mRNA_H-elongata_contig59732.13490.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: D8LBI9_ECTSI (Fimbrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI9_ECTSI) HSP 1 Score: 291 bits (746), Expect = 9.850e-91 Identity = 147/172 (85.47%), Postives = 157/172 (91.28%), Query Frame = 1
Query: 1 VSKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLSKKGKRIDDPQIVAWANSKVEGSKIRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLWHCENERTVS---GGAAVGPS 507
++KVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQ+LSKKGKRI+DPQIVAWANSKVEGSKIRSF DPSLSTGVFLLKVCHGID+S VNWDLV M+P + ED K NNAKYAISVARKLGACVFVA+EDIVQV S+MIMLFCASLWHCENERT S GGA P+
Sbjct: 532 IAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQALSKKGKRIEDPQIVAWANSKVEGSKIRSFGDPSLSTGVFLLKVCHGIDQSTVNWDLVVMDPANDED-KTNNAKYAISVARKLGACVFVAAEDIVQVMSRMIMLFCASLWHCENERTASPDGGGAGAMPA 702
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: A0A6H5JJ18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ18_9PHAE) HSP 1 Score: 267 bits (683), Expect = 6.440e-82 Identity = 138/167 (82.63%), Postives = 147/167 (88.02%), Query Frame = 1
Query: 1 VSKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQS------LSKKGKRIDDPQIVAWANSKVEGSKIRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLWHCENERTVS 483
++KVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQ+ LSKKGKRI+DPQIVAWANSKVEGSKIRSF DPSLSTGV CHGID+S VNWDLV M+P + ED K NNAKYAISVARKLGACVFVA+EDIVQV S+MIMLFCASLWHCENERT S
Sbjct: 479 IAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQARDGGAALSKKGKRIEDPQIVAWANSKVEGSKIRSFGDPSLSTGV-----CHGIDQSTVNWDLVVMDPANDED-KTNNAKYAISVARKLGACVFVAAEDIVQVMSRMIMLFCASLWHCENERTAS 639
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: A0A835YV37_9STRA (Actin bundling protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV37_9STRA) HSP 1 Score: 245 bits (626), Expect = 6.840e-75 Identity = 125/163 (76.69%), Postives = 140/163 (85.89%), Query Frame = 1
Query: 4 SKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLSKKG-KRIDDPQIVAWANSKVEGSKIRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLWHCENERTVSGG 489
+K M LTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQ LS G KRI+DP++V WANSKV G+KIRSF+DPSLS+GVFLL+VCHGIDR VV+W+LV + S ED K NNAKYAISVARKLGA VFVASEDIV+V+ +MIMLFCASLWH EN R + G
Sbjct: 467 AKAMQLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQHLSTTGTKRIEDPEVVKWANSKVAGAKIRSFSDPSLSSGVFLLQVCHGIDRGVVDWELVVTDAQSTED-KTNNAKYAISVARKLGALVFVASEDIVEVRGRMIMLFCASLWHAENARKAANG 628
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: A0A836CF36_9STRA (Actin binding protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF36_9STRA) HSP 1 Score: 240 bits (613), Expect = 2.080e-73 Identity = 118/158 (74.68%), Postives = 141/158 (89.24%), Query Frame = 1
Query: 1 VSKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLS-KKGKRIDDPQIVAWANSKVEGSKIRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLWHCENE 471
++K M LTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQ LS K K+I+DP+IV WANSK G KI+SFADPSL++GVFLLKVCHG+++ VVNW+LV MEP + + D++NNAKYAISVARK+GA VFVA+EDIV+V+S+MIMLFCASLWH +N+
Sbjct: 462 IAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSKSAGMKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTT-QTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADNQ 618
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: A0A7S2CPJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPJ7_9STRA) HSP 1 Score: 172 bits (435), Expect = 4.540e-49 Identity = 86/167 (51.50%), Postives = 121/167 (72.46%), Query Frame = 1
Query: 13 MGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLSKKGKRIDDPQIVAWANSKV----EGSKIRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLWHCENERTVSGGAAVG 501
M L +VN+GG+DI DGN+K+ LAIMWQLMR+ TL++L++LS G I + Q+V WAN+ V + ++IR+ +D SLSTG FL+ +C + + V+W++VT PG+ EDDKL+NAKY IS+ARK+GACVF+ EDIV++K KMI F +LW +SGGA+ G
Sbjct: 155 MDLVLVNIGGVDIADGNKKLILAIMWQLMRQFTLDMLKNLSGDGTSITEDQMVQWANNTVAQSGKATQIRNLSDSSLSTGAFLIDLCAAVAPNAVDWEIVT--PGANEDDKLSNAKYCISIARKIGACVFLTPEDIVEIKPKMIFTFIGALWTTH----LSGGASAG 315
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: A0A7S2S2Z4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2Z4_9STRA) HSP 1 Score: 169 bits (428), Expect = 8.140e-46 Identity = 87/169 (51.48%), Postives = 118/169 (69.82%), Query Frame = 1
Query: 7 KVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLSKKGKRIDDPQIVAWANSKVEGS-----KIRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLWHCENERTVSGGAAV 498
K M L +VN+GG DI D N+K+ LAIMWQLMR TL ++ LS G +I D Q+VAWAN+KV + IR+ D SL+TG FL+++C ++ + V+W+LVT G ++D+++NA+YAIS+ARKLGACVF+ EDIV+VK KM+ F ASLW E E TV+ G A
Sbjct: 481 KKMDLVLVNIGGPDIADKNKKLILAIMWQLMRLFTLKMVAQLSGDGTKITDKQVVAWANNKVASAGRSSLSIRNLHDSSLATGQFLIELCGAVNPNTVDWELVTA--GETQEDQISNARYAISIARKLGACVFLTPEDIVEVKPKMLFTFIASLWTAELEGTVATGGAA 647
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: F0YB19_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB19_AURAN) HSP 1 Score: 164 bits (415), Expect = 9.110e-44 Identity = 83/166 (50.00%), Postives = 115/166 (69.28%), Query Frame = 1
Query: 13 MGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLSKKGKRIDDPQIVAWANSKVE-----GSK--IRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLWHCENERTVSGG 489
M L +VN+GG+DI DGN+K+ LA+MWQLMR+ T+++L SL G + +P+++AWAN+KV GSK I+S D ++ FLL++C + VVNW+LV PG G DD+ +NAKYA+SVARKLGA VF EDIV+VK KM++LF A++W E +GG
Sbjct: 1305 MDLVLVNIGGVDIADGNKKLILAVMWQLMRQQTIDMLSSLKGDGTAVAEPELIAWANAKVAASPRPGSKKPIKSLNDKYIAKATFLLELCDAVGGGVVNWELVA--PGDGGDDRHSNAKYALSVARKLGARVFCTPEDIVEVKPKMMLLFIAAVWQAELSGATTGG 1468
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: A0A812Z4F6_SYMMI (FIM4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z4F6_SYMMI) HSP 1 Score: 150 bits (380), Expect = 3.040e-43 Identity = 74/158 (46.84%), Postives = 109/158 (68.99%), Query Frame = 1
Query: 1 VSKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLSKKG--KRIDDPQIVAWANSKVEGS----KIRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLW 456
+ K MG ++VN+GGLDI+D +K+ LAI+WQLMR++TL +L L+ + + Q++ WAN KV S +R+F D SL G F L + + I+ VNW+LVT G ++++++NAKY+IS+ARK+GACVF+ EDIV+VKSKM+M F + LW
Sbjct: 21 IGKQMGFSMVNIGGLDIVDKQKKLILAIIWQLMRKYTLLVLAQLASHSGVTEVSEEQVINWANQKVASSGKTSTMRNFKDQSLKNGTFFLDLVNAIEPRAVNWELVTA--GGTDEERMSNAKYSISIARKIGACVFLTPEDIVEVKSKMLMTFVSGLW 176
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: A0A812VU38_SYMMI (FIM3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VU38_SYMMI) HSP 1 Score: 155 bits (393), Expect = 2.480e-42 Identity = 79/158 (50.00%), Postives = 113/158 (71.52%), Query Frame = 1
Query: 1 VSKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLSKKG--KRIDDPQIVAWANSKV----EGSKIRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLW 456
+ + MG ++VN+GGLDI+ ++K+ LAI+WQLMRRHTL +L +L+ + + I+ WANS+V + S +++F D SL TGVFLL + ++ VNWDLVT G +DD+L+NAKY ISV++K+GACVF+ EDIV+VKSKMIM F +S+W
Sbjct: 297 IGRSMGFSMVNIGGLDIVHKDKKLILAIIWQLMRRHTLKVLAALAAHEGLTEVTEEHIIHWANSRVARSGKTSTMQNFKDHSLKTGVFLLDLVAAVEPRAVNWDLVTT--GENDDDQLSNAKYCISVSQKIGACVFLTPEDIVEVKSKMIMTFVSSIW 452
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Match: A0A0D2WVJ4_CAPO3 (Fimbrin n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WVJ4_CAPO3) HSP 1 Score: 150 bits (379), Expect = 2.130e-39 Identity = 74/157 (47.13%), Postives = 113/157 (71.97%), Query Frame = 1
Query: 1 VSKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLSKKGKRIDDPQIVAWANSKVE----GSKIRSFADPSLSTGVFLLKVCHGIDRSVVNWDLVTMEPGSGEDDKLNNAKYAISVARKLGACVFVASEDIVQVKSKMIMLFCASLWH 459
V K + ++V VGG DI DGN+ +TLA++WQ+MR H L++L+S+SK G+ I + ++VAWAN+ V+ S + SF DP L++ +F L + +GI + +VN+D+V GS + ++ +NAKY+IS+ARKLGAC+FV EDI++VK KMI+ F +L H
Sbjct: 466 VGKSLKFSLVGVGGQDIEDGNKTLTLALVWQMMRFHVLSILKSISKDGRDISEDEMVAWANNTVKKGGRDSVMDSFKDPKLASSIFFLDLMNGIKKGIVNYDIVAA--GSDDAERKSNAKYSISIARKLGACIFVLPEDIMEVKPKMILTFVGALMH 620 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59732.13490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59732.13490.1 >prot_H-elongata_contig59732.13490.1 ID=prot_H-elongata_contig59732.13490.1|Name=mRNA_H-elongata_contig59732.13490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp MGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQSLSKKGKRIDDPback to top mRNA from alignment at H-elongata_contig59732:287..2542+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59732.13490.1 ID=mRNA_H-elongata_contig59732.13490.1|Name=mRNA_H-elongata_contig59732.13490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2256bp|location=Sequence derived from alignment at H-elongata_contig59732:287..2542+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59732:287..2542+ >mRNA_H-elongata_contig59732.13490.1 ID=mRNA_H-elongata_contig59732.13490.1|Name=mRNA_H-elongata_contig59732.13490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig59732:287..2542+ (Himanthalia elongata Himel1 dioecious)back to top |