mRNA_H-elongata_contig59823.13502.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59823.13502.1
Unique NamemRNA_H-elongata_contig59823.13502.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: D8LRG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRG5_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 6.550e-77
Identity = 115/126 (91.27%), Postives = 122/126 (96.83%), Query Frame = 1 
Query:    1 MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFNCNPPGDSL 378
            MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLN+IPTEATRMSYVWDAHVFHYIVENGVT+LCMADEQSRRR+PFAFLEDIK++F  QYG SIHTAPAFSMNAEFAP+LQR+MDAFN NPPGDSL
Sbjct:    1 MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNKIPTEATRMSYVWDAHVFHYIVENGVTYLCMADEQSRRRVPFAFLEDIKTKFGAQYGASIHTAPAFSMNAEFAPILQRQMDAFNSNPPGDSL 126
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: A0A1W0A2W1_9STRA (Vesicle-associated membrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2W1_9STRA)

HSP 1 Score: 167 bits (423), Expect = 6.570e-50
Identity = 80/126 (63.49%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFNCNPPGDSL 378
            M IVYAL+ARGK VLAE+TA++GNFPTVTRVLL +IP E ++MSYV+D HVFHYIV++G+T+LCMAD   +RR+PF FLED+K+RF+  YG    TA AF+MNAEF  ++QR+MD FN NP  D++
Sbjct:    1 MAIVYALVARGKIVLAEYTASSGNFPTVTRVLLAKIPLEDSKMSYVYDMHVFHYIVKDGITYLCMADNDFKRRVPFQFLEDMKNRFLTTYGDRGRTAIAFAMNAEFQHVIQRQMDYFNANPEVDTV 126
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: A0A067BQZ4_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BQZ4_SAPPC)

HSP 1 Score: 165 bits (418), Expect = 3.540e-49
Identity = 78/126 (61.90%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFNCNPPGDSL 378
            M IVYALIARGK VLAE+TA++GNFPTVTRVLL +IP + ++MSYV+D HVFHY+V++G+T+LCMAD   +RR+PF FL+D+K+RF+  YG    TA AF+MNAEF  ++QR+MD FN NP  D++
Sbjct:    1 MPIVYALIARGKTVLAEYTASSGNFPTVTRVLLAKIPLDDSKMSYVYDKHVFHYVVKDGITYLCMADNDFKRRVPFQFLDDLKARFLTTYGDRGRTAIAFAMNAEFQHVIQRQMDYFNANPEVDTV 126
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: A0A835YGH9_9STRA (Longin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGH9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 5.170e-49
Identity = 80/125 (64.00%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:    7 IVYALIARGKAVLAEFTATAGNFPTVTRVLLNRI-PTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFNCNPPGDSL 378
            IVY+L+ARGK VLAE+T +AGNFP +TR+LL ++  TE  +MSYV+D HVFHYIVE+G+ +LC+ADEQSRRRIPFAFLEDI+ +F  QYG   HTA AF+MN EFAP+LQR+ D +N +P  D L
Sbjct:    2 IVYSLVARGKCVLAEYTQSAGNFPNITRILLGKVNTTEDGKMSYVYDKHVFHYIVEDGLIYLCLADEQSRRRIPFAFLEDIRRKFRAQYGARPHTALAFAMNEEFAPVLQRQQDYYNVDPSSDQL 126
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: A0A7S2WFM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFM1_9STRA)

HSP 1 Score: 164 bits (415), Expect = 7.510e-49
Identity = 77/126 (61.11%), Postives = 102/126 (80.95%), Query Frame = 1 
Query:    1 MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFNCNPPGDSL 378
            MT+VYAL AR K VLAEFTAT+GNFPTVTRVLL++IP +  +MSYV+D +VFHYIVE G+T+LCM  +  +RRIPFAFLED+K RF  Q+G +IHTA  F+MN  F+P+L+R+M+ +N +P  D++
Sbjct:    1 MTLVYALCARAKTVLAEFTATSGNFPTVTRVLLSKIPPQDGKMSYVYDRYVFHYIVEGGITYLCMTTDTGKRRIPFAFLEDVKRRFQAQFGDAIHTAIPFAMNEAFSPVLKRQMNYYNSDPGADNI 126
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: A0A485L4B2_9STRA (Aste57867_15535 protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485L4B2_9STRA)

HSP 1 Score: 162 bits (411), Expect = 4.060e-48
Identity = 75/126 (59.52%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFNCNPPGDSL 378
            M IVYAL++RGK VLAE+TA++GNFPTVTRVLL +IPTE ++MSYV+D H+FHY+V +G+T+LCMAD   +RR+PF FLED+K+RF+  YG    TA AF+MNAEF  ++QR+M+ +N +P  D++
Sbjct:    1 MPIVYALVSRGKTVLAEYTASSGNFPTVTRVLLAKIPTEDSKMSYVYDQHIFHYVVADGITYLCMADNDFKRRVPFQFLEDLKNRFLATYGERGQTAIAFAMNAEFQHVIQRQMEYYNASPEVDTV 126
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: A0A7S2BSP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSP6_9STRA)

HSP 1 Score: 161 bits (408), Expect = 8.890e-48
Identity = 74/124 (59.68%), Postives = 100/124 (80.65%), Query Frame = 1 
Query:    7 IVYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFNCNPPGDSL 378
            IVYAL ARGK+VL E+T+T+GNFP VTRVLL++IP +  +MSYV+D +VFHY+VE G+T+LCM +E+  RR+PFAFLEDI+ RF  Q+G  +HTA  FS+N EF P+LQR+M+ +N +P  DS+
Sbjct:    2 IVYALCARGKSVLVEYTSTSGNFPVVTRVLLSKIPPQDGKMSYVYDRYVFHYVVECGITYLCMTNEKQTRRVPFAFLEDIRRRFKTQFGEGVHTAIPFSLNEEFVPVLQRQMEYYNSDPSADSI 125
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: A0A397BXD8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BXD8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.290e-47
Identity = 74/123 (60.16%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:   10 VYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFNCNPPGDSL 378
            VYAL++RGK VLAEFTA++GNFPTVTRVLL +IPTE ++MSYV+D H+FHY+V++G+T+LCMAD   +RR+PF FLED+K+RF+  YG    TA AF+MNAEF  ++QR+M+ +N +P  D++
Sbjct:    1 VYALVSRGKTVLAEFTASSGNFPTVTRVLLAKIPTEDSKMSYVYDQHIFHYVVQDGITYLCMADNDFKRRVPFQFLEDLKNRFLATYGERGQTAIAFAMNAEFQHVIQRQMEYYNASPDVDTV 123
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: A0A7S2UV86_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV86_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.790e-47
Identity = 73/118 (61.86%), Postives = 99/118 (83.90%), Query Frame = 1 
Query:    1 MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFN 354
            M I+YALI+RGK VLAE+T T+GNFPT+TRVLL +IP+   +MSYV+D +VFHY+VE+G+T+LCMA+E  RRR+PF FL++IK+RF+ QYG  IHTA AF+MN +F  ++Q++MD FN
Sbjct:    1 MAILYALISRGKVVLAEYTWTSGNFPTITRVLLAKIPSSDAKMSYVYDQYVFHYVVEDGITYLCMAEESDRRRLPFTFLDEIKNRFLAQYGQRIHTAIAFAMNEDFGRVIQKQMDLFN 118
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BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Match: A0A0N7L6Q5_PLAHL (Vesicle-associated membrane n=9 Tax=Peronosporaceae TaxID=4777 RepID=A0A0N7L6Q5_PLAHL)

HSP 1 Score: 159 bits (401), Expect = 1.330e-46
Identity = 78/126 (61.90%), Postives = 96/126 (76.19%), Query Frame = 1 
Query:    1 MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAHVFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAFSMNAEFAPLLQRRMDAFNCNPPGDSL 378
            M IVYAL++R K VLAE+TAT+GNFPTVTRVLL +IP  A RMSYV+D H+FHYIVE GVT+LCMAD+  +RR+PF FLED+K+RF   YG    TA AF+MN +F   + R +D +N NP  DSL
Sbjct:    1 MPIVYALVSREKTVLAEYTATSGNFPTVTRVLLAKIPNTAGRMSYVYDRHIFHYIVEGGVTYLCMADDDLKRRVPFLFLEDMKNRFQATYGQHALTAIAFAMNDQFQHEIHRLLDYYNANPDADSL 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59823.13502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRG5_ECTSI6.550e-7791.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1W0A2W1_9STRA6.570e-5063.49Vesicle-associated membrane protein n=1 Tax=Thraus... [more]
A0A067BQZ4_SAPPC3.540e-4961.90Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A835YGH9_9STRA5.170e-4964.00Longin-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2WFM1_9STRA7.510e-4961.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485L4B2_9STRA4.060e-4859.52Aste57867_15535 protein n=7 Tax=Aphanomyces TaxID=... [more]
A0A7S2BSP6_9STRA8.890e-4859.68Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A397BXD8_9STRA1.290e-4760.16Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S2UV86_9STRA1.790e-4761.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0N7L6Q5_PLAHL1.330e-4661.90Vesicle-associated membrane n=9 Tax=Peronosporacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59823contigH-elongata_contig59823:893..2428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.3
Seed ortholog evalue4e-60
Seed eggNOG ortholog2880.D8LRG5
Preferred nameVAMP7
KEGG koko:K08511,ko:K08515
KEGG Pathwayko04130,map04130
GOsGO:0000149,GO:0000288,GO:0000323,GO:0000932,GO:0000956,GO:0001101,GO:0001775,GO:0001906,GO:0001909,GO:0002228,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002278,GO:0002283,GO:0002285,GO:0002323,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002447,GO:0002449,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002703,GO:0002705,GO:0002886,GO:0002888,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005767,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005802,GO:0005886,GO:0006139,GO:0006259,GO:0006355,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006810,GO:0006869,GO:0006887,GO:0006888,GO:0006892,GO:0006893,GO:0006897,GO:0006906,GO:0006909,GO:0006911,GO:0006914,GO:0006928,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006996,GO:0007017,GO:0007018,GO:0007034,GO:0007041,GO:0007275,GO:0007399,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009986,GO:0009987,GO:0010008,GO:0010033,GO:0010118,GO:0010324,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0010720,GO:0010769,GO:0010770,GO:0010817,GO:0010876,GO:0010970,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0015031,GO:0015074,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016070,GO:0016071,GO:0016192,GO:0016236,GO:0017148,GO:0017156,GO:0017157,GO:0019219,GO:0019222,GO:0019439,GO:0019905,GO:0022008,GO:0022411,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023056,GO:0030014,GO:0030015,GO:0030027,GO:0030101,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030154,GO:0030285,GO:0030658,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030667,GO:0030670,GO:0030672,GO:0030705,GO:0030897,GO:0031090,GO:0031091,GO:0031143,GO:0031201,GO:0031224,GO:0031252,GO:0031300,GO:0031301,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031344,GO:0031346,GO:0031347,GO:0031349,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032101,GO:0032103,GO:0032268,GO:0032269,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033003,GO:0033005,GO:0033006,GO:0033008,GO:0033036,GO:0033157,GO:0033993,GO:0034196,GO:0034197,GO:0034248,GO:0034249,GO:0034613,GO:0034622,GO:0034641,GO:0034655,GO:0035493,GO:0035577,GO:0035770,GO:0036230,GO:0036464,GO:0042119,GO:0042175,GO:0042221,GO:0042267,GO:0042582,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043270,GO:0043299,GO:0043300,GO:0043302,GO:0043304,GO:0043306,GO:0043307,GO:0043308,GO:0043312,GO:0043320,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044754,GO:0045055,GO:0045087,GO:0045177,GO:0045184,GO:0045202,GO:0045321,GO:0045335,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045921,GO:0046483,GO:0046649,GO:0046700,GO:0046883,GO:0046887,GO:0046903,GO:0046907,GO:0047496,GO:0048193,GO:0048280,GO:0048284,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050727,GO:0050729,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050865,GO:0050867,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051588,GO:0051590,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0061951,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072384,GO:0072657,GO:0072659,GO:0080090,GO:0080134,GO:0090087,GO:0090150,GO:0090174,GO:0090304,GO:0090313,GO:0097159,GO:0097305,GO:0097352,GO:0097458,GO:0097708,GO:0098563,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0098876,GO:0099023,GO:0099024,GO:0099111,GO:0099501,GO:0099503,GO:0099518,GO:0120025,GO:0120035,GO:1900006,GO:1900483,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1903305,GO:1903307,GO:1903335,GO:1903506,GO:1903530,GO:1903532,GO:1903533,GO:1903593,GO:1903595,GO:1903827,GO:1905475,GO:1990778,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.SNAP receptor activity
EggNOG OGsCOG5143@1,KOG0859@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLongin domain
Ec32 orthologEc-18_004450.1
Exons3
Model size378
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59823.13502.1prot_H-elongata_contig59823.13502.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59823 893..2428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930968.2455192-CDS-H-elongata_contig59823:892..10301622930968.2455192-CDS-H-elongata_contig59823:892..1030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59823 893..1030 -
1691679644.2798314-CDS-H-elongata_contig59823:892..10301691679644.2798314-CDS-H-elongata_contig59823:892..1030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59823 893..1030 -
1622930968.2650325-CDS-H-elongata_contig59823:1839..19441622930968.2650325-CDS-H-elongata_contig59823:1839..1944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59823 1840..1944 -
1691679644.2903833-CDS-H-elongata_contig59823:1839..19441691679644.2903833-CDS-H-elongata_contig59823:1839..1944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59823 1840..1944 -
1622930968.2813025-CDS-H-elongata_contig59823:2293..24281622930968.2813025-CDS-H-elongata_contig59823:2293..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59823 2294..2428 -
1691679644.3008597-CDS-H-elongata_contig59823:2293..24281691679644.3008597-CDS-H-elongata_contig59823:2293..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59823 2294..2428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59823.13502.1

>prot_H-elongata_contig59823.13502.1 ID=prot_H-elongata_contig59823.13502.1|Name=mRNA_H-elongata_contig59823.13502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNRIPTEATRMSYVWDAH
VFHYIVENGVTFLCMADEQSRRRIPFAFLEDIKSRFVEQYGPSIHTAPAF
SMNAEFAPLLQRRMDAFNCNPPGDSL
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mRNA from alignment at H-elongata_contig59823:893..2428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59823.13502.1 ID=mRNA_H-elongata_contig59823.13502.1|Name=mRNA_H-elongata_contig59823.13502.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1536bp|location=Sequence derived from alignment at H-elongata_contig59823:893..2428- (Himanthalia elongata Himel1 dioecious)
ATGACCATCGTGTACGCATTGATCGCGAGAGGGAAAGCCGTCTTGGCCGA
GTTTACGGCCACGGCAGGTAATTTCCCGACCGTCACCCGCGTCCTCCTCA
ACAGGATTCCTACCGAGGCCACCAGGATGTCGTACGTGAGTCGCTGTTTC
GTTACCCTCAGATTGTTGCCACACTAGAGTTTTCAGTAGTAGTGTACTGT
AATACTGTACTGTAGTGTAGTGTAGTGTTAGGGTTTCGATGTCGAGCATG
ACTAAATTCCAAAGTGGTTTCGTTCGCTCGATCATCCGCGGTTTCAGCAT
CGAAATACGTTACGCCCATGAGAGGGAAATTATATGATACGAAGTATGAG
GTCAGGTGAGATCAGGCCAGATGATAAGGTCACCGAGAAGAATAGCAAGA
TGCCCCTAATCCTAACCCTAACCCTAACCCTAACCTTCACTGCCCAACTG
TACTCTCCTCGCCTAAAACTAAACGAGTCATCAGGTGTGGGATGCTCACG
TTTTCCACTACATCGTTGAAAACGGCGTAACGTTCCTGTGCATGGCGGAC
GAGCAATCTCGTCGTCGGATTCCATTCGCATTCCTTGAGGTGACGTAACA
ATCCTAACCCTATCCTAACGATCGTAAAGATGGACATCACCCTAGCGTCT
CGAGAGCCGAAGTGGTTGTTGTTTCCTCTTTTTATCAGTTTGCATTAGGC
CGCCCTAACCCTAACCGGCATGGCACATAAAAGGGCGCCACGCCGGTTTG
CAAATGCCTTCCTCCTTATGAAGACCTGTCCCCCTTCCTCTCAATGAATG
ACGTTGAATTGGCTGCTCTTTGGCTAGCTTGAGTATTAGCTATTAGCCAC
CGTATTCAAATTCATAGTTGCCGCTGCAATAGTTGTTATACTAACTATCA
TACTAATAATACCTAATAAATATTAACCCTAACCTATAGACTAATTACTA
ATTACTGTACTAACCCTAACCTAACCCTAACCCTAACCTAACCCTATAAT
ACTACCTTGTAACTAATAGTATTACGCTCGCTACCTAACTGCTTGATGGT
CACGACACTTGGCCTAACCTTAATCCCAAAAACCTTTGCTGAGGCTCGCG
TGCTTTGGCCATTTTTTGTTATCATCCTTCATCATCAAGCTTTCGTCTCA
CAGTAACGCTCGAAAACCCTAACCCTAACCCTAATCCACTATCCTAATGT
TGTACACCGTATTCTTTATTTTGTACTACGTATTTATATGCCGTACTAGT
ACTGTACCGTATTGTGTTGTGACTCTTGTACCGTATTGTATATCGATCGA
ATTGTGTTGTACAGAGTATTTTGTATATCTATGCCGTACTTGTACCGTAT
TGTGACTCTTGTATTTATATACCGTATGCTATACCGTATACACTGCAGGA
CATCAAATCGCGATTCGTCGAGCAGTATGGACCCAGCATACACACTGCAC
CCGCATTCAGCATGAACGCTGAATTCGCCCCTCTGCTGCAGCGGCGAATG
GACGCGTTTAATTGTAACCCCCCCGGAGATTCATTA
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Coding sequence (CDS) from alignment at H-elongata_contig59823:893..2428-

>mRNA_H-elongata_contig59823.13502.1 ID=mRNA_H-elongata_contig59823.13502.1|Name=mRNA_H-elongata_contig59823.13502.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig59823:893..2428- (Himanthalia elongata Himel1 dioecious)
ATGACCATCGTGTACGCATTGATCGCGAGAGGGAAAGCCGTCTTGGCCGA
GTTTACGGCCACGGCAGGTAATTTCCCGACCGTCACCCGCGTCCTCCTCA
ACAGGATTCCTACCGAGGCCACCAGGATGTCGTACATGACCATCGTGTAC
GCATTGATCGCGAGAGGGAAAGCCGTCTTGGCCGAGTTTACGGCCACGGC
AGGTAATTTCCCGACCGTCACCCGCGTCCTCCTCAACAGGATTCCTACCG
AGGCCACCAGGATGTCGTACGTGTGGGATGCTCACGTTTTCCACTACATC
GTTGAAAACGGCGTAACGTTCCTGTGCATGGCGGACGAGCAATCTCGTCG
TCGGATTCCATTCGCATTCCTTGAGGTGTGGGATGCTCACGTTTTCCACT
ACATCGTTGAAAACGGCGTAACGTTCCTGTGCATGGCGGACGAGCAATCT
CGTCGTCGGATTCCATTCGCATTCCTTGAGGACATCAAATCGCGATTCGT
CGAGCAGTATGGACCCAGCATACACACTGCACCCGCATTCAGCATGAACG
CTGAATTCGCCCCTCTGCTGCAGCGGCGAATGGACGCGTTTAATTGTAAC
CCCCCCGGAGATTCATTAGACATCAAATCGCGATTCGTCGAGCAGTATGG
ACCCAGCATACACACTGCACCCGCATTCAGCATGAACGCTGAATTCGCCC
CTCTGCTGCAGCGGCGAATGGACGCGTTTAATTGTAACCCCCCCGGAGAT
TCATTA
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