mRNA_H-elongata_contig59698.13488.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A6H5KSK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK1_9PHAE) HSP 1 Score: 176 bits (447), Expect = 5.860e-50 Identity = 106/204 (51.96%), Postives = 120/204 (58.82%), Query Frame = 1
Query: 1 QGCTLDFFTTRDLTEYDEARTSMAKYMWRRNNGSHNRKQSLCSPVGAEQKQPSVS-----ADERKTALYH------------------WSERHVSIVQNTIFQTLARLAMDALAAYRSGQENANISDSPRHAIAVRYRPATSPFLFNEQYVVKPPKSSIKFGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
+GC LDFFT +L E DEARTSMAKYM RRN R G PSV D R + W+ERH+S+V++TIF TLA LA DAL A RS A+ D+ R+ A LFNEQYVVKPP+SSI+FGWHTDEREQLAMC+F G PPVYVSVWLALDDCDA NGCLEV
Sbjct: 48 KGCALDFFTNNELPEDDEARTSMAKYMSRRNGRRRRR------TPGGNDLHPSVEKAPPPGDSRGASRDSSGTMSGLSTTSPSCGGGGWTERHLSVVRDTIFGTLAALAWDALKAERSAA--ADEDDALRNPDASGAGDRGELLLFNEQYVVKPPRSSIEFGWHTDEREQLAMCVFAPGAGPPVYVSVWLALDDCDAVNGCLEV 243
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: D7FYI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI7_ECTSI) HSP 1 Score: 103 bits (258), Expect = 1.680e-24 Identity = 70/160 (43.75%), Postives = 88/160 (55.00%), Query Frame = 1
Query: 1 QGCTLDFFTTRDLTEYDEARTSMAKYMWRRNNGSHNRKQSLCSPVGAEQKQPSVSADERKTALYH------------------WSERHVSIVQNTIFQTLARLAMDALAAYRSGQENANISDSPRHAIAVRYRPATSPFLFNEQYVVKPPKSSIKFGWHT 426
+GC LDFFT +L E DEARTSMAKYM RRN G R+ + + ++ D R + W+ERH+S+V++TIF TLA LA DAL A RS A+ D+ R+ A LFNEQYVVKPP+SSI+FGWHT
Sbjct: 48 KGCALDFFTNNELPEDDEARTSMAKYMSRRN-GRRRRRFPGGNDIHPSVEKAPPPGDSRGASRDGGGTMSGLSTTSPSCGGGGWTERHLSVVRDTIFGTLAALAWDALEAERSAA--ADEEDAVRNPDASGAGERGGLLLFNEQYVVKPPRSSIEFGWHT 204
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A836CGX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGX5_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.310e-14 Identity = 60/182 (32.97%), Postives = 80/182 (43.96%), Query Frame = 1
Query: 4 GCTLDFFTTRDLTEYDEARTSMAKYMWRRNNGSHNRKQSLCSPVGAEQKQPSVSADERKTALYHWSERHVSIVQNTIFQTLARLAMDALAAYRSGQENANISDSPRHAIAVRYRPATSPFLFNEQYVVKPPKSSIKFGWHTDEREQLAMCIFPSGVQPPV--YVSVWLALDDCDAANGCLEV 543
C LDFF+ DL + AR + +KY R S G + + H S+V + +F+ L L + +L R A A + R LFNEQY+ KPP+S++ F WH D EQLAM + + Q P Y SVW+ALDD A NGCL V
Sbjct: 53 SCALDFFSECDLPDTHSARVNASKYQDLR-----------WSRCGVD-----------------FGREHKSLVADVLFRQLPELLL-SLTQXXXXXXXXXXXXXXREAPAPQQRQLV---LFNEQYICKPPRSAVNFRWHRDADEQLAMVLATAPHQAPALHYYSVWVALDDAAADNGCLVV 202
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: L1ID35_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ID35_GUITC) HSP 1 Score: 76.6 bits (187), Expect = 3.700e-13 Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 364 LFNEQYVVKPPKSSIKFGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
LFNEQYVVKPP+S ++FGWHTDE EQL MC+ Q P YVSVWL L D NG LE+
Sbjct: 190 LFNEQYVVKPPQSRVEFGWHTDEAEQLQMCL--QRPQSP-YVSVWLPLCDTTFHNGTLEI 246
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A024GC10_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GC10_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 6.490e-11 Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 361 FLFNEQYVVKPPKSSIKFGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
+LFN+ Y+VKPP+S KFGWH D+ +QLAM + ++P Y SVW ALD NG +E+
Sbjct: 125 YLFNDHYIVKPPQSDSKFGWHRDDEKQLAMISSWASIRP--YFSVWCALDSITKENGAIEL 183
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: D7FYI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI8_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 3.120e-9 Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1
Query: 448 MCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
MC+F G +PPVYVSVWLALDDCDA NGCLEV
Sbjct: 1 MCVFAPGARPPVYVSVWLALDDCDAVNGCLEV 32
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A835VZ50_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835VZ50_9CHLO) HSP 1 Score: 65.1 bits (157), Expect = 4.020e-9 Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 1
Query: 331 AVRYRPATSPFLFNEQYVVKPPKSSIK--FGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
A Y A P+LFNEQ+++KPP+S+ + FGWH D C Q Y+SVW ALDD +A NG L V
Sbjct: 134 AADYGRAAGPYLFNEQFIIKPPRSTARSAFGWHRDSD----WCRGRPEFQYSPYISVWTALDDMEAGNGALAV 202
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A2K3E5F3_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E5F3_CHLRE) HSP 1 Score: 64.3 bits (155), Expect = 8.260e-9 Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 358 PFLFNEQYVVKPPKSSIK--FGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
P+LFNEQ+++KPP+SS + FGWH D C Q Y+SVW ALDD DA NG L V
Sbjct: 291 PYLFNEQFIIKPPRSSARCAFGWHRDSD----WCRGRPEFQYSPYISVWAALDDMDAENGALAV 350
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A061R772_9CHLO (Phytanoyl-dioxygenase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R772_9CHLO) HSP 1 Score: 60.5 bits (145), Expect = 8.710e-8 Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 352 TSPFLFNEQYVVKPPKSSIK-FGWHTDE---REQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
T P+LFNEQY+VKPP+S + F WH D R++ GV+ P YVSVW ALDD NG L +
Sbjct: 108 TRPWLFNEQYIVKPPRSPLSAFAWHRDSDWVRDE-------DGVEYP-YVSVWCALDDTATGNGTLSI 167
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A8J4CJ13_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CJ13_9CHLO) HSP 1 Score: 60.1 bits (144), Expect = 2.170e-7 Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 1
Query: 358 PFLFNEQYVVKPPKSSIK--FGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
P+LFNEQ++VKPP+SS FGWH D C + YVSVW ALDD A NG L V
Sbjct: 259 PYLFNEQFIVKPPRSSAAAAFGWHRDSD----WCRDRQEYEYSPYVSVWTALDDMTADNGALTV 318 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59698.13488.1 >prot_H-elongata_contig59698.13488.1 ID=prot_H-elongata_contig59698.13488.1|Name=mRNA_H-elongata_contig59698.13488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp QGCTLDFFTTRDLTEYDEARTSMAKYMWRRNNGSHNRKQSLCSPVGAEQKback to top mRNA from alignment at H-elongata_contig59698:2567..3562+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59698.13488.1 ID=mRNA_H-elongata_contig59698.13488.1|Name=mRNA_H-elongata_contig59698.13488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=996bp|location=Sequence derived from alignment at H-elongata_contig59698:2567..3562+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59698:2567..3562+ >mRNA_H-elongata_contig59698.13488.1 ID=mRNA_H-elongata_contig59698.13488.1|Name=mRNA_H-elongata_contig59698.13488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig59698:2567..3562+ (Himanthalia elongata Himel1 dioecious)back to top |