mRNA_H-elongata_contig59729.13489.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59729.13489.1
Unique NamemRNA_H-elongata_contig59729.13489.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: D7FS51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS51_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.680e-50
Identity = 78/98 (79.59%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:    1 QRTGFSTLRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 294
            QR G STLRRG+TGP+SA+ RLPMRGLE+FRDP+ VKAGDVPIVGR WTVPELR+KSFEDLHKLWFVLYKEKNMLM+++ +SRR+K  +PAGDRRQKV
Sbjct:   63 QRAGLSTLRRGLTGPLSARLRLPMRGLEEFRDPEVVKAGDVPIVGRSWTVPELRRKSFEDLHKLWFVLYKEKNMLMSQVVLSRRSKVPIPAGDRRQKV 160
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A6H5KQ57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ57_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.540e-33
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 QRTGFSTLRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLW 195
            QR G STLRRG+TGP+SA+ RLPMRGLE+FRDP+ VKAGDVPIVGR WTVPELR+KSFEDLHKLW
Sbjct:   63 QRAGLSTLRRGLTGPLSARLRLPMRGLEEFRDPEVVKAGDVPIVGRSWTVPELRRKSFEDLHKLW 127
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A835YLR8_9STRA (Mitochondrial 39-S ribosomal protein L47 (MRP-L47)-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.950e-27
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:   22 LRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKAL-LPAGDRRQKV 294
            LRRG  GP SA  RLP RGLE+F D DT +  D PI GR WTV ELR+KSF+DLHKLW+VLYKEKN+L+TE  ++RR     L A DR +KV
Sbjct:    9 LRRGAVGPASAASRLPRRGLEEFIDNDTRRGAD-PIAGRAWTVTELRQKSFDDLHKLWWVLYKEKNLLLTEKLVTRRKGGNELRAPDRAKKV 99
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A7S2MMC9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MMC9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.220e-18
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   40 GPISAKQRLPMRG---LEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 294
            G  S   ++P  G   L+ FRD  T +A    +VGR WTV ELR+KSFEDLH LWFVLYKE NML+TE  +SRR   + P  DR++KV
Sbjct:  135 GAESTDGKVPNHGNSPLDAFRDSVTREARAKEMVGRSWTVKELRRKSFEDLHSLWFVLYKEWNMLLTEANLSRRKGIVFPQPDRKRKV 222
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A7S2UD47_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD47_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.510e-18
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   10 GFSTLRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 294
            GF++     T   +A        L+ F DP   +A    +VGR W+V ELR+KSF+DLH+LWFVLY+E+NML+TE A  RR    LP  DRR KV
Sbjct:   42 GFASTSGSTTNTFAASP------LDAFMDPAAYEARQTEMVGRAWSVRELRRKSFDDLHRLWFVLYQERNMLLTEAAKCRRKGMYLPQPDRRHKV 130
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A448Z5R2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5R2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.880e-18
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:   10 GFSTLRRGITGPI--------SAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 294
            GFS  R G + P+        ++K+      L+ FRDP          VGR W+  ELR+KS+EDLH+LW+VLYKEKNML+TE  +SRR + + P  +R +KV
Sbjct:   43 GFSENRTGHSSPLRSYSSTRTTSKREYKPNPLDAFRDPVDRSTRMEQTVGRQWSAKELRRKSYEDLHRLWYVLYKEKNMLLTEQQLSRRRQLIFPQPERFKKV 145
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A6U3P2T2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3P2T2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.450e-17
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:   49 SAKQRLPMRG---LEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 294
            S + ++P  G   L+ FRD  T  A    +VGR WTV ELR+KSF+DLH LWFVLYKE NML+TE  +SRR   + P  +R+ KV
Sbjct:   54 STEGKIPNHGSSPLDAFRDSVTRDARMNELVGRSWTVKELRRKSFDDLHSLWFVLYKEYNMLLTEANLSRRKGLVFPQPERKVKV 138
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A7S4ALY4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALY4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.080e-17
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   37 TGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 294
            T   SA++  P   L+ FRDP   +      VGR W+V ELR+KS+EDLH+LW+VLYKEKNML+TE  +SRR + + P  DR +KV
Sbjct:   68 TAVSSAREYKPSP-LDAFRDPVGRQTRMEQPVGRQWSVKELRRKSYEDLHRLWYVLYKEKNMLLTEQQLSRRRQLIFPQPDRFKKV 152
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A1E7FV10_9STRA (MRP-L47-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV10_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.170e-16
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:  127 IVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 294
            IVGR W+V ELR+KS+EDLH+LW+VLYKEKNML+TE  +SRR + + P  +R +KV
Sbjct:    1 IVGRQWSVTELRRKSYEDLHRLWYVLYKEKNMLLTEQQLSRRRQLIFPQPERFKKV 56
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BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A7S3PBB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBB6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.410e-16
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   79 LEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 294
            L++FRD  + +      VGR W+  ELR+KSFEDLHKLW VLYKE+NML+TE  ISRR + + P  +R QKV
Sbjct:   48 LDEFRDTVSRQDRMAERVGRSWSAKELRRKSFEDLHKLWLVLYKERNMLLTEQQISRRKQIIFPQPNRFQKV 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS51_ECTSI1.680e-5079.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ57_9PHAE3.540e-3383.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLR8_9STRA7.950e-2761.96Mitochondrial 39-S ribosomal protein L47 (MRP-L47)... [more]
A0A7S2MMC9_9STRA2.220e-1853.41Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2UD47_9STRA2.510e-1847.37Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448Z5R2_9STRA4.880e-1843.69Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6U3P2T2_9STRA2.450e-1751.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4ALY4_9STRA4.080e-1751.16Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FV10_9STRA1.170e-1662.50MRP-L47-domain-containing protein (Fragment) n=1 T... [more]
A0A7S3PBB6_9STRA1.410e-1655.56Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59729contigH-elongata_contig59729:1936..3584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue4.7e-40
Seed eggNOG ortholog2880.D7FS51
Preferred nameMRPL47
KEGG koko:K17428
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG3331@1,KOG3331@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L47, mitochondrial
Ec32 orthologEc-16_004340.1
Exons3
Model size294
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59729.13489.1prot_H-elongata_contig59729.13489.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59729 1936..3584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.8185968-CDS-H-elongata_contig59729:1935..20461622930966.8185968-CDS-H-elongata_contig59729:1935..2046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59729 1936..2046 +
1691679643.692908-CDS-H-elongata_contig59729:1935..20461691679643.692908-CDS-H-elongata_contig59729:1935..2046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59729 1936..2046 +
1622930966.8332705-CDS-H-elongata_contig59729:2618..27011622930966.8332705-CDS-H-elongata_contig59729:2618..2701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59729 2619..2701 +
1691679643.7094526-CDS-H-elongata_contig59729:2618..27011691679643.7094526-CDS-H-elongata_contig59729:2618..2701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59729 2619..2701 +
1622930966.8498626-CDS-H-elongata_contig59729:3484..35841622930966.8498626-CDS-H-elongata_contig59729:3484..3584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59729 3485..3584 +
1691679643.7172904-CDS-H-elongata_contig59729:3484..35841691679643.7172904-CDS-H-elongata_contig59729:3484..3584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59729 3485..3584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59729.13489.1

>prot_H-elongata_contig59729.13489.1 ID=prot_H-elongata_contig59729.13489.1|Name=mRNA_H-elongata_contig59729.13489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
QRTGFSTLRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTV
PELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV
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mRNA from alignment at H-elongata_contig59729:1936..3584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59729.13489.1 ID=mRNA_H-elongata_contig59729.13489.1|Name=mRNA_H-elongata_contig59729.13489.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1649bp|location=Sequence derived from alignment at H-elongata_contig59729:1936..3584+ (Himanthalia elongata Himel1 dioecious)
CAGCGGACAGGATTCTCGACCCTGCGAAGAGGGATTACAGGACCTATATC
AGCGAAGCAGCGGCTTCCAATGCGAGGTCTTGAAGATTTCCGCGATCCAG
ACACGGTTAAGGTATACAGCAAGATCCCACCAAACGATTCCTGCTATAAT
ATTATAATCGAAGGGACAACAATGGAGCACTGTCAGGACTTTTTATTAAA
AAACATACTAATACTATAAATCATTGAGGCCCTTCCAACATACCAGGTAC
ACGCCTTCTTGACACCATGTTGAACATACTTGTATATTTTTTGCTCAAGA
GTTTGGCCAGGACCGCTCCTGGCCAGATCACGAGCAACCGAACATAAAGC
AGGCTGTGTGATTTTCTTCACAAAATACCAACCAAAATGGAACGAGATAG
AAATAAACATGACGCGGTGGTAGCGGATAGCGAATACATCCATCCCCATC
CCACGTAGTGCAACAGACCCTAAGGTGCACGTTTAGACTACTGGAAGGTT
AGTAAAAAACAATCACGCTGTACTGCACGGCAGCCACAGACGTTAAGAGG
TCATGTGAAGATCTCAATTCTCTCAGTTGTCGAGCCGGGCGGTCTGGTGT
TAACAAGACTGGTGTCGTTGCATCGCTTGCCGTATAATAGTTTGTCGCCA
TTCCGTCGCTTTTTTTACTTTGATCGTTGGTAGGCTGGTGATGTCCCCAT
TGTGGGGAGACCCTGGACAGTACCGGAGCTGCGGAAAAAGAGCTTCGAAG
ACCTTCACAAGCTTTGGTGAGGAACGCTGTCCCGATGGTACTCTTGCATT
TGCTATAAGTGGAGAACGAAGGGACATAGGTCCATATTTGGATAGAGACG
TCGAACCACCGCTACTGCTCGTCCCGAAATGGGCAAGAACTTCTGTGTAC
CATGCCGTAGCGCTTAAGTGTGCTAAGCTGAAAGTTTAGCAAATGAGCTG
CTGCGCAAAATGACGCAGTTTGCAAGCATAAACAACTGAAGTCCCAATAA
CCAACAACAGCTGTTTCGTGCGCGAAACCTGAACGCCCTACCCACGTGAA
GATGCCAAACCTCGAGACTCGACAGGCAACCCAAATGAGCTGACCTCCTG
TCTCATAACAAGACAGAAGACACGAAGCCGACTCGAGTTTTACTTCGCCT
GACAGATCGCATATGTGTCCCCGAGTCCATATTATTCTTAAAAAAACATA
TGAACTCATTCAAGCCCTCCTAATATCCACACCTTCTTTTAACACCATCC
ACGGTGAAGTTCAGGGGACTATGACCAACTAGATCGTCAGGTCCGAGTGT
GTCCATTACTATTACTACCTATGAGCACAAAACCGTCACCTGTGATTAAT
CGGGTTCCCCAATAAAATAATATCGGGTCAACAGTATAACCCTTCTACTA
CTATGTAAAGGAAAAATAATGCCAACACAGAAATGACCACTGTAGTATCA
CGTCACCTGTCCACTTTCTCACGGAGAAACCAATCAACGAGGCGCCGTAT
GCACACCCTACACTCTCTTGCTTATATTCCGTAATGGTTATTTGCTCAGG
TTTGTCTTGTACAAGGAGAAAAACATGCTGATGACGGAGCTCGCGATCAG
TCGAAGGACCAAGGCGCTTCTGCCCGCAGGAGACCGCCGACAAAAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig59729:1936..3584+

>mRNA_H-elongata_contig59729.13489.1 ID=mRNA_H-elongata_contig59729.13489.1|Name=mRNA_H-elongata_contig59729.13489.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig59729:1936..3584+ (Himanthalia elongata Himel1 dioecious)
CAGCGGACAGGATTCTCGACCCTGCGAAGAGGGATTACAGGACCTATATC
AGCGAAGCAGCGGCTTCCAATGCGAGGTCTTGAAGATTTCCGCGATCCAG
ACACGGTTAAGCAGCGGACAGGATTCTCGACCCTGCGAAGAGGGATTACA
GGACCTATATCAGCGAAGCAGCGGCTTCCAATGCGAGGTCTTGAAGATTT
CCGCGATCCAGACACGGTTAAGGCTGGTGATGTCCCCATTGTGGGGAGAC
CCTGGACAGTACCGGAGCTGCGGAAAAAGAGCTTCGAAGACCTTCACAAG
CTTTGGCTGGTGATGTCCCCATTGTGGGGAGACCCTGGACAGTACCGGAG
CTGCGGAAAAAGAGCTTCGAAGACCTTCACAAGCTTTGGTTTGTCTTGTA
CAAGGAGAAAAACATGCTGATGACGGAGCTCGCGATCAGTCGAAGGACCA
AGGCGCTTCTGCCCGCAGGAGACCGCCGACAAAAGGTTGTTTGTCTTGTA
CAAGGAGAAAAACATGCTGATGACGGAGCTCGCGATCAGTCGAAGGACCA
AGGCGCTTCTGCCCGCAGGAGACCGCCGACAAAAGGTT
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