mRNA_H-elongata_contig59791.13497.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59791.13497.1
Unique NamemRNA_H-elongata_contig59791.13497.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: D8LC06_ECTSI (Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC06_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 5.310e-40
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:    1 FALSVHYRHVPDS-HVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAMENR 273
            F+LSVHYR VP   HVEELH+IVH+Y+   P+IVVK GKKVLELRPKV W+KGSAVNWILDAL+LG++ DVFPIYLGDDI+DEDAFVAME R
Sbjct:  163 FSLSVHYRQVPSPPHVEELHNIVHEYVATAPEIVVKAGKKVLELRPKVDWHKGSAVNWILDALDLGNRSDVFPIYLGDDITDEDAFVAMETR 254
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: A0A7S2WT46_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WT46_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.220e-28
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 FALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAM 264
            FALSVHYR+VPD +VE + +IV   +++ PD+ +K GKKVLELRPKV WNKGSAV WI+  L L    D+FP YLGDDI+DEDAFVA+
Sbjct:  239 FALSVHYRNVPDQYVELVFEIVSALVERQPDLALKHGKKVLELRPKVDWNKGSAVLWIMRQLGLDTAEDIFPFYLGDDITDEDAFVAL 326
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: A0A7S2D2V7_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2V7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 9.280e-24
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 FALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAMEN 270
            FALSVHYR+V    + E+H  V+ Y+  +  + ++ GK VLE+RPKV WNKGSAV WIL AL L    DVFP+YLGDD++DEDAF+A+ +
Sbjct:  223 FALSVHYRNVSPELIPEVHAAVNAYIADESSLELRHGKMVLEVRPKVSWNKGSAVVWILKALGLDQSEDVFPLYLGDDMTDEDAFLALRS 312
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: A0A1U9NLK5_9BACT (Trehalose 6-phosphate phosphatase n=1 Tax=Anaerohalosphaera lusitana TaxID=1936003 RepID=A0A1U9NLK5_9BACT)

HSP 1 Score: 100 bits (248), Expect = 1.180e-22
Identity = 49/92 (53.26%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    1 FALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVF-PIYLGDDISDEDAFVAMENR 273
            FA++VHYR VPD+ V++L +I H+  D  P + +  GKK+ ELRP V+W+KGSAV W+L+ LEL   PD F PIY+GDD++DEDAF A++++
Sbjct:  394 FAIAVHYRQVPDNRVDDLLEIGHELADSYPQLKLTGGKKIFELRPNVEWDKGSAVLWLLEKLELD--PDKFLPIYIGDDLTDEDAFKALKSK 483
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: A0A6B2GWE1_9BACT (Trehalose 6-phosphate phosphatase n=1 Tax=Pontibacter fetidus TaxID=2700082 RepID=A0A6B2GWE1_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 1.210e-21
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    1 FALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAME 267
            +A++VHYR+V D+ V E+  IV   L   P +    GKKV EL+P + W+KG AV W+LD L L  KPD+ PIY+GDDI+DEDAF A++
Sbjct:  146 YAIAVHYRNVADAQVNEVETIVDTVLSDHPQLKKGLGKKVFELKPNLDWHKGKAVFWLLDELHLN-KPDIVPIYIGDDITDEDAFAALQ 233
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: A0A8K1CGA6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGA6_PYTOL)

HSP 1 Score: 95.5 bits (236), Expect = 1.250e-21
Identity = 51/90 (56.67%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    4 ALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAMENR 273
            A+SVHYRHV      E+ DIV DY+ + P +V K GKKV ELRP+V W+KG AV +IL  L L D  +V P YLGDD+SDEDAF A+ +R
Sbjct:  172 AVSVHYRHVAMEFQAEVEDIVDDYIIQHPSLVKKHGKKVFELRPRVDWDKGRAVMYILSELGL-DAENVVPFYLGDDVSDEDAFSALNSR 260
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: A0A1I7FRS8_9BACT (Trehalose 6-phosphate phosphatase n=1 Tax=Pontibacter akesuensis TaxID=388950 RepID=A0A1I7FRS8_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 2.340e-21
Identity = 40/91 (43.96%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    1 FALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAMENR 273
            +A++VHYR+VP+  V E+ ++V + L K  ++    GKK++EL+P + W+KG AV W++D LEL  +PD+ P+Y+GDD++DEDAF  ++ +
Sbjct:  146 YAIAVHYRNVPEEQVSEVLEVVQEVLAKHQELKPGPGKKIMELKPNLDWHKGKAVLWLMDKLELN-QPDIVPLYIGDDLTDEDAFATLQGQ 235
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: A0A804I6A0_MUSAM (Trehalose 6-phosphate phosphatase n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804I6A0_MUSAM)

HSP 1 Score: 94.0 bits (232), Expect = 5.410e-21
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    1 FALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAMENR 273
            F+LSVHYR V D  +  L ++V   L+  P++   +GKKVLE+RP + W+KG A+ ++L++L  GD+ DVFP+Y+GDD +DEDAF  + +R
Sbjct:  190 FSLSVHYRCVDDKILSSLFEMVKSVLEDYPELRRTSGKKVLEIRPSINWDKGKALEFLLESLGFGDRTDVFPVYIGDDCTDEDAFKVLRDR 280
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: A0A2Z7ARJ9_9LAMI (Trehalose 6-phosphate phosphatase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7ARJ9_9LAMI)

HSP 1 Score: 94.0 bits (232), Expect = 6.170e-21
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 FALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAMENR 273
            F +SVHYRHV D     L +I+H+ L + P   +  GKKVLE+RP +KWNKG A+ ++LD L   D  +V PIY+GDD +DEDAF  + +R
Sbjct:  209 FCVSVHYRHVLDEDYGMLEEIIHNVLSEYPCFHLTRGKKVLEIRPSIKWNKGDALVYLLDTLGFSDSTNVIPIYIGDDRTDEDAFKVLRSR 299
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BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Match: UPI001FA702AF (trehalose-phosphatase n=1 Tax=Pontibacter sp. NBU2971 TaxID=2905677 RepID=UPI001FA702AF)

HSP 1 Score: 92.8 bits (229), Expect = 6.910e-21
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    1 FALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWNKGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAMENR 273
            +A++VHYR+VPD  VE++  + ++ +   P++    GKKVLEL+P + W+KG AV W+L  LEL  +P + P+Y+GDD++DEDAF  ++ R
Sbjct:  147 YAIAVHYRNVPDEQVEQVLRVTNEVIANHPELKKGPGKKVLELKPNLDWHKGKAVEWLLRELELN-QPGIVPLYIGDDLTDEDAFATLQGR 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59791.13497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC06_ECTSI5.310e-4077.17Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarp... [more]
A0A7S2WT46_9STRA2.220e-2863.64Trehalose 6-phosphate phosphatase n=1 Tax=Rhizochr... [more]
A0A7S2D2V7_9STRA9.280e-2455.56Trehalose 6-phosphate phosphatase n=1 Tax=Dictyoch... [more]
A0A1U9NLK5_9BACT1.180e-2253.26Trehalose 6-phosphate phosphatase n=1 Tax=Anaeroha... [more]
A0A6B2GWE1_9BACT1.210e-2151.69Trehalose 6-phosphate phosphatase n=1 Tax=Pontibac... [more]
A0A8K1CGA6_PYTOL1.250e-2156.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1I7FRS8_9BACT2.340e-2143.96Trehalose 6-phosphate phosphatase n=1 Tax=Pontibac... [more]
A0A804I6A0_MUSAM5.410e-2147.25Trehalose 6-phosphate phosphatase n=1 Tax=Musa acu... [more]
A0A2Z7ARJ9_9LAMI6.170e-2149.45Trehalose 6-phosphate phosphatase n=1 Tax=Dorcocer... [more]
UPI001FA702AF6.910e-2145.05trehalose-phosphatase n=1 Tax=Pontibacter sp. NBU2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59791contigH-elongata_contig59791:2029..3005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.4
Seed ortholog evalue3.6e-18
Seed eggNOG ortholog4641.GSMUA_Achr2P22170_001
KEGG rclassRC00017
KEGG koko:K01087
KEGG ReactionR02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004805,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010038,GO:0015927,GO:0016020,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016798,GO:0019203,GO:0022603,GO:0030312,GO:0031974,GO:0031981,GO:0034637,GO:0042221,GO:0042578,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046351,GO:0046686,GO:0048831,GO:0050789,GO:0050793,GO:0050896,GO:0051239,GO:0060688,GO:0065007,GO:0070013,GO:0071704,GO:0071944,GO:1900618,GO:1901576,GO:1905428,GO:2000026,GO:2000032
EggNOG free text desc.Removes the phosphate from trehalose 6-phosphate to produce free trehalose
EggNOG OGs37JPC@33090,3GB9D@35493,3M4XG@4447,COG1877@1,KOG1050@2759
EC3.1.3.12
COG Functional cat.G
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.5812805-CDS-H-elongata_contig59791:2028..21871622930967.5812805-CDS-H-elongata_contig59791:2028..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59791 2029..2187 -
1691679643.9727492-CDS-H-elongata_contig59791:2028..21871691679643.9727492-CDS-H-elongata_contig59791:2028..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59791 2029..2187 -
1622930967.596688-CDS-H-elongata_contig59791:2888..30051622930967.596688-CDS-H-elongata_contig59791:2888..3005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59791 2889..3005 -
1691679643.9874873-CDS-H-elongata_contig59791:2888..30051691679643.9874873-CDS-H-elongata_contig59791:2888..3005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59791 2889..3005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59791.13497.1prot_H-elongata_contig59791.13497.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59791 2029..3005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59791.13497.1

>prot_H-elongata_contig59791.13497.1 ID=prot_H-elongata_contig59791.13497.1|Name=mRNA_H-elongata_contig59791.13497.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
FALSVHYRHVPDSHVEELHDIVHDYLDKDPDIVVKTGKKVLELRPKVKWN
KGSAVNWILDALELGDKPDVFPIYLGDDISDEDAFVAMENR*
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mRNA from alignment at H-elongata_contig59791:2029..3005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59791.13497.1 ID=mRNA_H-elongata_contig59791.13497.1|Name=mRNA_H-elongata_contig59791.13497.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=977bp|location=Sequence derived from alignment at H-elongata_contig59791:2029..3005- (Himanthalia elongata Himel1 dioecious)
TTTGCGCTGAGCGTCCACTATCGCCACGTCCCCGATTCTCATGTAGAAGA
GCTGCATGATATCGTCCACGACTACTTGGACAAGGATCCTGATATCGTAG
TCAAGACGGGGAAGAAGGTGTGTTCGGGAGTGGGGGGGGGGCATCTCTAG
TGTCCCCGTTGTTAATGATCTCTCTTGGGCTCTTCGTGGAGTGCGTCTCG
CAAAAGTAACGCGTGTACTTCAACCGCAGACAGTGGGAGCTCCGCGCATT
GCCTTGAGTGGTGACTCACACGAATAAAAAAACGCGGTATCTTATTAGGT
AGATTTTCCTTTTCCTTCTCGTTGTTTGTTCAGATCCTTCCCCTCCCCCC
TCACACGACGGAAAGAAATCCCGATGTAATGTGTTTTGGAGATGATTTGG
TGCCGCGGATCCTTTCGTCGACCACTCTCCGTACAGCTGTTGGCTTGCAT
TACTACCACCGATTATGTCGGTAAGTAGGATGCGTTACAGAGTTGCCCAA
TAATCGATCTCTCTATTTTACCATCAAACCCTGTTTAGTTCTAAAGGTTG
AATTGAATAGTGCATCACTGCGGTTGCTGTAATTTTATGGCGGGTGACCA
GGGACCAAGCGTCGTTTCAGTTGTAAACGTTTTCCATCGTCCTTTTCCGG
AAGGGAATAAAAATTCAGTCGCGTTGTGTGATTCAAAAGCAAAATAAAAG
GAATCGTGAAAGCACAAAATGAAGAGAAGTCCATGAAATGATATACGAAA
TCCATATTAAAAATCGATACAAAAAATTATAAGAAATCGATATGAGGGGT
GGGGGGGATGCTGCCCAGGTGCTGGAGCTCCGTCCGAAGGTAAAGTGGAA
TAAGGGAAGCGCCGTTAACTGGATCCTTGATGCCTTGGAGCTCGGCGATA
AGCCTGACGTGTTCCCCATATATCTTGGGGACGATATTTCTGACGAGGAT
GCCTTCGTTGCTATGGAAAATCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig59791:2029..3005-

>mRNA_H-elongata_contig59791.13497.1 ID=mRNA_H-elongata_contig59791.13497.1|Name=mRNA_H-elongata_contig59791.13497.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig59791:2029..3005- (Himanthalia elongata Himel1 dioecious)
TTTGCGCTGAGCGTCCACTATCGCCACGTCCCCGATTCTCATGTAGAAGA
GCTGCATGATATCGTCCACGACTACTTGGACAAGGATCCTGATATCGTAG
TCAAGACGGGGAAGAAGTTTGCGCTGAGCGTCCACTATCGCCACGTCCCC
GATTCTCATGTAGAAGAGCTGCATGATATCGTCCACGACTACTTGGACAA
GGATCCTGATATCGTAGTCAAGACGGGGAAGAAGGTGCTGGAGCTCCGTC
CGAAGGTAAAGTGGAATAAGGGAAGCGCCGTTAACTGGATCCTTGATGCC
TTGGAGCTCGGCGATAAGCCTGACGTGTTCCCCATATATCTTGGGGACGA
TATTTCTGACGAGGATGCCTTCGTTGCTATGGAAAATCGGTGAGTGCTGG
AGCTCCGTCCGAAGGTAAAGTGGAATAAGGGAAGCGCCGTTAACTGGATC
CTTGATGCCTTGGAGCTCGGCGATAAGCCTGACGTGTTCCCCATATATCT
TGGGGACGATATTTCTGACGAGGATGCCTTCGTTGCTATGGAAAATCGGT
GA
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