mRNA_H-elongata_contig5980.13500.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5980.13500.1
Unique NamemRNA_H-elongata_contig5980.13500.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5980.13500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5980contigH-elongata_contig5980:8488..10214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size250
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5980.13500.1prot_H-elongata_contig5980.13500.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5980 8507..10214 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.7766678-UTR-H-elongata_contig5980:8487..85061622930967.7766678-UTR-H-elongata_contig5980:8487..8506Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5980 8488..8506 +
1691679644.0562208-UTR-H-elongata_contig5980:8487..85061691679644.0562208-UTR-H-elongata_contig5980:8487..8506Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5980 8488..8506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.7934728-CDS-H-elongata_contig5980:8506..85261622930967.7934728-CDS-H-elongata_contig5980:8506..8526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 8507..8526 +
1691679644.070748-CDS-H-elongata_contig5980:8506..85261691679644.070748-CDS-H-elongata_contig5980:8506..8526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 8507..8526 +
1622930967.8128204-CDS-H-elongata_contig5980:8883..89701622930967.8128204-CDS-H-elongata_contig5980:8883..8970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 8884..8970 +
1691679644.0797698-CDS-H-elongata_contig5980:8883..89701691679644.0797698-CDS-H-elongata_contig5980:8883..8970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 8884..8970 +
1622930967.8435757-CDS-H-elongata_contig5980:9254..93261622930967.8435757-CDS-H-elongata_contig5980:9254..9326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 9255..9326 +
1691679644.0875854-CDS-H-elongata_contig5980:9254..93261691679644.0875854-CDS-H-elongata_contig5980:9254..9326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 9255..9326 +
1622930967.8641129-CDS-H-elongata_contig5980:10162..102141622930967.8641129-CDS-H-elongata_contig5980:10162..10214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 10163..10214 +
1691679644.102374-CDS-H-elongata_contig5980:10162..102141691679644.102374-CDS-H-elongata_contig5980:10162..10214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 10163..10214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5980.13500.1

>prot_H-elongata_contig5980.13500.1 ID=prot_H-elongata_contig5980.13500.1|Name=mRNA_H-elongata_contig5980.13500.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MYTLKTLSAVGNQITFLPPKFFQLDDTQGDESLATVNFNDNALTTLPADL
FYDLVSLRTLILGPTGNEDLECVPTT*
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mRNA from alignment at H-elongata_contig5980:8488..10214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5980.13500.1 ID=mRNA_H-elongata_contig5980.13500.1|Name=mRNA_H-elongata_contig5980.13500.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1727bp|location=Sequence derived from alignment at H-elongata_contig5980:8488..10214+ (Himanthalia elongata Himel1 dioecious)
GGAGGAACTCATCCATGGGATGTACACCCTGAAAACTTTGTGAGTACCGG
TGGCTTCAAGGTCCGGGTAGAGGTGCCAAGACAACGCGTGCTACTCTAGG
AGCGATACATGTCTTCCTACTGTATTGCTGTTTCGTGTCTTAACGATCCT
AGCCCGCACGTAGTTATTTGTTAGAGACCCCTCGTGCTGGTTACGCCAAC
GCTGTTGTTCCAAAGCTTTTCAATACGACGAGCTGACGTGTTCGACGCAT
TTTTTTATACATACGGTCGGTCTTCCATGTACTATATTAGGCAGAAAACA
CCTGTTTCTCACGCCAGCTCGAGCATAAAAGGACATGAAGTATTCACATG
TTGCCCGTCCCTTTGCGTGCTCAAATCGATGCCGCAATTGTATCAGGAGC
GCCGTCGGCAACCAGATAACGTTCTTGCCGCCCAAGTTCTTCCAACTCGA
TGACACGCAAGGGGACGAAAGTCTGGCAACTGTGTGAGTGGTGCGCTGCG
CGAACGGTCGGAGACCATAGAATTGTATTATCACGAAATATTTGGAGAGG
TGAGGCACCAGCCTCCTACGTGGTGAATATATTATTTGCAGAAGACGGAA
GGCCACCAGGATGCTTGGTTGCTTGAAGCGTTGCTTGGTTCCAGAAGGGA
ATTGGAAAATTTCAAGCAACCCACCCTGCACGCGTCACATCGGTTTTGTA
CCCAAATAGAGCCTCCGCACCCTTAGCTCTGTTCACGTGCAAACCTCTCG
CGCTCGAAATCTGACAGGAACTTCAACGACAATGCTCTCACTACATTGCC
TGCCGATCTTTTCTACGACCTGGTTTCCCTTCGCACACTGTGAGTACGGA
TGTGCCTTCACGCTGCTAACGGGATTGCTCAGCAAGCTGCACGTTGATAT
AGTGCCATGGGCGAGACGGATCGTCCAAGAGTATCTATAGTCCTTGTTTT
GCTGAGCGATGTGGCTACGAAAAGTGTGTACACCCTCTTGTTTGATGCTG
TTGTCCGGGTGTGTAATTATCTATTTGGTTGATTGATTAGTTTGATTGAT
TGCTAGGTTGATCGCTTGGTTGATTGATTGATTGATTGATTGAGTGATTG
AAAGCGTTGTTGAAACGTTGATTGAACTTGGACGGAACGTTGGTGGAACG
TTGATTGATTGAGCGTTTATTGAACGTTAATGCAACGTCGATTGATTGGT
TCACTGAGTGATTGATTGCCCTAGTGCGGTTACATGGTACGTATCCTACA
ATGCATCCTTCAAGTTTGGAAATTCCTCTGTTAAATTGCTGATTGTGTCA
ACTCAACAATCTGGGCTGTTTAGTAGCCGAATCGCTTAAGGTTTGGGTGC
GTGGGGCCACAACGAACGGTACCGCTACGCATACCACAAACAGTGTAATT
GTGTCAAGTAAACCCTGGCTTCCATCGATTGCCATGGCCAATGCATGCCT
ACGTACCTCGAATACTAGAGCAACAACATATTAACCCACTCTGCCTTGAG
GGATATTGGTGTAGTGATTGCTTGTTGTTCACACCAGGTTTTGTTGCCTT
CAACACCCAGCATGTGTCGAGCTCGACAGCGAAAAACGTGGACAGCGAAA
ACCGTGCCCAGTCCCGTCATATTTTCGTTCGTTTCTGCTCGACATGTCCG
TGCGCTGCCGTTGTTGCTCGTGCAGCATATTAGGGCCAACCGGCAACGAG
GATCTTGAGTGCGTGCCTACCACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig5980:8488..10214+

>mRNA_H-elongata_contig5980.13500.1 ID=mRNA_H-elongata_contig5980.13500.1|Name=mRNA_H-elongata_contig5980.13500.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig5980:8488..10214+ (Himanthalia elongata Himel1 dioecious)
ATGTACACCCTGAAAACTTTATGTACACCCTGAAAACTTTGAGCGCCGTC
GGCAACCAGATAACGTTCTTGCCGCCCAAGTTCTTCCAACTCGATGACAC
GCAAGGGGACGAAAGTCTGGCAACTGTGAGCGCCGTCGGCAACCAGATAA
CGTTCTTGCCGCCCAAGTTCTTCCAACTCGATGACACGCAAGGGGACGAA
AGTCTGGCAACTGTGAACTTCAACGACAATGCTCTCACTACATTGCCTGC
CGATCTTTTCTACGACCTGGTTTCCCTTCGCACACTGAACTTCAACGACA
ATGCTCTCACTACATTGCCTGCCGATCTTTTCTACGACCTGGTTTCCCTT
CGCACACTCATATTAGGGCCAACCGGCAACGAGGATCTTGAGTGCGTGCC
TACCACGTGACATATTAGGGCCAACCGGCAACGAGGATCTTGAGTGCGTG
CCTACCACGTGA
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