mRNA_H-elongata_contig59737.13491.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59737.13491.1
Unique NamemRNA_H-elongata_contig59737.13491.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59737.13491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59737contigH-elongata_contig59737:210..629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.074793-CDS-H-elongata_contig59737:209..6291622930967.074793-CDS-H-elongata_contig59737:209..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59737 210..629 +
1691679643.766949-CDS-H-elongata_contig59737:209..6291691679643.766949-CDS-H-elongata_contig59737:209..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59737 210..629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59737.13491.1prot_H-elongata_contig59737.13491.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59737 210..629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59737.13491.1

>prot_H-elongata_contig59737.13491.1 ID=prot_H-elongata_contig59737.13491.1|Name=mRNA_H-elongata_contig59737.13491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MYVGLFCMAFRYKSAQRNYRWDGYLCSHVSCIKKIAQGACCIMFVVLAAN
PSIAFSEIENLIIIETSTSAQRDMFRGDHRAKERERDGNTRPSCGGSYSV
LAAVLKLSRGENAQKIGQQRPHSTPSMLVRSVLGRGGSNG
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mRNA from alignment at H-elongata_contig59737:210..629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59737.13491.1 ID=mRNA_H-elongata_contig59737.13491.1|Name=mRNA_H-elongata_contig59737.13491.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig59737:210..629+ (Himanthalia elongata Himel1 dioecious)
ATGTACGTAGGGTTATTTTGTATGGCTTTTAGATATAAGTCTGCCCAGCG
CAATTATCGATGGGATGGCTACCTGTGTTCCCACGTATCTTGCATTAAAA
AAATCGCTCAAGGAGCTTGCTGTATCATGTTCGTGGTCCTTGCCGCTAAT
CCCAGCATCGCTTTTTCCGAGATCGAAAATCTCATAATTATCGAGACAAG
CACATCCGCTCAACGTGACATGTTCCGCGGAGACCATAGAGCAAAGGAAA
GAGAGCGGGATGGCAACACAAGACCGAGCTGTGGAGGAAGCTACAGCGTC
CTCGCAGCCGTCTTGAAGCTCAGTCGAGGAGAAAATGCGCAAAAAATAGG
ACAGCAACGGCCGCATAGCACACCATCGATGCTTGTCAGGAGTGTGCTCG
GTCGGGGCGGCAGCAACGGC
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Coding sequence (CDS) from alignment at H-elongata_contig59737:210..629+

>mRNA_H-elongata_contig59737.13491.1 ID=mRNA_H-elongata_contig59737.13491.1|Name=mRNA_H-elongata_contig59737.13491.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig59737:210..629+ (Himanthalia elongata Himel1 dioecious)
ATGTACGTAGGGTTATTTTGTATGGCTTTTAGATATAAGTCTGCCCAGCG
CAATTATCGATGGGATGGCTACCTGTGTTCCCACGTATCTTGCATTAAAA
AAATCGCTCAAGGAGCTTGCTGTATCATGTTCGTGGTCCTTGCCGCTAAT
CCCAGCATCGCTTTTTCCGAGATCGAAAATCTCATAATTATCGAGACAAG
CACATCCGCTCAACGTGACATGTTCCGCGGAGACCATAGAGCAAAGGAAA
GAGAGCGGGATGGCAACACAAGACCGAGCTGTGGAGGAAGCTACAGCGTC
CTCGCAGCCGTCTTGAAGCTCAGTCGAGGAGAAAATGCGCAAAAAATAGG
ACAGCAACGGCCGCATAGCACACCATCGATGCTTGTCAGGAGTGTGCTCG
GTCGGGGCGGCAGCAACGGCATGTACGTAGGGTTATTTTGTATGGCTTTT
AGATATAAGTCTGCCCAGCGCAATTATCGATGGGATGGCTACCTGTGTTC
CCACGTATCTTGCATTAAAAAAATCGCTCAAGGAGCTTGCTGTATCATGT
TCGTGGTCCTTGCCGCTAATCCCAGCATCGCTTTTTCCGAGATCGAAAAT
CTCATAATTATCGAGACAAGCACATCCGCTCAACGTGACATGTTCCGCGG
AGACCATAGAGCAAAGGAAAGAGAGCGGGATGGCAACACAAGACCGAGCT
GTGGAGGAAGCTACAGCGTCCTCGCAGCCGTCTTGAAGCTCAGTCGAGGA
GAAAATGCGCAAAAAATAGGACAGCAACGGCCGCATAGCACACCATCGAT
GCTTGTCAGGAGTGTGCTCGGTCGGGGCGGCAGCAACGGC
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