mRNA_H-elongata_contig59783.13496.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: D7FHH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH4_ECTSI) HSP 1 Score: 260 bits (664), Expect = 3.250e-82 Identity = 128/160 (80.00%), Postives = 141/160 (88.12%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQVRK 480
RDLIVVGAGVIGMEYACMINVVPGTTVTV+DPRP VL FAD DVIE+LQY MRQ GARFLLNE +T++EK+ K+ +V+AH SGKRVVGDALLYTMGRQGNTDS+DL GLEAD+RGLLEVNDFYQTSNPRVYACGD+IGYPALASTSMEQ R+
Sbjct: 183 RDLIVVGAGVIGMEYACMINVVPGTTVTVIDPRPTVLSFADNDVIENLQYTMRQNGARFLLNEHITRIEKIEKKDSNGGVKVIAHLASGKRVVGDALLYTMGRQGNTDSMDLARAGLEADKRGLLEVNDFYQTSNPRVYACGDVIGYPALASTSMEQGRR 342
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: A0A835ZER9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER9_9STRA) HSP 1 Score: 234 bits (596), Expect = 2.500e-71 Identity = 116/160 (72.50%), Postives = 135/160 (84.38%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQVRK 480
R+L+VVGAGVIGMEYA M+N++PGT VTV+DPR +L FAD +V+++L Y+MR +GARFLLNEK+ +VEK G R RVVAH SGK+VVGDA+LY MGRQGNTDSL L SVGLE D RGLLEVNDFYQTSNPRVYACGD+IGYPALASTSMEQ R+
Sbjct: 260 RELMVVGAGVIGMEYASMMNIIPGTNVTVIDPRDKMLGFADTEVVQALMYSMRTKGARFLLNEKVERVEKTDAGGSGGRGRVVAHLSSGKKVVGDAMLYAMGRQGNTDSLSLGSVGLETDNRGLLEVNDFYQTSNPRVYACGDVIGYPALASTSMEQGRR 419
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: D7FKJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ5_ECTSI) HSP 1 Score: 204 bits (518), Expect = 1.240e-59 Identity = 108/157 (68.79%), Postives = 126/157 (80.25%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQ 471
RDLIVVGAGVIGMEYA MINV+PGTTVTV+DPR +VL FAD +V ++L Y+MR+ GARFLL EK+ VEK+ DG VVAH SGKRV GDALLY MGR GNTDSL+L ++G++ D RGLL V+D YQT+ VYACGD+IGYPALASTSMEQ
Sbjct: 235 RDLIVVGAGVIGMEYASMINVIPGTTVTVIDPRDEVLGFADREVTQALCYSMRKNGARFLLGEKVKSVEKMA---DGTV--VVAHLLSGKRVKGDALLYAMGRLGNTDSLNLEAIGVDPDERGLLNVDDSYQTAQAGVYACGDVIGYPALASTSMEQ 386
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: A0A5D6XJI3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJI3_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.530e-53 Identity = 94/159 (59.12%), Postives = 120/159 (75.47%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQVR 477
+ LIVVGAGVIGMEYA M+N++PG VT++D R ++L AD +V E+L Y+MRQ GARF + E + +VEK N E V+ H SGK +VGD LLYT+GRQGNT+ LDL +VGLEAD+RGL++V+D +QT P +YA GD IG+PALASTSMEQ R
Sbjct: 237 KRLIVVGAGVIGMEYASMMNIIPGMEVTIIDGRKEILDMADREVSEALCYSMRQSGARFFVEETIKRVEKAENGE------VIVHLNSGKSLVGDGLLYTLGRQGNTEGLDLSAVGLEADKRGLIQVDDDFQTVVPHIYAAGDCIGFPALASTSMEQGR 389
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: A0A485KXX4_9STRA (Aste57867_13244 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXX4_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.420e-52 Identity = 97/159 (61.01%), Postives = 119/159 (74.84%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQVR 477
+ LIVVGAGVIGMEYA MI+++PGT VTV+D R D+L AD +V ++L Y MRQ+G+RFL E + KVE K+D V+ H SGK +VGDALLYT GRQGN LDL +VGL A++RG+LEVN+ +QTS P +YA GD IGYPALASTSMEQ R
Sbjct: 243 KRLIVVGAGVIGMEYASMISIIPGTQVTVIDGRKDILDMADKEVSDALCYYMRQRGSRFLTEESIVKVE---TKQD--EREVIVHLSSGKTIVGDALLYTQGRQGNVAGLDLEAVGLAANKRGVLEVNNNFQTSVPHIYAAGDCIGYPALASTSMEQGR 396
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: F0VZ15_9STRA (Soluble pyridine nucleotide transhydrogenase putative n=2 Tax=Albugo TaxID=65356 RepID=F0VZ15_9STRA) HSP 1 Score: 182 bits (461), Expect = 1.110e-51 Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQVR 477
+ LIVVGAGVIGMEYA M++++PG VTV+D R ++L AD +V+E+L YAMRQ G+RF + E + VE + NK++ V+ H SGK VVGD LLYT+GRQGNT+ LDL ++GLE D+RGL++VN+ +QTS P +YA GD G+PALASTSMEQ R
Sbjct: 246 KRLIVVGAGVIGMEYASMMSIIPGAQVTVIDGRKEILEMADREVVEALTYAMRQTGSRFYMEETIKCVE-LSNKDE-----VITHLNSGKTVVGDGLLYTVGRQGNTEGLDLSAIGLETDKRGLIKVNENFQTSVPHIYAAGDCTGFPALASTSMEQGR 398
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: A0A8K1C723_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C723_PYTOL) HSP 1 Score: 181 bits (459), Expect = 2.200e-51 Identity = 92/159 (57.86%), Postives = 117/159 (73.58%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQVR 477
+ LIVVGAGVIGMEYA M++++PGT VTV+D R ++L AD +V E+L YAMRQ G RF E + VEK N E V+ SGK ++GD LLYT+GRQGNTDSL+L +VGL D+RGL++V+D ++T+ P +YA GD IGYPALASTSMEQ R
Sbjct: 241 KRLIVVGAGVIGMEYASMMSIIPGTEVTVIDGRKEILDMADKEVTEALSYAMRQTGTRFYTEETIKTVEKADNGE------VIVKLNSGKTIIGDGLLYTLGRQGNTDSLNLEAVGLTPDKRGLIQVDDNFRTAVPHIYAAGDCIGYPALASTSMEQGR 393
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: A0A024U3Q4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3Q4_9STRA) HSP 1 Score: 180 bits (457), Expect = 2.510e-51 Identity = 95/159 (59.75%), Postives = 119/159 (74.84%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQVR 477
+ LIVVGAGVIGMEYA MI+++PGT VTV+D R ++L AD +V ++L Y MRQ+G+RFL E + KVE K+D VV H SGK ++GDALLYT GRQGN LDL +VGL A++RG+LEVN+ +QT+ P +YA GD IGYPALASTSMEQ R
Sbjct: 235 KRLIVVGAGVIGMEYASMISIIPGTQVTVIDGRKEILDMADKEVSDALCYYMRQRGSRFLTEESILKVE---TKDDS---EVVVHLTSGKVIMGDALLYTQGRQGNVAGLDLEAVGLSANKRGILEVNNNFQTAVPHIYAAGDCIGYPALASTSMEQGR 387
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: A0A024U2X5_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024U2X5_9STRA) HSP 1 Score: 180 bits (457), Expect = 3.480e-51 Identity = 95/159 (59.75%), Postives = 119/159 (74.84%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQVR 477
+ LIVVGAGVIGMEYA MI+++PGT VTV+D R ++L AD +V ++L Y MRQ+G+RFL E + KVE K+D VV H SGK ++GDALLYT GRQGN LDL +VGL A++RG+LEVN+ +QT+ P +YA GD IGYPALASTSMEQ R
Sbjct: 235 KRLIVVGAGVIGMEYASMISIIPGTQVTVIDGRKEILDMADKEVSDALCYYMRQRGSRFLTEESILKVE---TKDDS---EVVVHLTSGKVIMGDALLYTQGRQGNVAGLDLEAVGLSANKRGILEVNNNFQTAVPHIYAAGDCIGYPALASTSMEQGR 387
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Match: A0A067C5I4_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C5I4_SAPPC) HSP 1 Score: 180 bits (457), Expect = 4.100e-51 Identity = 95/159 (59.75%), Postives = 119/159 (74.84%), Query Frame = 1
Query: 1 RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQGARFLLNEKLTKVEKVPNKEDGIRPRVVAHFESGKRVVGDALLYTMGRQGNTDSLDLRSVGLEADRRGLLEVNDFYQTSNPRVYACGDIIGYPALASTSMEQVR 477
+ LIVVGAGVIGMEYA MI+++PGT VTV+D R ++L AD +V ++L Y+MRQ+G RFL E + VEK ++++ VV H +SGK +VGDALLYT GRQGN LDL +VGLEA+ RG LEVN+ +QTS P +YA GD IGYPALAS SMEQ R
Sbjct: 242 KRLIVVGAGVIGMEYAAMISIIPGTQVTVIDGRKEILEMADKEVSDALCYSMRQRGTRFLTEETIDFVEKRLDEKE-----VVVHLKSGKIIVGDALLYTQGRQGNVTGLDLEAVGLEANNRGYLEVNNNFQTSVPHIYAAGDCIGYPALASVSMEQGR 395 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59783.13496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59783.13496.1 >prot_H-elongata_contig59783.13496.1 ID=prot_H-elongata_contig59783.13496.1|Name=mRNA_H-elongata_contig59783.13496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp RDLIVVGAGVIGMEYACMINVVPGTTVTVVDPRPDVLPFADGDVIESLQYback to top mRNA from alignment at H-elongata_contig59783:490..3289+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59783.13496.1 ID=mRNA_H-elongata_contig59783.13496.1|Name=mRNA_H-elongata_contig59783.13496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2800bp|location=Sequence derived from alignment at H-elongata_contig59783:490..3289+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59783:490..3289+ >mRNA_H-elongata_contig59783.13496.1 ID=mRNA_H-elongata_contig59783.13496.1|Name=mRNA_H-elongata_contig59783.13496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig59783:490..3289+ (Himanthalia elongata Himel1 dioecious)back to top |