mRNA_H-elongata_contig5965.13483.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE) HSP 1 Score: 196 bits (499), Expect = 6.820e-59 Identity = 98/184 (53.26%), Postives = 129/184 (70.11%), Query Frame = 1
Query: 55 HFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTVEVTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPK 606
+F G +G + FTVQ AQR S R AGTM TK VEVT+E++K+ ++D V P IK+R+P + R +++Q DN H IN D ++ AA ADGWDIRL+NQP+NSPDTNILDLGFFN +QSLQDR TPR VD+ + VK A+ +P ++VW+SLQA L QI+L G+N +KLPH+ K
Sbjct: 87 NFTGKLGIFQFTVQRAAQRNSRNRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWPGGRG------RTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAIL-QIILAKGNNTFKLPHLKK 263
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: A0A6A4Z2B2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z2B2_9STRA) HSP 1 Score: 197 bits (501), Expect = 2.840e-57 Identity = 99/205 (48.29%), Postives = 138/205 (67.32%), Query Frame = 1
Query: 1 VMFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTVEVTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPKGGL 615
VMFL+AV RP +S+ F+G +GT+ FT + A R S RPAGT+VT V VTR +YK M++DHVIP IK ++P S E + + +QQDNARPH+ D +I AA ++DGW + + QP NSPD NILDLGFF IQSLQ + R +DD+V A ++AW + LN +L+LQ CL++++ +GG+N+YK+PH+ K L
Sbjct: 227 VMFLSAVARPRWDSAKGELFDGKLGTWHFTTKVPAARGSRNRPAGTLVTSPVSVTRSVYKAMLLDHVIPAIKRKWP------STESKKITIQQDNARPHIPPRDHDIVAACTSDGWAMEVKYQPPNSPDMNILDLGFFRAIQSLQVKNHSRCIDDIVSATEQAWIDVESATLNANFLTLQCCLQEVVRMGGNNNYKIPHMKKAAL 425
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: W4HAZ6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAZ6_9STRA) HSP 1 Score: 191 bits (484), Expect = 3.530e-57 Identity = 99/205 (48.29%), Postives = 134/205 (65.37%), Query Frame = 1
Query: 1 VMFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTVEVTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPKGGL 615
VMFL+AV RP ++ ++ +G IGT+ FT Q R S RPAGT+ TK V VTR++Y+ M+IDHVIP IK+++P E R + +QQDNARPH+ D I A ++DGW + L QP NSPD N+LDLGFF IQSLQ++ R VDD+V A EAW P LN +L+LQ C+ +++ V G+N+YK+PH+ K L
Sbjct: 1 VMFLSAVARPRWDNEKSALVDGKIGTWHFTEQVPVIRASRNRPAGTLETKPVSVTRDMYRAMLIDHVIPAIKAKWP------VGESRRIIIQQDNARPHVPPLDSRIVDACTSDGWMMELKYQPPNSPDLNVLDLGFFRAIQSLQEKNYSRNVDDIVAASDEAWKQVEPMTLNANFLTLQCCMHEVIRVAGNNNYKIPHMKKASL 199
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: A0A6A4YXI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI9_9STRA) HSP 1 Score: 196 bits (498), Expect = 6.530e-57 Identity = 101/205 (49.27%), Postives = 138/205 (67.32%), Query Frame = 1
Query: 1 VMFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTVEVTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPKGGL 615
VMFL+AV RP N T F+G IGT+ FT + A R S RPAGT+ T+ V VTR +YK M+ID VIP IKS++P +SA R V +QQDNARPH+ +D I A + GW++++V QP NSPD NILDLGFF IQSLQ++ R +DD++ A +AW+++ LN +L+LQ C+++I+ GDN+YK+PH+ K L
Sbjct: 217 VMFLSAVARPRLNDDTGEWFDGKIGTWHFTEKVAAARTSRNRPAGTLETQPVSVTRPVYKAMLIDKVIPTIKSKWP---SSAG---RNVIIQQDNARPHVPPSDSAIVDACKSGGWNMKVVYQPPNSPDLNILDLGFFRAIQSLQEKNHSRNIDDIIAATDQAWSDELSSTLNDNFLTLQGCMQEIISAQGDNNYKIPHMGKAKL 415
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: A0A8I6WKB7_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WKB7_HORVV) HSP 1 Score: 189 bits (481), Expect = 8.400e-57 Identity = 97/205 (47.32%), Postives = 137/205 (66.83%), Query Frame = 1
Query: 1 VMFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTVEVTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPKGGL 615
VMFL AV RP +S N F+G IG +PF + AQR+S RP GTM TK+++V R++ ++ MI++++P I+S +P A + ++++QDNA+PH++ ND E A+ + G DIRL+ QPANSPD N LDLGFFN +QSL D +PR + DL+K V E + N LNRV+LSLQAC+ +I+ G N YK+PH+ K L
Sbjct: 43 VMFLTAVARPKWDSEGNVTFSGKIGIWPFVKEIPAQRKSDNRPRGTMETKSIKVNRQVMREFMIENLLPAIQSSWPDNDAG-----QTIFIKQDNAKPHILPNDPEFLVAVESTGLDIRLIQQPANSPDLNGLDLGFFNSLQSLTDCLSPRTLQDLIKGVLEEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHVNKERL 242
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: A0A834FW95_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FW95_RHOSS) HSP 1 Score: 192 bits (487), Expect = 9.350e-56 Identity = 102/206 (49.51%), Postives = 140/206 (67.96%), Query Frame = 1
Query: 1 VMFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTVE-VTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPKGGL 615
VMFLAAV RP ++ F+G IG +PFTV+E A+R S R AGTM TK V VT+++ + +I+ VIP I+S++ + + +++QQDNARPH+ ND E A + +G+DIRL NQPANSPD N+LDLGFFN IQSLQ + PR +D LV AV+++++ L+ V+LSLQAC+ ++M V G N+YKLPHI K L
Sbjct: 215 VMFLAAVARPRFGANGCEEFSGKIGIFPFTVKEPAKRTSKNRLAGTMETKAVAAVTKDVIRSYLIEKVIPAIQSKWHQSSVGET-----IYIQQDNARPHIKPNDVEFHEAATRNGFDIRLTNQPANSPDLNVLDLGFFNAIQSLQHQEAPRTIDQLVNAVEKSFDKLPSRELDSVFLSLQACMVEVMKVNGGNNYKLPHIKKPQL 415
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: UPI000E6FC8C0 (uncharacterized protein LOC113311561 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC8C0) HSP 1 Score: 187 bits (475), Expect = 1.550e-55 Identity = 99/206 (48.06%), Postives = 138/206 (66.99%), Query Frame = 1
Query: 1 VMFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTV-EVTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPKGGL 615
VMFLA V RP ++S+ N F+G IG +PFT QE AQR S R AGTM TK + VT+++ + +I+ V P ++S++PR ++ P +++QQDNARPH+ NDQE S DG+DIRL QP NSPD N+LDLG+F IQSLQ R P +D+LV+ V+E++ N + + LN V+L+ Q C+ + M G N+YK+PHI K L
Sbjct: 43 VMFLAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMETKEILSVTKDVIRSCLINKVFPAMRSKWPR-SSNMDP----IFIQQDNARPHINPNDQEFLEDASKDGFDIRLSFQPPNSPDFNVLDLGYFRAIQSLQYRCAPSTIDELVQPVQESFENLSSENLNYVFLTFQGCMIESMKQLGGNNYKVPHIAKDRL 243
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: UPI0009019CDE (uncharacterized protein LOC109159770 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI0009019CDE) HSP 1 Score: 188 bits (477), Expect = 1.590e-55 Identity = 98/206 (47.57%), Postives = 138/206 (66.99%), Query Frame = 1
Query: 1 VMFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTVE-VTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPKGGL 615
VMFL AV RP + N F+G IG +PF +E A+RRS R AGT+ TK +E V +E+ +K +ID+V+P I++++P P +S + +++QQDNARPH+ ND E A DG+DI L QP NSPD N+LDLGFF +QSLQ + PR VD+LV A +A+N + ++L+ V+L+LQ C+ ++M G N+YKLPHI K L
Sbjct: 98 VMFLCAVARPRFDLERNEMFDGKIGMFPFVYKEPAKRRSKNREAGTLETKPIESVNKEVTRKWLIDYVLPAIRAKWP-PSSS-----KTIYIQQDNARPHISMNDVEFLEAAKKDGFDIHLTCQPPNSPDMNVLDLGFFRALQSLQHQEAPRNVDELVAATHKAFNEISVESLSNVFLTLQLCMVEVMKKFGGNNYKLPHINKQKL 297
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: UPI000E6FC7BC (uncharacterized protein LOC113359119 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC7BC) HSP 1 Score: 186 bits (471), Expect = 1.850e-55 Identity = 99/206 (48.06%), Postives = 138/206 (66.99%), Query Frame = 1
Query: 1 VMFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTV-EVTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPKGGL 615
VMFLA V RP ++S+ N F+G IG +PFT QE AQR S R AGTM TK + VT+++ + +I+ V+P I+S++PR ++ P +++QQDNARPH+ NDQE S DG+DIRL QP NSPD N+LDLG+F IQSLQ R P +D+LV+AV+E++ N + LN V+L+ Q C+ + M G N+YK+ H+ K L
Sbjct: 30 VMFLAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMETKAILSVTKDVIRSCLINKVLPAIRSKWPR-SSNMEP----IFIQQDNARPHINPNDQEFLEDASKDGFDIRLSFQPPNSPDFNVLDLGYFRAIQSLQYRYAPSTIDELVQAVQESFENLSSKNLNYVFLTFQGCMIESMKQLGGNNYKVSHMAKDRL 230
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Match: A0A834LPB9_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LPB9_RHOSS) HSP 1 Score: 190 bits (482), Expect = 5.050e-55 Identity = 101/206 (49.03%), Postives = 136/206 (66.02%), Query Frame = 1
Query: 1 VMFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTV-EVTREIYKKMMIDHVIPDIKSRFPRPQASASPEERIVWVQQDNARPHLINNDQEIWAAMSADGWDIRLVNQPANSPDTNILDLGFFNPIQSLQDRTTPRRVDDLVKAVKEAWNNDTPDALNRVWLSLQACLEQIMLVGGDNDYKLPHIPKGGL 615
VMFLAAV RP +++ N F+G IG +PFT +E A+R S R AGT+ TK V VT+EI +K +I+ V+P I++++PR + + +QQDNARPH+ D E S DG+DIRL QP NSPD N+LDLGFF IQSLQ + P+ +D+LV V A+ +P L+ V+L+LQAC+ +IM V G YK+PHI KGGL
Sbjct: 214 VMFLAAVARPRFDTTRNQEFSGKIGIFPFTYKEPAKRTSKNRVAGTLETKVVVSVTKEIIRKCLIEKVLPAIRAKWPRGNGIET-----ILIQQDNARPHIREFDAEFLEEASKDGFDIRLSFQPPNSPDLNVLDLGFFRAIQSLQYQKAPKNIDELVSVVVSAFEELSPQTLDNVFLTLQACMIEIMKVNGGIGYKVPHIGKGGL 414 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5965.13483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5965.13483.1 >prot_H-elongata_contig5965.13483.1 ID=prot_H-elongata_contig5965.13483.1|Name=mRNA_H-elongata_contig5965.13483.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp MFLAAVGRPTHNSSTNSHFNGNIGTYPFTVQERAQRRSVKRPAGTMVTKTback to top mRNA from alignment at H-elongata_contig5965:8942..9559+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5965.13483.1 ID=mRNA_H-elongata_contig5965.13483.1|Name=mRNA_H-elongata_contig5965.13483.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at H-elongata_contig5965:8942..9559+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5965:8942..9559+ >mRNA_H-elongata_contig5965.13483.1 ID=mRNA_H-elongata_contig5965.13483.1|Name=mRNA_H-elongata_contig5965.13483.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig5965:8942..9559+ (Himanthalia elongata Himel1 dioecious)back to top |