGFYQTYERAFREVWDSE 399
L+V R A+ +++KKAYRK AL WHPDKN N EA + FQE+QHAYAVLSDP+ER+WYDDH+DEIL G D + D D + N+ +FS++A+SG+GDD GF Y AF ++ +E
Sbjct: 18 LEVARTATDSELKKAYRKAALRWHPDKNA---NSEEATIMFQEIQHAYAVLSDPNERKWYDDHKDEIL-----RGADSDEDHD------KKPNIFPYFSSSAYSGYGDDENGFCAVYAAAFEAIFSAE 131
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: A0A5D6XP08_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP08_9STRA) HSP 1 Score: 122 bits (305), Expect = 5.480e-30 Identity = 63/125 (50.40%), Postives = 82/125 (65.60%), Query Frame = 1
Query: 16 LDVPRNASPADIKKAYRKQALAWHPDKNVRVGNEAE-ARVRFQELQHAYAVLSDPHERRWYDDHRDEILNPERYAGGDGNGDFDDEEGSGRTVNLTKFFSAAAFSGFGDDGTGFYQTYERAFREV 387
L V R+ASP D+KKA+ QAL WHPDK+ + AE A +RFQE+Q AY VLSDPHER+WYDDHR++IL GD +G D+E G +NL ++FS +SGFG+D FY Y F+ +
Sbjct: 8 LAVERDASPKDVKKAFHLQALRWHPDKHQKNNISAEEATLRFQEIQSAYEVLSDPHERKWYDDHREQILR------GDADGADGDDEDGGDGINLFRYFSTGVYSGFGNDEKSFYSVYGDLFKRI 126
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: A0A1Y1I4W4_KLENI (DnaJ heat shock family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I4W4_KLENI) HSP 1 Score: 119 bits (297), Expect = 1.550e-28 Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 13 ALDVPRNASPADIKKAYRKQALAWHPDKNVRVGNEAEARVRFQELQHAYAVLSDPHERRWYDDHRDEILN--PERYAGGDGNGDFDDEEGSGRTVNLTKFFSAAAFSGFGDDGTGFYQTYERAFREV 387
AL+V R+ASP +++ AYR+ AL WHPDKN G + EA VRF+E+Q+AY VLSD +ER WYD HR+EIL YAG + G EEG +NL +FS +AFSG+GD G GFY Y + F E+
Sbjct: 8 ALEVARDASPDELRVAYRRLALVWHPDKNA--GRQEEATVRFKEIQNAYEVLSDKNERAWYDAHREEILRGGSTHYAGAE-TGAPQAEEG----INLWAYFSTSAFSGYGDTGQGFYSVYGKVFDEI 127
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: K3WQC1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQC1_GLOUD) HSP 1 Score: 117 bits (294), Expect = 1.760e-28 Identity = 60/127 (47.24%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 16 LDVPRNASPADIKKAYRKQALAWHPDKNVRVG-NEAEARVRFQELQHAYAVLSDPHERRWYDDHRDEILNPERYAGGDGNGDFDDEEGSGRTVNLTKFFSAAAFSGFGDDGTGFYQTYERAFREVWD 393
L + R+A+ +IKK + QAL WHPDK+ + + EA +RFQE+Q AY VLSD HER+WYD+HRD+IL GD NGD DD++ G +NL K+FS + ++GFG D FY Y F+++ D
Sbjct: 8 LGIERDATAKEIKKGFHLQALRWHPDKHQKNNISPDEATLRFQEIQSAYEVLSDAHERKWYDEHRDQILR------GDANGDADDDDEGGDNLNLFKYFSPSVYAGFGTDDKSFYAVYGSLFKKIDD 128
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: A0A6B2L3F8_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L3F8_9EUKA) HSP 1 Score: 117 bits (293), Expect = 1.950e-28 Identity = 65/124 (52.42%), Postives = 84/124 (67.74%), Query Frame = 1
Query: 16 LDVPRNASPADIKKAYRKQALAWHPDKNVRVGNEAEARVRFQELQHAYAVLSDPHERRWYDDHRDEILNPERYAGGDGNGDFDDEEGSGRTVNLTKFFSAAAFSGFGDDGTGFYQTYERAFREV 387
L++ R A+ ++IK Y K A WHPDKN+ GNEAEA +RF+E+Q AY VLSDP ER WYD HR++IL+ GGDG D E SG +NL FFS ++FSGFGD+ GF++ YE FR +
Sbjct: 8 LEIERTAASSEIKSQYYKLARVWHPDKNL--GNEAEAEIRFKEIQQAYEVLSDPQERAWYDSHREQILH-----GGDGA----DGEFSG--LNLWPFFSKSSFSGFGDNEGGFFRVYETVFRTL 118
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: A0A833TGN6_PHYIN (Zinc-finger double-stranded RNA-binding n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TGN6_PHYIN) HSP 1 Score: 118 bits (296), Expect = 2.370e-28 Identity = 62/125 (49.60%), Postives = 86/125 (68.80%), Query Frame = 1
Query: 16 LDVPRNASPADIKKAYRKQALAWHPDKNVRVG-NEAEARVRFQELQHAYAVLSDPHERRWYDDHRDEILNPERYAGGDGNGDFDDEEGSGRTVNLTKFFSAAAFSGFGDDGTGFYQTYERAFREV 387
L V R+AS A+IKKA+R +AL WHPDK+ + G + EA +FQ +Q+AY VLSDPHE++WYD+HR+++L GGDGN D DDE+ +NL ++FSA+ +SGFG D FY Y F ++
Sbjct: 604 LAVARDASAAEIKKAFRLKALRWHPDKHQQNGISSEEATEQFQTIQNAYEVLSDPHEKKWYDEHREQVL-----RGGDGNEDGDDED----ELNLFRYFSASVYSGFGSDAKSFYFVYGELFAKI 719
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Match: A0A4P9Z281_9FUNG (J domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z281_9FUNG) HSP 1 Score: 115 bits (288), Expect = 3.480e-28 Identity = 66/125 (52.80%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 16 LDVPRNASPADIKKAYRKQALAWHPDKNVRVGNEAEARVRFQELQHAYAVLSDPHERRWYDDHRDEILNPERYAGGDGNGDFDDEEGSGRTVN-LTKFFSAAAFSGFGDDGTGFYQTYERAFREV 387
L V R A+ A++KKAYRKQAL WHPDKN N EA F +QHAY VLSDPHER WYD HRDEIL + GD GD SG T + L +FFS ++GF DDG GFY Y F ++
Sbjct: 35 LGVERTATDAELKKAYRKQALVWHPDKNY--DNIEEATRIFALIQHAYEVLSDPHERAWYDGHRDEILREDSDYAGDA-GDRGYSTVSGHTPDSLMRFFSPDCYAGFNDDGKGFYTVYRELFAQL 156 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59856.13509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59856.13509.1 >prot_H-elongata_contig59856.13509.1 ID=prot_H-elongata_contig59856.13509.1|Name=mRNA_H-elongata_contig59856.13509.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp CAKVALDVPRNASPADIKKAYRKQALAWHPDKNVRVGNEAEARVRFQELQback to top mRNA from alignment at H-elongata_contig59856:28..1223- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59856.13509.1 ID=mRNA_H-elongata_contig59856.13509.1|Name=mRNA_H-elongata_contig59856.13509.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1196bp|location=Sequence derived from alignment at H-elongata_contig59856:28..1223- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59856:28..1223- >mRNA_H-elongata_contig59856.13509.1 ID=mRNA_H-elongata_contig59856.13509.1|Name=mRNA_H-elongata_contig59856.13509.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig59856:28..1223- (Himanthalia elongata Himel1 dioecious)back to top |