mRNA_H-elongata_contig59765.13493.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59765.13493.1
Unique NamemRNA_H-elongata_contig59765.13493.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: D7G245_ECTSI (Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G245_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 3.320e-46
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    1 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPRGTIDPARPNSNHGGGGFCC 267
            VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKT+VG+KQVFEEVVQKILDNP LLANTAPGRPR T+DP+RPN N  GGG CC
Sbjct:  121 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCC 209
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: A0A4D9D7L4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7L4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.270e-30
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    1 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPRGTIDPARPNSNHGGGGFCC 267
            +VK+LVGNKVDKER+V R +AE +ARSKGMLFLEASAKTR GI+QVF EVVQKILDNP LL NTAPGRPR  ++     +  G GG+CC
Sbjct:  121 IVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR--VNLQADAAAKGSGGYCC 207
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: M4BML9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BML9_HYAAE)

HSP 1 Score: 110 bits (274), Expect = 6.360e-29
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPRGT-IDPARPNSNHGGGGFCC 267
            VVKLLVGNK+DK+R+V+R +AE++ARSKGMLF+E+SAKT++GI+QVF EVVQKIL+NP LL+NTAP R RG  +D     S  GGG  CC
Sbjct:   61 VVKLLVGNKIDKDRIVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RSRGRKLDGKAEKSGGGGGSGCC 149
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: D0NMU9_PHYIT (Rab18 family GTPase, putative n=6 Tax=Oomycota TaxID=4762 RepID=D0NMU9_PHYIT)

HSP 1 Score: 109 bits (273), Expect = 3.700e-28
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPRGTIDPARPNSNHGGGGFC 264
            VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKT++GI+QVF EVVQKIL+NP LL+NTAP R RG    A+   + GG G C
Sbjct:  116 VVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RSRGRKLDAKAEKSGGGNGCC 202
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: W2LN00_PHYPR (Uncharacterized protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LN00_PHYPR)

HSP 1 Score: 108 bits (269), Expect = 1.150e-27
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPRGTIDPARPNSNHGGGGFC 264
            VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKT++GI+QVF EVVQKIL+NP LL+NTAP R RG     +   + GG G C
Sbjct:  106 VVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RSRGRKLDGKAEKSGGGSGCC 192
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: A0A7S2XXK5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXK5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.320e-27
Identity = 54/87 (62.07%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    4 VKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPRGTIDPARPNSNHGGGGFC 264
            VKLLVGNK+DKER V++ +A+ +ARS+ M+F+EASAKT+VG+K VF EVVQKILDNPVLLA+T   +PRGT++P +  + + GGG C
Sbjct:   59 VKLLVGNKIDKERQVSKQEAQSWARSRNMIFMEASAKTKVGVKTVFSEVVQKILDNPVLLASTVQ-KPRGTVNPGQSTTANQGGGCC 144
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: A0A067C8B0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8B0_SAPPC)

HSP 1 Score: 108 bits (269), Expect = 1.850e-27
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    1 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPRG-----TIDPARPNSNHGGGGFCC 267
            VVKLLVGNK+DKERVV+R + E +ARSKGMLF+E+SAKT++GI+QVF EVVQKILDNP LLANTAP R R      + D   P++N GGG  CC
Sbjct:  121 VVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAP-RSRAKKVNLSADKYAPHANAGGG--CC 211
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: A0A6A3N672_9STRA (Uncharacterized protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3N672_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.370e-27
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPRGTIDPARPNSNHGGGGFC 264
            VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKT++GI+QVF EVVQKIL+NP LL+NTAP R RG     +   + GG G C
Sbjct:  156 VVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RNRGRKLDGKAEKSGGGSGCC 242
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: A0A6G0KMK3_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A6G0KMK3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 7.760e-27
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPRGTIDPARPNSNHGGGGFC 264
            VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKT++GI+QVF EVVQKIL+NP LL+NTAP R RG     +   + GG G C
Sbjct:  173 VVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RNRGRKLDGKAEKSGGGSGCC 259
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BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Match: W7UBM5_9STRA (Rab family gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBM5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.020e-26
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEVVQKILDNPVLLANTAPGRPR 210
            +VK+LVGNKVDKER+V R +AE +ARSKGMLFLEASAKTR GI+QVF EVVQKILDNP LL NTAPGRPR
Sbjct:  177 IVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59765.13493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G245_ECTSI3.320e-4688.76Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A4D9D7L4_9STRA3.270e-3069.66Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
M4BML9_HYAAE6.360e-2965.56Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
D0NMU9_PHYIT3.700e-2867.05Rab18 family GTPase, putative n=6 Tax=Oomycota Tax... [more]
W2LN00_PHYPR1.150e-2765.91Uncharacterized protein n=14 Tax=Phytophthora para... [more]
A0A7S2XXK5_9STRA1.320e-2762.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067C8B0_SAPPC1.850e-2765.96Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A6A3N672_9STRA5.370e-2765.91Uncharacterized protein n=21 Tax=Peronosporaceae T... [more]
A0A6G0KMK3_9STRA7.760e-2765.91Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]
W7UBM5_9STRA2.020e-2681.43Rab family gtpase n=1 Tax=Nannochloropsis gaditana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59765contigH-elongata_contig59765:184..885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue4.5e-37
Seed eggNOG ortholog2880.D7G245
Preferred nameRAB18
KEGG koko:K07910,ko:K07976,ko:K17506
GOsGO:0000166,GO:0001654,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006887,GO:0006913,GO:0006955,GO:0006996,GO:0007029,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008092,GO:0008150,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017022,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0023052,GO:0030141,GO:0030659,GO:0030667,GO:0030742,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032029,GO:0032036,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0034389,GO:0035556,GO:0036094,GO:0036230,GO:0042119,GO:0042175,GO:0042579,GO:0043009,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0046907,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060322,GO:0065007,GO:0071782,GO:0071786,GO:0071840,GO:0071944,GO:0080115,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:1901265,GO:1901363
EggNOG free text desc.myosin XI tail binding
EggNOG OGsKOG0080@1,KOG0080@2759
EC3.1.3.16
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab18, RAB family GTPase
Ec32 orthologEc-09_003840.1
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.2600477-CDS-H-elongata_contig59765:183..2901622930967.2600477-CDS-H-elongata_contig59765:183..290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59765 184..290 +
1691679643.8181396-CDS-H-elongata_contig59765:183..2901691679643.8181396-CDS-H-elongata_contig59765:183..290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59765 184..290 +
1622930967.2791545-CDS-H-elongata_contig59765:719..8851622930967.2791545-CDS-H-elongata_contig59765:719..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59765 720..885 +
1691679643.8310363-CDS-H-elongata_contig59765:719..8851691679643.8310363-CDS-H-elongata_contig59765:719..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59765 720..885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59765.13493.1prot_H-elongata_contig59765.13493.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59765 184..885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59765.13493.1

>prot_H-elongata_contig59765.13493.1 ID=prot_H-elongata_contig59765.13493.1|Name=mRNA_H-elongata_contig59765.13493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
VVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTRVGIKQVFEEV
VQKILDNPVLLANTAPGRPRGTIDPARPNSNHGGGGFCCT*
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mRNA from alignment at H-elongata_contig59765:184..885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59765.13493.1 ID=mRNA_H-elongata_contig59765.13493.1|Name=mRNA_H-elongata_contig59765.13493.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=702bp|location=Sequence derived from alignment at H-elongata_contig59765:184..885+ (Himanthalia elongata Himel1 dioecious)
GTTGTCAAGCTCCTTGTGGGTAATAAAGTGGACAAGGAAAGAGTAGTGAC
ACGCGCGCAAGCGGAAGAATACGCGCGCAGCAAGGGCATGCTCTTCTTGG
AGGCTAGGTGCGCGCATATTGACGTAGCGCTCCACGACGAAAAGTTGTCT
CCTTTATAAAAGCAACCCGGAACGGCCGGGGGGGGTCCAGAAAGTTTTCA
ATTTGATACGATATGAAAAGCGGTTCTGCCGTCATGTCGCTCCGTACACC
GGGGGGGGGGGGGGGGGCTCTAACGGTGCCATANNNNNNNNNNGTTATTT
TGATTTGTCTGATTTTAGGTGTAGTAGTGGTGTGTTGCCGGCGTCGGGGT
GGGGGGGGGGGGGGGGGGGGGGGGGGCTCTAACGGTGCCATATACCAACG
AGGGCACATGTCAACCTGCTGCGCCTCGTTCTGCCAAGAGAAGGAATACG
TGAGACGTTTACCGATGGGATGTTTTTTTTACACCCCTCCACCTCCCATT
GTCATTGCCCTTGGCCTCTCAAATCACTATTCGCAGCGCGAAGACTAGGG
TCGGAATCAAGCAAGTATTCGAGGAAGTTGTGCAGAAGATTCTGGATAAC
CCCGTCCTGCTCGCGAACACCGCGCCCGGGCGGCCGCGAGGCACGATCGA
CCCCGCCAGACCCAACAGTAACCACGGGGGAGGGGGGTTCTGTTGCACTT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig59765:184..885+

>mRNA_H-elongata_contig59765.13493.1 ID=mRNA_H-elongata_contig59765.13493.1|Name=mRNA_H-elongata_contig59765.13493.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig59765:184..885+ (Himanthalia elongata Himel1 dioecious)
GTTGTCAAGCTCCTTGTGGGTAATAAAGTGGACAAGGAAAGAGTAGTGAC
ACGCGCGCAAGCGGAAGAATACGCGCGCAGCAAGGGCATGCTCTTCTTGG
AGGCTAGGTTGTCAAGCTCCTTGTGGGTAATAAAGTGGACAAGGAAAGAG
TAGTGACACGCGCGCAAGCGGAAGAATACGCGCGCAGCAAGGGCATGCTC
TTCTTGGAGGCTAGCGCGAAGACTAGGGTCGGAATCAAGCAAGTATTCGA
GGAAGTTGTGCAGAAGATTCTGGATAACCCCGTCCTGCTCGCGAACACCG
CGCCCGGGCGGCCGCGAGGCACGATCGACCCCGCCAGACCCAACAGTAAC
CACGGGGGAGGGGGGTTCTGTTGCACTTGACGCGAAGACTAGGGTCGGAA
TCAAGCAAGTATTCGAGGAAGTTGTGCAGAAGATTCTGGATAACCCCGTC
CTGCTCGCGAACACCGCGCCCGGGCGGCCGCGAGGCACGATCGACCCCGC
CAGACCCAACAGTAACCACGGGGGAGGGGGGTTCTGTTGCACTTGA
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