mRNA_H-elongata_contig5963.13478.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5963.13478.1
Unique NamemRNA_H-elongata_contig5963.13478.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: D8LR60_ECTSI (Lipase domain protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR60_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.450e-21
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 QDWHVYVTGHSLGGALGTLAALDHARRYPHARVTMYNYGSPRVGNR 138
            +DWHVY+TGHSLGGAL TLA LDH RRYP A+VTMYN+GSPRVGN+
Sbjct:    6 EDWHVYITGHSLGGALATLATLDHRRRYPEAKVTMYNFGSPRVGNK 51
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BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: A0A6H5KT38_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT38_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.120e-20
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 QDWHVYVTGHSLGGALGTLAALDHARRYPHARVTMYNYGSPRVGNR 138
            +DWHVY+TGHSLGGAL TLA LDH RRYP A+VTMYN+GSPRVGN+
Sbjct:  975 EDWHVYITGHSLGGALATLATLDHCRRYPEAKVTMYNFGSPRVGNK 1020
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BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: A0A7S0UFC6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UFC6_HEMAN)

HSP 1 Score: 70.1 bits (170), Expect = 1.700e-14
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QDWHVYVTGHSLGGALGTLAALDHARRYPHARVTMYNYGSPRVGN 135
            + W +YVTGHSLGGAL T+ A D A +YP  +V  YNYGSPRVGN
Sbjct:    4 EGWTIYVTGHSLGGALSTICAADMAEKYPGCKVVNYNYGSPRVGN 48
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BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: A0A7S1H6Z8_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H6Z8_HEMAN)

HSP 1 Score: 68.9 bits (167), Expect = 2.280e-13
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    7 WHVYVTGHSLGGALGTLAALDHARRYPHARVTMYNYGSPRVGN 135
            W +YVTGHSLGGAL T+ A D A +YP  +V  YNYGSPRVGN
Sbjct:    2 WTIYVTGHSLGGALSTICAADMAEKYPGCKVVNYNYGSPRVGN 44
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BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: A0A8J9S339_9CHLO (Probable Synaptotagmin-3 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S339_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 1.970e-12
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 QDWHVYVTGHSLGGALGTLAALDHA-RRYPHA---RVTMYNYGSPRVGN 135
              WHVYVTGHSLGGAL TL + + A RRY H     +TMYNYGSPRVGN
Sbjct:  443 DSWHVYVTGHSLGGALATLCSFELANRRYRHGGQPEITMYNYGSPRVGN 491
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BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: A0A7S0LWE7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LWE7_9CRYP)

HSP 1 Score: 65.9 bits (159), Expect = 2.550e-12
Identity = 32/42 (76.19%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   13 VYVTGHSLGGALGTLAALDHARRYPHARVTMYNYGSPRVGNR 138
            V VTGHSLG AL TL A D A  +P ARVTMYNYGSPRVGNR
Sbjct:    2 VLVTGHSLGAALATLCAADIAPLFPGARVTMYNYGSPRVGNR 43
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BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: W1NTR8_AMBTC (C2 domain-containing protein n=4 Tax=Amborella trichopoda TaxID=13333 RepID=W1NTR8_AMBTC)

HSP 1 Score: 68.2 bits (165), Expect = 3.680e-12
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 QDWHVYVTGHSLGGALGTLAALD----HARRYPHARVTMYNYGSPRVGNR 138
              WHVY+TGHSLGGAL TL AL+       +Y   RVTMYN+GSPRVGN+
Sbjct:  693 SSWHVYITGHSLGGALATLLALELSSSQLAKYDAIRVTMYNFGSPRVGNK 742
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BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: A0A7S1XD76_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1XD76_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 7.240e-12
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 QDWHVYVTGHSLGGALGTLAALDHAR-RYPHA----RVTMYNYGSPRVGN 135
            + W +Y+TGHSLGGAL TL A D +R RYP      RVTMYN+GSPRVGN
Sbjct:   22 EQWTLYITGHSLGGALATLFAADMSRKRYPEGSTPPRVTMYNFGSPRVGN 71
[Close]
BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: A0A7S0TMB5_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TMB5_HEMAN)

HSP 1 Score: 65.5 bits (158), Expect = 8.630e-12
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QDWHVYVTGHSLGGALGTLAALDHARRYPHARVTMYNYGSPRVGN 135
             D+ V++TGHSLGGAL TL A+D   R PH  VTMYN+GSP+VG+
Sbjct:   38 DDYEVFLTGHSLGGALATLCAVDVRVRMPHVGVTMYNFGSPKVGD 82
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BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Match: L1J5S5_GUITC (Lipase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5S5_GUITC)

HSP 1 Score: 67.0 bits (162), Expect = 9.390e-12
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    4 DWHVYVTGHSLGGALGTLAALDHARRYPHARVTMYNYGSPRVGN 135
            +W ++VTGHSLGGAL TL A D A  +P + V MYN+GSPRVGN
Sbjct:  754 EWKIFVTGHSLGGALSTLCAADVAALFPQSAVVMYNFGSPRVGN 797
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5963.13478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR60_ECTSI2.450e-2180.43Lipase domain protein, partial n=1 Tax=Ectocarpus ... [more]
A0A6H5KT38_9PHAE5.120e-2080.43C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S0UFC6_HEMAN1.700e-1464.44Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1H6Z8_HEMAN2.280e-1367.44Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A8J9S339_9CHLO1.970e-1267.35Probable Synaptotagmin-3 at N-terminal half n=1 Ta... [more]
A0A7S0LWE7_9CRYP2.550e-1276.19Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
W1NTR8_AMBTC3.680e-1262.00C2 domain-containing protein n=4 Tax=Amborella tri... [more]
A0A7S1XD76_9CHLO7.240e-1264.00Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S0TMB5_HEMAN8.630e-1262.22Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
L1J5S5_GUITC9.390e-1263.64Lipase n=1 Tax=Guillardia theta (strain CCMP2712) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5963contigH-elongata_contig5963:156..296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue5e-16
Seed eggNOG ortholog2880.D8LR60
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.767488-CDS-H-elongata_contig5963:155..2961622930965.767488-CDS-H-elongata_contig5963:155..296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5963 156..296 -
1691679643.2856443-CDS-H-elongata_contig5963:155..2961691679643.2856443-CDS-H-elongata_contig5963:155..296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5963 156..296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5963.13478.1prot_H-elongata_contig5963.13478.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5963 156..296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5963.13478.1

>prot_H-elongata_contig5963.13478.1 ID=prot_H-elongata_contig5963.13478.1|Name=mRNA_H-elongata_contig5963.13478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
QDWHVYVTGHSLGGALGTLAALDHARRYPHARVTMYNYGSPRVGNR*
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mRNA from alignment at H-elongata_contig5963:156..296-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5963.13478.1 ID=mRNA_H-elongata_contig5963.13478.1|Name=mRNA_H-elongata_contig5963.13478.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig5963:156..296- (Himanthalia elongata Himel1 dioecious)
CAGGACTGGCACGTCTATGTGACCGGGCACAGCCTGGGCGGCGCCCTCGG
CACCCTGGCCGCGCTGGACCACGCCCGGCGTTACCCACACGCCCGAGTTA
CGATGTACAATTATGGTAGCCCGCGCGTCGGCAACCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig5963:156..296-

>mRNA_H-elongata_contig5963.13478.1 ID=mRNA_H-elongata_contig5963.13478.1|Name=mRNA_H-elongata_contig5963.13478.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig5963:156..296- (Himanthalia elongata Himel1 dioecious)
CAGGACTGGCACGTCTATGTGACCGGGCACAGCCTGGGCGGCGCCCTCGG
CACCCTGGCCGCGCTGGACCACGCCCGGCGTTACCCACACGCCCGAGTTA
CGATGTACAATTATGGTAGCCCGCGCGTCGGCAACCGGTGACAGGACTGG
CACGTCTATGTGACCGGGCACAGCCTGGGCGGCGCCCTCGGCACCCTGGC
CGCGCTGGACCACGCCCGGCGTTACCCACACGCCCGAGTTACGATGTACA
ATTATGGTAGCCCGCGCGTCGGCAACCGGTGA
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