mRNA_H-elongata_contig59650.13484.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59650.13484.1
Unique NamemRNA_H-elongata_contig59650.13484.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig59650.13484.1 vs. uniprot
Match: A0A6H5JUT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.960e-37
Identity = 132/254 (51.97%), Postives = 141/254 (55.51%), Query Frame = 3 
Query:  141 KGKARGGGARGGVLDPLDPEGEGYTERPYNLGKQQGPQQRPDP-LGVFGPSQGPETMPPQSSSGNPAAKTTVGESGGSGTLGPIQGPARPPGLKASATVSEAVLRMKPTHLRVHRPSGPRXXXXXXXXXXXXXXXXXXXXVVRRRASPSEKVAFSVPRPAGTAFLTPRSTRSGPGAGASSSSRDLGALSXXXXXXXXXXXXXAVS--AAHGXXXXXASKAVSRRTAKEPVETKKAGVNQEYDSFMEEMKGLGAF 893
            +GK RGG  R G +DPLDPE  GYTERPYNL KQ GPQQR       FGPSQGP                    + GSGTLGP+QGP+RP    A   VSE +LRMKP HLRV RP G       XXXXXXX           R           VPRPAG AFLTPR  R  PGAGA  ++  + A SXXXXXXXXXXXXX     AA       A  A S          KKAGVNQEYDSFMEEMKGLGAF
Sbjct:  152 EGKGRGGAGRSGPVDPLDPEAAGYTERPYNLNKQGGPQQRGGAQAAAFGPSQGPAXXXXXXXXXXXXXXXXXSGAAGSGTLGPVQGPSRPAPKPA---VSEDLLRMKPVHLRVQRPGGVSRAAGGXXXXXXXPG---------RXXXXXXXXXXXVPRPAGAAFLTPRGARPRPGAGAGRTAAMMSASSXXXXXXXXXXXXXXXXXXAAGAAATAAAPAARSXXXXXXXXXEKKAGVNQEYDSFMEEMKGLGAF 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59650.13484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUT0_9PHAE3.960e-3751.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59650contigH-elongata_contig59650:162..3653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1173
Cds size837
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59650.13484.1prot_H-elongata_contig59650.13484.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59650 221..3376 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.329011-UTR-H-elongata_contig59650:161..2201622930966.329011-UTR-H-elongata_contig59650:161..220Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59650 162..220 +
1691679643.4938025-UTR-H-elongata_contig59650:161..2201691679643.4938025-UTR-H-elongata_contig59650:161..220Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59650 162..220 +
1622930966.4219267-UTR-H-elongata_contig59650:3376..36531622930966.4219267-UTR-H-elongata_contig59650:3376..3653Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59650 3377..3653 +
1691679643.543506-UTR-H-elongata_contig59650:3376..36531691679643.543506-UTR-H-elongata_contig59650:3376..3653Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59650 3377..3653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.3599188-CDS-H-elongata_contig59650:220..3621622930966.3599188-CDS-H-elongata_contig59650:220..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59650 221..362 +
1691679643.5073109-CDS-H-elongata_contig59650:220..3621691679643.5073109-CDS-H-elongata_contig59650:220..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59650 221..362 +
1622930966.3767076-CDS-H-elongata_contig59650:1260..13521622930966.3767076-CDS-H-elongata_contig59650:1260..1352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59650 1261..1352 +
1691679643.517406-CDS-H-elongata_contig59650:1260..13521691679643.517406-CDS-H-elongata_contig59650:1260..1352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59650 1261..1352 +
1622930966.3940167-CDS-H-elongata_contig59650:2112..25041622930966.3940167-CDS-H-elongata_contig59650:2112..2504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59650 2113..2504 +
1691679643.5265565-CDS-H-elongata_contig59650:2112..25041691679643.5265565-CDS-H-elongata_contig59650:2112..2504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59650 2113..2504 +
1622930966.4068062-CDS-H-elongata_contig59650:3165..33761622930966.4068062-CDS-H-elongata_contig59650:3165..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59650 3166..3376 +
1691679643.535064-CDS-H-elongata_contig59650:3165..33761691679643.535064-CDS-H-elongata_contig59650:3165..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59650 3166..3376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59650.13484.1

>prot_H-elongata_contig59650.13484.1 ID=prot_H-elongata_contig59650.13484.1|Name=mRNA_H-elongata_contig59650.13484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=279bp
MAGTAATPIGVYGPGQALSSGGEGLRGKGKARGGGARGGVLDPLDPEGEG
YTERPYNLGKQQGPQQRPDPLGVFGPSQGPETMPPQSSSGNPAAKTTVGE
SGGSGTLGPIQGPARPPGLKASATVSEAVLRMKPTHLRVHRPSGPRGTST
TSAAAAAARGGLGGVGVVRRRASPSEKVAFSVPRPAGTAFLTPRSTRSGP
GAGASSSSRDLGALSSVPRPASATFLKPAVSAAHGGGGGGASKAVSRRTA
KEPVETKKAGVNQEYDSFMEEMKGLGAF*
back to top

mRNA from alignment at H-elongata_contig59650:162..3653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59650.13484.1 ID=mRNA_H-elongata_contig59650.13484.1|Name=mRNA_H-elongata_contig59650.13484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3492bp|location=Sequence derived from alignment at H-elongata_contig59650:162..3653+ (Himanthalia elongata Himel1 dioecious)
GGGGAGGCGTAAGTGGAACGCAATCCCTCCCACCTCCACCGCCTCCTCGG
AGGCCTCTCATGGCGGGGACGGCGGCAACCCCGATTGGCGTATACGGGCC
TGGTCAGGCGTTATCAAGCGGGGGAGAGGGATTGCGTGGCAAAGGGAAGG
CGCGCGGAGGCGGTGCCAGGGGTGGGGTCCTTGACCCGCTCGACCCCGAG
GGTGAGCCTTCAAAAGGGCGTCAGAGTTTGTCATGTTTCCACTTTGTATG
TATTTATATATACTATTATATATATGCATTATTTTTGTGTTATGCCGAGG
GTGAGCCCCTTGAAGGGTCTCTCAGAGGTTGGCATGTTTCTAGCGTGTCT
GTCAATATACATTATAATATATATATAGTAATATTAAATTTACCTTGTCT
CTCTTTGTTTCGGCTGGTATGCCTTTGATCCGGAAATTGATTAGTGTCAC
TACGTAGTTACAATTTAGTTTGTGACTACGGGGACATATAAGGGGTCATC
CCCGGGGTTTCCACCATCAAATTAAGGTTCTCAGAGCCCAAGGATGTGTG
TGTGTGTGGGTTAGGGTTAGGGTTTGTGGGCGGATTGGGTCAGCCAGTAT
ATATAGGTTTTTAAGAAACAGCTATTTTACTCTGCATGAAATTAACGTTT
TTTGACGTTTTTTGACGTTTTATCCTGTAGTCACAAACTAAATTGCGACT
ACGTAGTCACAGTTATCACTCCCCCTTTGATCCTATGCTGTCGTTATACC
GTCGTTTGTCTGCTGTCGGTCGGTATATACCGCTATTCCTATCTCTTGGC
TGTGTCTGGATATCCCGTGTTCTCGTTACAGTATTATGTGGAGTGTTTTA
TCTATCTAAATATTCTAGTGGTGCCATTATCTGCATTTTTATTATTTGTA
TTGTACCACCTCTGCTTTCTCAGCGTTGACAGTGTCTCCTGTCCAAATCG
TTTACGCCCCTGGGTAGGGTAGGGGAAAGACTCAATATCTCTATGAAAAC
CTCTCGCGGTCCGCGCCAGCTCCGCCGATATTTGCCGCAGATTTTTATTC
CGTTACTCGTCGTGTCCCGCAAAAAACATGCCTCCGTCTCTCTACACAGG
CGAGGGATACACGGAACGTCCTTACAATCTGGGAAAGCAGCAGGGACCTC
AACAACGACCCGACCCTCTGGGGGTGTTCGGCCCTTCTCAGGTTCGATCC
TATCCTGTACAAGAAACTGGGCCCATCTCCAAGTGCCGGGCGCAGCAATA
GCTTTTGACTTTTGACGACTTCCAGTTCAATTTTATCGCCCCCCCCCGTA
CCCTAAAGGAAATTGTTTGCATGTCGATGCGATGCGGACAACCTCCCTAT
AGAGAAGATCGTGGTTGCAAAGAGAAAAAACGAACAAGGAGAATGTTGCG
ATTCGATCGAATTGTGCTAAATGGCTTCTTAACGTTAAGAACATGTGCGA
CAGCAGCTCTTATAAGAACACCCCCGTTGTTTCCCATTTGATTGCATTCA
CGATGAAGTTGTTTGGTTTGGGCGTTGCGTACTCCATCCTGTCAACATTT
GGCCGAATAAATGCTGTTAAATGTTATATAAATATGTTACATGCTAAGCT
ACTTCGGGAAGCCCGTTTTATAGATTTTCCATGGCCTGCTCTTGTCCTGT
GCACCTCAAAATCCTCTAGAGCCTAAAACAAATAAAAAAAAACTATTTTG
TGGTAAATGTACACATTCAAGCCTGACGATAGTTGTTTCCCTGGACTGTA
CCTCTCATCATGTTGCTAAAAGTATATAGTATATAGTGTGGATGTTCGGA
GGGTTGGAATGAGCTCATATGTTTTAAAATATAAAATGCCAGAGACGCTT
AGATATATCTGTATAGATATTTAAAGACGATTATGAAATATAACATTTTA
GAGCCTCTTTGCCAACGCACTGCTTTGGCGTCTCCTCTGGTGAAAACTCA
GGGCCCCGAGACGATGCCGCCTCAGTCCTCGAGCGGAAACCCCGCCGCGA
AGACCACCGTGGGCGAAAGCGGCGGTTCTGGAACGCTGGGACCGATCCAA
GGACCGGCTCGGCCTCCGGGTTTGAAAGCCTCCGCCACCGTCTCGGAAGC
GGTGCTCCGAATGAAGCCAACGCATTTGCGCGTCCATCGCCCGAGCGGGC
CTCGTGGGACCTCTACAACATCGGCGGCAGCGGCAGCAGCGAGGGGAGGC
CTCGGGGGCGTGGGGGTCGTCAGGAGGAGGGCTTCTCCTTCTGAGAAGGT
GGCATTTTCGGTGCCGCGACCGGCGGGGACGGCGTTTCTTACGCCCCGAA
GCACTCGGTCTGGGCCTGGCGCCGGCGCTAGCAGCAGTAGCAGGTGGGGA
AAAGGGAACACGTCTTCTTCCCCTCACACCTCACATTAAAGTTAATGAAC
TAACTGGTCTTCACTTAGGTTCGCAACTCTGGGTTTAATCTCCTCAGCAC
CCTAGCCGTGTATCACGGAATCACACATGCAGAATATAGTCCCGCATATA
TTTAGAAAAATTAATCTTATCTCCTCCTCCTCCTTCTCGGGGGGCAAACA
TTTTTCATCGCCGGGGGTTAGATTTTTTTGTCCCCCGGGGACCATAATTT
TATATCCCCTGGAGATAGATTACTGATATCATCTGCCGGGGACGAGATTT
CCTCTTTACCCTGGATATATATATTTTTTATTCCCCCTGGGATATTTTCT
TAGCCATTCCCGCTTTTTTCCGCCGCGTTTTTCTGAGGAACCTCGTGCGG
AAAAAATACAATTTTTTATATATAAGCCGCGTTGGAAGAGGCTTCTGCAT
TTTTTTTCACTCAACTATACACATCCACGCTGTTGTAACAAACGCACGCA
CGAGCCGCGCCGCGCGCACAAAAACTCTCGCGAAAACCCACATGTATATA
TATATATATATACATTCGAATTCTCGCGAAAACACACGCGCGGGCGGGTG
CACGCACGCACGTGGACAATCACATACATCCCCCGCCGCCGCCGTTCCTC
CTAGGGATCTCGGAGCTCTGTCGTCAGTGCCACGACCGGCGAGCGCGACG
TTCTTGAAGCCGGCTGTCTCTGCTGCTCACGGGGGTGGCGGAGGTGGCGC
CTCGAAGGCCGTGTCGCGTCGCACCGCCAAGGAACCCGTGGAGACCAAGA
AGGCCGGAGTGAATCAGGAGTATGACAGCTTCATGGAAGAAATGAAGGGC
CTGGGCGCCTTCTGAGCGGGGAAAAGGGGACGTGAATGATGTGGTTGTTT
GTGTCGTCTGTCGACAAGTCTAACGAAAGGAAGGAAGAACTACATAGAGA
GAGATCCTAAAGTTGTGCAATAGAGAGATCCTAGAGGTGTGCGCACGCAT
GCTCGCTCGCTCGCTTTCTGGGGAAAAGGTGGTCGTTGGTCGAACACGTC
GTTCGTTCTATAAAACGCGGAAATATTAATACCCCCTCACCCCGTGCCCC
CGCTTTTTTTTTCCCTAAGCACTCTCTTGAAAGGATCTCGCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59650:162..3653+

>mRNA_H-elongata_contig59650.13484.1 ID=mRNA_H-elongata_contig59650.13484.1|Name=mRNA_H-elongata_contig59650.13484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1674bp|location=Sequence derived from alignment at H-elongata_contig59650:162..3653+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGGGACGGCGGCAACCCCGATTGGCGTATACGGGCCTGGTCAGGC
GTTATCAAGCGGGGGAGAGGGATTGCGTGGCAAAGGGAAGGCGCGCGGAG
GCGGTGCCAGGGGTGGGGTCCTTGACCCGCTCGACCCCGAGGATGGCGGG
GACGGCGGCAACCCCGATTGGCGTATACGGGCCTGGTCAGGCGTTATCAA
GCGGGGGAGAGGGATTGCGTGGCAAAGGGAAGGCGCGCGGAGGCGGTGCC
AGGGGTGGGGTCCTTGACCCGCTCGACCCCGAGGGCGAGGGATACACGGA
ACGTCCTTACAATCTGGGAAAGCAGCAGGGACCTCAACAACGACCCGACC
CTCTGGGGGTGTTCGGCCCTTCTCAGGCGAGGGATACACGGAACGTCCTT
ACAATCTGGGAAAGCAGCAGGGACCTCAACAACGACCCGACCCTCTGGGG
GTGTTCGGCCCTTCTCAGGGCCCCGAGACGATGCCGCCTCAGTCCTCGAG
CGGAAACCCCGCCGCGAAGACCACCGTGGGCGAAAGCGGCGGTTCTGGAA
CGCTGGGACCGATCCAAGGACCGGCTCGGCCTCCGGGTTTGAAAGCCTCC
GCCACCGTCTCGGAAGCGGTGCTCCGAATGAAGCCAACGCATTTGCGCGT
CCATCGCCCGAGCGGGCCTCGTGGGACCTCTACAACATCGGCGGCAGCGG
CAGCAGCGAGGGGAGGCCTCGGGGGCGTGGGGGTCGTCAGGAGGAGGGCT
TCTCCTTCTGAGAAGGTGGCATTTTCGGTGCCGCGACCGGCGGGGACGGC
GTTTCTTACGCCCCGAAGCACTCGGTCTGGGCCTGGCGCCGGCGCTAGCA
GCAGTAGCAGGGCCCCGAGACGATGCCGCCTCAGTCCTCGAGCGGAAACC
CCGCCGCGAAGACCACCGTGGGCGAAAGCGGCGGTTCTGGAACGCTGGGA
CCGATCCAAGGACCGGCTCGGCCTCCGGGTTTGAAAGCCTCCGCCACCGT
CTCGGAAGCGGTGCTCCGAATGAAGCCAACGCATTTGCGCGTCCATCGCC
CGAGCGGGCCTCGTGGGACCTCTACAACATCGGCGGCAGCGGCAGCAGCG
AGGGGAGGCCTCGGGGGCGTGGGGGTCGTCAGGAGGAGGGCTTCTCCTTC
TGAGAAGGTGGCATTTTCGGTGCCGCGACCGGCGGGGACGGCGTTTCTTA
CGCCCCGAAGCACTCGGTCTGGGCCTGGCGCCGGCGCTAGCAGCAGTAGC
AGGGATCTCGGAGCTCTGTCGTCAGTGCCACGACCGGCGAGCGCGACGTT
CTTGAAGCCGGCTGTCTCTGCTGCTCACGGGGGTGGCGGAGGTGGCGCCT
CGAAGGCCGTGTCGCGTCGCACCGCCAAGGAACCCGTGGAGACCAAGAAG
GCCGGAGTGAATCAGGAGTATGACAGCTTCATGGAAGAAATGAAGGGCCT
GGGCGCCTTCTGAGGATCTCGGAGCTCTGTCGTCAGTGCCACGACCGGCG
AGCGCGACGTTCTTGAAGCCGGCTGTCTCTGCTGCTCACGGGGGTGGCGG
AGGTGGCGCCTCGAAGGCCGTGTCGCGTCGCACCGCCAAGGAACCCGTGG
AGACCAAGAAGGCCGGAGTGAATCAGGAGTATGACAGCTTCATGGAAGAA
ATGAAGGGCCTGGGCGCCTTCTGA
back to top