mRNA_H-elongata_contig59613.13475.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59613.13475.1
Unique NamemRNA_H-elongata_contig59613.13475.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: A0A6H5L2P2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.880e-18
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 ESVVVTKKHINKVVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGAT-YGVTLRVGRFFKGSTGMVDD 204
            +SVVVTK+HI+ VVG+++ + +  GDNRAG PG+LHRISVMR +E    +GVTLR+GR+F GS  +VDD
Sbjct:  569 KSVVVTKEHIDMVVGRLDLEDKFAGDNRAGVPGQLHRISVMRSREARRIFGVTLRIGRYFSGSASLVDD 637          
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: D7G6R4_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.380e-17
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    7 VVVTKKHINKVVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGATYGVTLRVGRFFKGSTGMVDD 204
            V+VT+ H+N VVGK+E  G  G DN AGF G LHR+ VMRDK G  YGVT+RVGR+ KG   MVDD
Sbjct:   27 VLVTRYHLNCVVGKLEHLGLFGRDNMAGFDGLLHRVGVMRDKGGKIYGVTIRVGRYAKGMADMVDD 92          
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: A0A6H5JW61_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW61_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.570e-17
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    7 VVVTKKHINKVVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGATYGVTLRVGRFFKGSTGMVDD 204
            V+VT+ H+N VVGK+E  G  G DN AGF G LHR+ VMRDK G  YGVT+RVGR+ KG   MVDD
Sbjct: 1634 VLVTRYHLNCVVGKLEHLGLFGRDNMAGFDGLLHRVGVMRDKGGKIYGVTIRVGRYAKGMADMVDD 1699          
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: D7FII7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.710e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   37 VVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGAT-YGVTLRVGRFFKGSTGMVDD 204
            VVG+++ +G+  GDNRAG PG+LHRISVMR +EG   +GVTLR+GR+F GS G+VDD
Sbjct:    2 VVGRLDLEGKFAGDNRAGVPGQLHRISVMRGREGRRIFGVTLRIGRYFPGSAGLVDD 58          
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: A0A3M1EVH3_9CHLR (AAA family ATPase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1EVH3_9CHLR)

HSP 1 Score: 58.9 bits (141), Expect = 1.630e-8
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   13 VTKKHINKVVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGATYGVTLRVGRFFKGSTGMVDD 204
            VT + I+ VV   ER G  GGDNRAG P  LHRIS +R++ G   G+TLRVGR   G+  +V D
Sbjct:   59 VTTEEIDYVV---ERIGAFGGDNRAGIPRTLHRISAIRNRNGRIVGLTLRVGRAVYGTVDIVRD 119          
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: A0A7S1ICH8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ICH8_9EUGL)

HSP 1 Score: 58.9 bits (141), Expect = 1.660e-8
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    4 SVVVTKKHINKVVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGATYGVTLRVGRFFKGSTGMVDD 204
            S  VTK+ ++    K+   G  GGDNRAG PG LHR+S +R+++G   G+T R+GR   G   M+ D
Sbjct:  712 SAKVTKEELSAAERKL---GAFGGDNRAGLPGTLHRVSALRNRQGNVTGLTCRIGRATAGRVDMIKD 775          
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: A0A7S0SIV1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SIV1_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 5.620e-8
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   61 GQSGGDNRAGFPGKLHRISVMRDKEGATYGVTLRVGRFFKGSTGMVDD 204
            G  G DNRAG  G LHRISV+R+++GA  G+T RVGR  +GS  +V D
Sbjct:  147 GDVGADNRAGINGTLHRISVIRNRQGAVVGLTCRVGRAIRGSAELVRD 194          
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: UPI0019561CA4 (AAA family ATPase n=1 Tax=Archangium primigenium TaxID=2792470 RepID=UPI0019561CA4)

HSP 1 Score: 57.0 bits (136), Expect = 7.790e-8
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   13 VTKKHINKVVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGATYGVTLRVGRFFKGSTGMVDD 204
            VT+K + +V+ ++   G  G DNRAG    LHR+SV+R+++G   G+TLRVGR   G+  M+ D
Sbjct:   62 VTRKELEQVLAQV---GSVGDDNRAGIERTLHRVSVIRNRQGKVVGLTLRVGRAILGTIDMLKD 122          
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: A0A7V6PTY3_9BACT (AAA family ATPase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V6PTY3_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.980e-7
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    7 VVVTKKHINKVVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGATYGVTLRVGRFFKGSTGMVDD 204
            + +T + IN +V K+   G   G+NRAG P  LHRIS +R++ G   G+TLRVGR   G+  ++ D
Sbjct:   60 IPITMEDINYIVSKV---GSFNGNNRAGIPKTLHRISCIRNRRGEIIGLTLRVGRAVYGTVDIIRD 122          
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Match: A0A2E4QLF6_9CHLR (R3H domain-containing protein n=5 Tax=Chloroflexi TaxID=200795 RepID=A0A2E4QLF6_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 1.990e-7
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   13 VTKKHINKVVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGATYGVTLRVGRFFKGSTGMVDD 204
            VT++ I  ++ KI   G+ G DNRAG    LHRISV+++++G   G+T R+GR   GS  +++D
Sbjct:   65 VTREQIVSIISKI---GKFGDDNRAGIERTLHRISVIKNRQGDPVGITCRIGRAIFGSVKLIED 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59613.13475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5L2P2_9PHAE2.880e-1859.42AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6R4_ECTSI1.380e-1762.12AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JW61_9PHAE2.570e-1762.12AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FII7_ECTSI1.710e-1563.16AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3M1EVH3_9CHLR1.630e-851.56AAA family ATPase n=1 Tax=Chloroflexi bacterium Ta... [more]
A0A7S1ICH8_9EUGL1.660e-843.28Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0SIV1_9CHLO5.620e-856.25Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
UPI0019561CA47.790e-843.75AAA family ATPase n=1 Tax=Archangium primigenium T... [more]
A0A7V6PTY3_9BACT1.980e-742.42AAA family ATPase n=1 Tax=bacterium TaxID=1869227 ... [more]
A0A2E4QLF6_9CHLR1.990e-742.19R3H domain-containing protein n=5 Tax=Chloroflexi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59613contigH-elongata_contig59613:121..895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.3e-14
Seed eggNOG ortholog2880.D7G6R4
EggNOG free text desc.ATPases associated with a variety of cellular activities
EggNOG OGs2QQ4X@2759,COG3854@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.345025-CDS-H-elongata_contig59613:120..1921622930965.345025-CDS-H-elongata_contig59613:120..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59613 121..192 -
1691679643.204028-CDS-H-elongata_contig59613:120..1921691679643.204028-CDS-H-elongata_contig59613:120..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59613 121..192 -
1622930965.362566-CDS-H-elongata_contig59613:763..8951622930965.362566-CDS-H-elongata_contig59613:763..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59613 764..895 -
1691679643.216792-CDS-H-elongata_contig59613:763..8951691679643.216792-CDS-H-elongata_contig59613:763..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59613 764..895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59613.13475.1prot_H-elongata_contig59613.13475.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59613 121..895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59613.13475.1

>prot_H-elongata_contig59613.13475.1 ID=prot_H-elongata_contig59613.13475.1|Name=mRNA_H-elongata_contig59613.13475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
ESVVVTKKHINKVVGKIERDGQSGGDNRAGFPGKLHRISVMRDKEGATYG
VTLRVGRFFKGSTGMVDD
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mRNA from alignment at H-elongata_contig59613:121..895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59613.13475.1 ID=mRNA_H-elongata_contig59613.13475.1|Name=mRNA_H-elongata_contig59613.13475.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=775bp|location=Sequence derived from alignment at H-elongata_contig59613:121..895- (Himanthalia elongata Himel1 dioecious)
GAAAGCGTTGTGGTGACCAAGAAGCACATCAATAAAGTCGTGGGCAAAAT CGAACGAGATGGACAGTCTGGCGGTGATAACAGGGCTGGATTTCCGGGAA AGCTTCACCGTATCAGCGTCATGCGTGACAAGGTGTATCGTTATTGAGGC GTTGATGATCGATATTTAACGTAATAATTTGAGCGGCTCATTCATCGATT CTTGATACACAAAGGGGAAATCGACCAAAGGGTGCGTAGAAGTGGGGCGC TTTTGAAAATTTTGATAGATAGTTCCGGATTTGACGCCGTGAGGACAGAA ACTCAAACAAAGCATCCGCGTGTCTTCATGCAATCTAATTACAAATACAA AATATTTATGAGTTTGGTTAAACGGTTTCCACCACGGAGAGCAGAACATA AAGCGTGAAGGAATCCCATCAAAAGTGGTAAAAGCACGGCTCTCTTCGCT TGAAACCCGGCTGTATGTAAGCAAGTCGTTGAAATACACGAGTTCCGACG AGTGCTATTTCGAGTCAGTAGTAAGTACACCGTAGACCATATGCCCTCAA ACACATGCTGTCGCACCTTAGTCCCGTTCAAAGAGGCACTGCTTGAAGTA CAAAATATATCCTTGAAGGTAGCTGCACCAGGCAAAAGGGGAGGCATTGA GCAGATGGTTGTGGAGTTTGGCATTGAAACAATACAGTATATTTGCTCAA CAGGAAGGCGCCACCTATGGGGTCACGCTTAGGGTGGGGCGTTTCTTCAA GGGTAGCACTGGAATGGTCGATGAC
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Coding sequence (CDS) from alignment at H-elongata_contig59613:121..895-

>mRNA_H-elongata_contig59613.13475.1 ID=mRNA_H-elongata_contig59613.13475.1|Name=mRNA_H-elongata_contig59613.13475.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig59613:121..895- (Himanthalia elongata Himel1 dioecious)
GAAAGCGTTGTGGTGACCAAGAAGCACATCAATAAAGTCGTGGGCAAAAT
CGAACGAGATGGACAGTCTGGCGGTGATAACAGGGCTGGATTTCCGGGAA
AGCTTCACCGTATCAGCGTCATGCGTGACAAGGAAAGCGTTGTGGTGACC
AAGAAGCACATCAATAAAGTCGTGGGCAAAATCGAACGAGATGGACAGTC
TGGCGGTGATAACAGGGCTGGATTTCCGGGAAAGCTTCACCGTATCAGCG
TCATGCGTGACAAGGAAGGCGCCACCTATGGGGTCACGCTTAGGGTGGGG
CGTTTCTTCAAGGGTAGCACTGGAATGGTCGATGACGAAGGCGCCACCTA
TGGGGTCACGCTTAGGGTGGGGCGTTTCTTCAAGGGTAGCACTGGAATGG
TCGATGAC
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