prot_H-elongata_contig59695.13487.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig59695.13487.1
Unique Nameprot_H-elongata_contig59695.13487.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length168
Homology
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BLAST of mRNA_H-elongata_contig59695.13487.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.480e-23
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 0 
Query:    9 LPSAPGTKNKEARPRIHVEGGRAFVYDASSAALLLSEHRIWANPVGVRRAGRKSSEHNFPCVLTQEQTTLILRRNFADVY 88
            L +    +    RP++HV  GR  VYD +SAA LLSEHRIWA PVGVRRA  KS EH+FPCVL+ EQ TL+LRR  ADV+
Sbjct:    6 LTAGAAARGSGRRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVF 85
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BLAST of mRNA_H-elongata_contig59695.13487.1 vs. uniprot
Match: D8LBR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR0_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.640e-10
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 0 
Query:    9 LPSAPGTKNKEARPRIHVEGGRAFVYDASSAALLLSEHRIWANPVGVRR 57
            L +    +    RPR+HV  GR  VYD +SAA LLSEHRIWA PVGVRR
Sbjct:    2 LTAGAAARGSGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59695.13487.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE4.480e-2360.00tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D8LBR0_ECTSI1.640e-1059.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59695contigH-elongata_contig59695:1464..2530 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59695.13487.1mRNA_H-elongata_contig59695.13487.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig59695 1383..2530 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig59695.13487.1 ID=prot_H-elongata_contig59695.13487.1|Name=mRNA_H-elongata_contig59695.13487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
AQDVRPRPLPSAPGTKNKEARPRIHVEGGRAFVYDASSAALLLSEHRIWA
NPVGVRRAGRKSSEHNFPCVLTQEQTTLILRRNFADVYAGFLPGVDERIP
AADATPNVTGVTFDDGGGAALAAPCDAAGSLSSVESVRVKGLNAVCRRRA
IALSFPCHTVCFRELTT*
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