mRNA_H-elongata_contig59648.13482.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59648.13482.1
Unique NamemRNA_H-elongata_contig59648.13482.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59648.13482.1 vs. uniprot
Match: D7G8E5_ECTSI (Putative retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 7.720e-25
Identity = 66/130 (50.77%), Postives = 80/130 (61.54%), Query Frame = 2 
Query:    2 VMKEGIVVTKMLHGKYRQLWNERNTLLAP--LPPQPCASGKEVNSN----GKVPE--GEGDRDG---------------------GYHASLPKSTDPEALPRLGWYLYLLTKEVLGFRSSNVAFMRCLSL 304
            VMKEGIVVTKML+GKYRQ+WNER++L  P    P   A G + +SN    G +P    E ++ G                     G+   LP S DP+ALPRLGWYLYLLTK+VLGFRSSN AF+RCL+L
Sbjct:   98 VMKEGIVVTKMLYGKYRQIWNERDSLFPPAIFGPSSAAFGNDGDSNNMTNGVLPSQAAENNKGGXXXXXXTSDDHDINSAAVAAAGFPLPLPPS-DPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNL 226
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BLAST of mRNA_H-elongata_contig59648.13482.1 vs. uniprot
Match: A0A6H5JHA1_9PHAE (RB_A domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.120e-12
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 2 
Query:  101 PCASGKEVNSNGKVPEGEGDRD--------GGYHASLPKSTDPEALPRLGWYLYLLTKEVLGFRSSNVAFMRCLSL 304
            P  + +  N +G   E   D D         G+   LP S DP+ALPRLGWYLYLLTK+VLGFRSSN AF+RCL+L
Sbjct:  150 PSQAAENKNKSGGADETSDDHDISSAATAAAGFPLPLPPS-DPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNL 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59648.13482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8E5_ECTSI7.720e-2550.77Putative retinoblastoma n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHA1_9PHAE1.120e-1252.63RB_A domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59648contigH-elongata_contig59648:2360..3057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.9e-21
Seed eggNOG ortholog2880.D7G8E5
Preferred nameRB1
KEGG koko:K04681,ko:K06618
KEGG Pathwayko01522,ko04110,ko04218,ko04350,ko04934,ko05161,ko05165,ko05166,ko05167,ko05169,ko05200,ko05203,ko05212,ko05214,ko05215,ko05218,ko05219,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map01522,map04110,map04218,map04350,map04934,map05161,map05165,map05166,map05167,map05169,map05200,map05203,map05212,map05214,map05215,map05218,map05219,map05220,map05222,map05223,map05224,map05225,map05226
KEGG ModuleM00692
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000082,GO:0000083,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0000902,GO:0000904,GO:0000976,GO:0000987,GO:0001047,GO:0001067,GO:0001085,GO:0001102,GO:0001558,GO:0001708,GO:0001894,GO:0001932,GO:0001933,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002761,GO:0002763,GO:0003170,GO:0003176,GO:0003179,GO:0003180,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006275,GO:0006325,GO:0006338,GO:0006349,GO:0006355,GO:0006357,GO:0006469,GO:0006725,GO:0006807,GO:0006915,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007093,GO:0007127,GO:0007129,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007507,GO:0007517,GO:0007519,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008285,GO:0008356,GO:0008589,GO:0008608,GO:0009410,GO:0009553,GO:0009555,GO:0009566,GO:0009567,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010016,GO:0010026,GO:0010033,GO:0010052,GO:0010090,GO:0010103,GO:0010374,GO:0010377,GO:0010389,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010965,GO:0012501,GO:0014070,GO:0014706,GO:0015630,GO:0016043,GO:0016514,GO:0016604,GO:0016605,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019904,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0022619,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030071,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030218,GO:0030518,GO:0030521,GO:0030522,GO:0031134,GO:0031156,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031331,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031625,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032102,GO:0032103,GO:0032268,GO:0032269,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032875,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0033613,GO:0033673,GO:0033993,GO:0034086,GO:0034088,GO:0034101,GO:0034349,GO:0034502,GO:0034613,GO:0034641,GO:0035189,GO:0035257,GO:0035258,GO:0035295,GO:0035556,GO:0035914,GO:0040008,GO:0040012,GO:0040017,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042551,GO:0042592,GO:0042692,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043353,GO:0043388,GO:0043393,GO:0043401,GO:0043433,GO:0043549,GO:0043550,GO:0043565,GO:0043900,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044798,GO:0044843,GO:0045132,GO:0045143,GO:0045165,GO:0045445,GO:0045595,GO:0045596,GO:0045597,GO:0045637,GO:0045639,GO:0045649,GO:0045651,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045859,GO:0045862,GO:0045879,GO:0045892,GO:0045893,GO:0045930,GO:0045931,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048229,GO:0048232,GO:0048285,GO:0048366,GO:0048367,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048565,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0050678,GO:0050680,GO:0050681,GO:0050727,GO:0050728,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051052,GO:0051090,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051321,GO:0051338,GO:0051348,GO:0051402,GO:0051427,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055046,GO:0055123,GO:0060249,GO:0060255,GO:0060341,GO:0060537,GO:0060538,GO:0060548,GO:0061061,GO:0061676,GO:0061982,GO:0062033,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070192,GO:0070603,GO:0070727,GO:0070887,GO:0070997,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071459,GO:0071466,GO:0071495,GO:0071514,GO:0071695,GO:0071704,GO:0071840,GO:0071922,GO:0071930,GO:0072359,GO:0080090,GO:0080134,GO:0090068,GO:0090230,GO:0090329,GO:0090558,GO:0090575,GO:0090626,GO:0090627,GO:0090698,GO:0097159,GO:0097284,GO:0097718,GO:0098813,GO:0099402,GO:0120036,GO:0140013,GO:0140014,GO:0140110,GO:1900120,GO:1900122,GO:1901360,GO:1901363,GO:1901800,GO:1901970,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902099,GO:1902101,GO:1902105,GO:1902107,GO:1902494,GO:1902679,GO:1902680,GO:1902749,GO:1902806,GO:1902807,GO:1902903,GO:1902905,GO:1903046,GO:1903047,GO:1903052,GO:1903053,GO:1903055,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1903706,GO:1903708,GO:1903827,GO:1903866,GO:1903943,GO:1903944,GO:1904019,GO:1904026,GO:1904028,GO:1904035,GO:1904036,GO:1904760,GO:1904761,GO:1904949,GO:1905314,GO:1905634,GO:1905818,GO:1905820,GO:1990837,GO:2000026,GO:2000036,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000653,GO:2000677,GO:2000679,GO:2001141,GO:2001252
EggNOG free text desc.regulation of cell cycle
EggNOG OGsKOG1010@1,KOG1010@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59648.13482.1prot_H-elongata_contig59648.13482.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59648 2360..3053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.164201-CDS-H-elongata_contig59648:2359..25971622930966.164201-CDS-H-elongata_contig59648:2359..2597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59648 2360..2597 -
1691679643.4308574-CDS-H-elongata_contig59648:2359..25971691679643.4308574-CDS-H-elongata_contig59648:2359..2597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59648 2360..2597 -
1622930966.187849-CDS-H-elongata_contig59648:2991..30531622930966.187849-CDS-H-elongata_contig59648:2991..3053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59648 2992..3053 -
1691679643.4435494-CDS-H-elongata_contig59648:2991..30531691679643.4435494-CDS-H-elongata_contig59648:2991..3053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59648 2992..3053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.2047818-UTR-H-elongata_contig59648:3053..30571622930966.2047818-UTR-H-elongata_contig59648:3053..3057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59648 3054..3057 -
1691679643.4513583-UTR-H-elongata_contig59648:3053..30571691679643.4513583-UTR-H-elongata_contig59648:3053..3057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59648 3054..3057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59648.13482.1

>prot_H-elongata_contig59648.13482.1 ID=prot_H-elongata_contig59648.13482.1|Name=mRNA_H-elongata_contig59648.13482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MKEGIVVTKMLHGKYRQLWNERNTLLAPLPPQPCASGKEVNSNGKVPEGE
GDRDGGYHASLPKSTDPEALPRLGWYLYLLTKEVLGFRSSNVAFMRCLSL
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mRNA from alignment at H-elongata_contig59648:2360..3057-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59648.13482.1 ID=mRNA_H-elongata_contig59648.13482.1|Name=mRNA_H-elongata_contig59648.13482.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=698bp|location=Sequence derived from alignment at H-elongata_contig59648:2360..3057- (Himanthalia elongata Himel1 dioecious)
GGTTATGAAAGAGGGCATCGTTGTGACGAAGATGTTGCACGGGAAGTACC
GGCAACTCTGGAACGAGTGAGTTGATATTATTCTTGACGCCTATACCCGC
CGCACGCCGAACCATGACGTCATTACCATACTAACCCCGAGACGATGACG
GGAAAAAGGCTCACTAATGCAGCGAAAGGAAAAGTGCTTTACGCTTTTCT
TTTCTTTTCTTTGTTCTCGTTCTCCTCCGTAGTGTTGGTGTTGCCTAGCC
TTGCTTTGCCTTGCCGCAAAGGGAACGTGACTTACACAGTATGTATGTAT
AGATAGATAGATAGATAGATATCGTATAGATAATTTTATGTGGCTACAAC
CCCGTCGGCAACTGGGGATGCTCACCGCTTCAGGAGTGTGCCTTCTTATC
TCTCCGACGTTGATCCCTCGATATCATACTCCCCCCCTGTCACGGCTTGC
GTTGCTGCAGGCGAAATACGCTACTTGCTCCCTTGCCACCCCAGCCATGT
GCTTCTGGCAAGGAAGTAAATTCGAACGGAAAAGTGCCGGAGGGCGAAGG
CGACCGTGACGGAGGATATCACGCGTCCCTTCCGAAATCCACCGATCCCG
AAGCGCTTCCGCGGCTAGGGTGGTACCTTTATTTACTGACGAAAGAGGTC
CTGGGGTTCCGGAGCTCCAACGTAGCATTCATGCGCTGCCTTAGCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig59648:2360..3057-

>mRNA_H-elongata_contig59648.13482.1 ID=mRNA_H-elongata_contig59648.13482.1|Name=mRNA_H-elongata_contig59648.13482.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig59648:2360..3057- (Himanthalia elongata Himel1 dioecious)
ATGAAAGAGGGCATCGTTGTGACGAAGATGTTGCACGGGAAGTACCGGCA
ACTCTGGAACGAATGAAAGAGGGCATCGTTGTGACGAAGATGTTGCACGG
GAAGTACCGGCAACTCTGGAACGAGCGAAATACGCTACTTGCTCCCTTGC
CACCCCAGCCATGTGCTTCTGGCAAGGAAGTAAATTCGAACGGAAAAGTG
CCGGAGGGCGAAGGCGACCGTGACGGAGGATATCACGCGTCCCTTCCGAA
ATCCACCGATCCCGAAGCGCTTCCGCGGCTAGGGTGGTACCTTTATTTAC
TGACGAAAGAGGTCCTGGGGTTCCGGAGCTCCAACGTAGCATTCATGCGC
TGCCTTAGCCTCGCGAAATACGCTACTTGCTCCCTTGCCACCCCAGCCAT
GTGCTTCTGGCAAGGAAGTAAATTCGAACGGAAAAGTGCCGGAGGGCGAA
GGCGACCGTGACGGAGGATATCACGCGTCCCTTCCGAAATCCACCGATCC
CGAAGCGCTTCCGCGGCTAGGGTGGTACCTTTATTTACTGACGAAAGAGG
TCCTGGGGTTCCGGAGCTCCAACGTAGCATTCATGCGCTGCCTTAGCCTC
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