mRNA_H-elongata_contig5980.13499.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5980.13499.1
Unique NamemRNA_H-elongata_contig5980.13499.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5980.13499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5980contigH-elongata_contig5980:2656..5540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size201
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5980.13499.1prot_H-elongata_contig5980.13499.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5980 2656..5450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.6961484-CDS-H-elongata_contig5980:2655..28521622930967.6961484-CDS-H-elongata_contig5980:2655..2852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 2656..2852 +
1691679644.0190022-CDS-H-elongata_contig5980:2655..28521691679644.0190022-CDS-H-elongata_contig5980:2655..2852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 2656..2852 +
1622930967.7131345-CDS-H-elongata_contig5980:5446..54501622930967.7131345-CDS-H-elongata_contig5980:5446..5450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 5447..5450 +
1691679644.0301595-CDS-H-elongata_contig5980:5446..54501691679644.0301595-CDS-H-elongata_contig5980:5446..5450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5980 5447..5450 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.7251303-UTR-H-elongata_contig5980:5450..55401622930967.7251303-UTR-H-elongata_contig5980:5450..5540Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5980 5451..5540 +
1691679644.040591-UTR-H-elongata_contig5980:5450..55401691679644.040591-UTR-H-elongata_contig5980:5450..5540Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5980 5451..5540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5980.13499.1

>prot_H-elongata_contig5980.13499.1 ID=prot_H-elongata_contig5980.13499.1|Name=mRNA_H-elongata_contig5980.13499.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
PTPTPTLTPTPLRGSSRLYIGSPRTSGIVSRPPQARTTCPSPSRSLLLSL
LRRTFAPFESSTFVRR*
back to top

mRNA from alignment at H-elongata_contig5980:2656..5540+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5980.13499.1 ID=mRNA_H-elongata_contig5980.13499.1|Name=mRNA_H-elongata_contig5980.13499.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2885bp|location=Sequence derived from alignment at H-elongata_contig5980:2656..5540+ (Himanthalia elongata Himel1 dioecious)
CCGACACCCACTCCCACACTCACACCCACACCTTTGAGGGGCTCCTCGCG
TTTGTACATTGGATCGCCTCGGACCTCTGGCATCGTATCGAGACCCCCGC
AAGCACGTACTACCTGCCCCAGCCCTTCCCGTTCACTTCTACTGTCGTTG
CTTCGACGAACCTTTGCGCCATTTGAAAGCTCAACGTTCGTCCGTAGGTG
AGTCATTTGGTTCACAAAATGCGATGTAGTACCGATGATTGACGTGTCCA
TGCCCCGCCACGCGATCGAGCGTGCAGGATCATGCCTCCTAAACGTGACA
TACAGTACAGCAGTCATACAAGAGGGCAGGTGGAAACGGTGGTGTGCTCG
GCTCCGAGGAGTGCATTTGATTTTGGTACTTTACAGGTGCTCGGAGCTAC
AGGTTGTAGGTTGAGGTGCAGATTGTGTGTTTGTTTCTAGGGTCAGCCAC
AAATATTATATATATATATATACATATTGTGAATCAGGGGGGGGGAGGGG
GGGCGCCAGGCTGGGCGAACGTGGCGTGGATGTCAATGCTTGCGTTTGAG
ATTTCGTCTCTCTCCGAATATATATATAGAGTGGGTGCTTGGTCTGTATC
GACTCGCGTGAAGCCTGCGTCTGCAGCCGAGTTTGCGATGCGCAAGGCTA
CAAGTACGTGCACTATATACGTGATTGTTATGTTGGACGCGCTGATGTGT
ACCAACAACAGGTGCGACGGGTGACATAGTTGGGAAGATCAGTATTTAGG
GGTGTTCCCCGATCATTGAGGGTATAGGCTTACCGTAGGGTATAGGTATT
GAAACCAAGTATAGACACAAGCAGTAGGATATAAGGCCTCAACGTTTCCG
GACATTTTCAACCTCGCAACCCTGCTGACTCGCCCCCTAACCCAACCCAC
ATGGTTCTCTTTCCCCAAGAGGAGTTTACCCCCCCCCTTGAAGTTACGAA
GAACGTGATATCAACAGAATTGTGCCAAAATTGGTGTGTTATGCATAATC
ATTTCCCCGCTTGGTGTGGTATTCATCATCAGCCCCCACCTTCTCCCCCG
TTCTGGTTCGCTACGGGTCTGATACAGCAGTGCCTCCCCCCCCGCTCCGA
TGGTTGTCTGTTGGTACAGCATATCGCCGGATCCTTTCCTGGATACCTGC
TCCATAGTATGTTGCTCGTGATCATAGATAAAGGCGTGAGATAAATGTCT
AGCTGTGGACGTCCGTTGTGGAGAGAGATCGTGCCGCCAGCTTCCGACTT
CGCAGTCTAGCACTACGTCAGGTCACCAAATTTGCAACATTTTGGTGTTT
ACCCTGATCATGCTTTGGTTGAAGAGACCAGTTACGTCGAACGCTCACTG
GGAGCAGTATTTTGCACAATATCGTGTTTGTGGTTTAGGGTATTATTACT
CTCATTTGACCAAGAGGGGTGATTGGTGACCAACTGGTTGGCCAGTTGGT
CATTAGCACTCGTAAAAACCAAGACTGTAATAATTAATCCAATACTACCA
CGATACGAGTGATACATAGTACAGCTCAGACGAGGCAGGTGTCTTGCCCT
GCAGGCTAAGATACGATATGCCACATACTGCCGCCCTTTCTTTTCGTTGC
GTCGCCGCCTATGAGCGGGAGGTGGGGAGGGTCTTTCAGGCGGGTGCAAG
GCTGGACTCACCCTTGAGGGCCCACTCCTTCTTACTGCTAGTCCCGATGA
CAGTGGTTGTGTTTTTTTTGGTGATGGAGTTGTTCGTCAGGTGTATCTCA
TCGAAATTGGGTGCTAGCATGGGTTATAATATATCATCTGTAAGGTGTGC
GCGCGAGGCAGGCGGCACTCCCGCAAAATACGTGGCAAGCGTACCATACG
GGTTGTACTGTCTACGTGAGTAAGCATCACATTTGGCGAGGCGGAGTGAA
GATCGATCGTTGACGAGATGGGGAACGGCAGCCCCCTACTCGCGAAAAGC
AAGGCGGGCACAATCGAGGTCATTTGTTGAGGGCATTTTATTTGTGCGAG
CATCAGAACGAGACCAGGGTCATCGCCACCGAACAGCGGAGCATCTCTTT
CGATTTATTTATTTTTGCCTTCAGCAGATTTAGAACATTTTGGAGTTTGT
GCAAAGGAATAAACATGGTATGGTTCACCGTACTGCTCAGAGCATATCAC
GTGGGTAGTCGCAGTTCCCCGTTGCATTCAAGGTGCTGTTGAGATCTACT
CTTCGAAGAGTACTCGATGATTGTCCTTTGACTTGCGTTTGCCTGGTTCT
AGCATGGGATCTAACAGCACTTCAGACAATCATGCAGTTCTGCGCTGACT
ATTCTTCTTGAATTGCAGCAGTGCTGTTGTAATCTAGCCCCACAGTAACA
ATGGTTTGGCTGCTGCTGCATGTGGGCCTAAGCAGTACGCCAGGCAGTAC
TCTCTGTAGCCCTTGAACAAATGAAGACATCTTGTTGTTGGCTGTAGTCA
GATGCCGTTCGAGGTATCGGGATAATTCGTTTGAGGCTTGGTTTTGGCTG
TTTTATTTCGTGCGCCGTGTGTATGGATGCCGATTATGGGGTCTTCTGTG
CATGACCTACTGTACCTCTTTTGAGACCACAAGGGGAGTCGGTGTGGAGG
AGATCGGTCGGTTATAAGTGGGAAATAAAACCAATAATATCAAATATAAG
CCGAGATGTTCAGACCTCTCAGAGCACCCGTCTTGAGTGGACACGGACAC
AACGCACGCTATTGAAGGTTCCAGTGTGCCTCCACCATTACATTGCTTAG
TTCACGCACTTCACGCACAGTTCCCACGTCATCCGACACAGGTAGGAGCT
CCCAACGCACGTCCGGTCTCAGGCTCAAACTCCATCGCCATGCACACTAC
CTGGGCGTTGCTCCCTCTCTGTACGTTGCTGAGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5980:2656..5540+

>mRNA_H-elongata_contig5980.13499.1 ID=mRNA_H-elongata_contig5980.13499.1|Name=mRNA_H-elongata_contig5980.13499.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig5980:2656..5540+ (Himanthalia elongata Himel1 dioecious)
CCGACACCCACTCCCACACTCACACCCACACCTTTGAGGGGCTCCTCGCG
TTTGTACATTGGATCGCCTCGGACCTCTGGCATCGTATCGAGACCCCCGC
AAGCACGTACTACCTGCCCCAGCCCTTCCCGTTCACTTCTACTGTCGTTG
CTTCGACGAACCTTTGCGCCATTTGAAAGCTCAACGTTCGTCCGTAGCCG
ACACCCACTCCCACACTCACACCCACACCTTTGAGGGGCTCCTCGCGTTT
GTACATTGGATCGCCTCGGACCTCTGGCATCGTATCGAGACCCCCGCAAG
CACGTACTACCTGCCCCAGCCCTTCCCGTTCACTTCTACTGTCGTTGCTT
CGACGAACCTTTGCGCCATTTGAAAGCTCAACGTTCGTCCGTAGGTAGGT
AG
back to top