mRNA_H-elongata_contig596.13473.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig596.13473.1
Unique NamemRNA_H-elongata_contig596.13473.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.180e-37
Identity = 80/164 (48.78%), Postives = 109/164 (66.46%), Query Frame = 3
Query:  204 QGGALLHSGVLVALIESSFETNRAGEAGPAVMSLGLADDIAEVSFRKNSLFCVSGEYGFE---SSSEGSDTCRIEVVCSCCNIKCNEVSGSITL-DESTVPVCEVVPTGVNQTKTN-MTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTG 680
             GGA LHSGVLV L  S+F  NRA +AG AV SLG+A +I + +F  N+ +C SG+YG+E      E S TCR  VVCS C   C +  GS+ + +++ VP+CE   TGV+ +    +T+  L LL+GYYRTS +SQ+V +CY+ EACIGG++ S YC +GY G
Sbjct:  491 SGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRG 654          
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.470e-35
Identity = 69/163 (42.33%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  195 SDVQGGALLHSGVLVALIESSFETNRAGEAGPAVMSLGLADDIAEVSFRKNSLFCVSGEYGFESSSEGSDTCRIEVVCSCCNIKCNEVSGSITLDESTVPVCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
            +++ GG + H+G L  +IE+ F +N AG+ G AV S+G+      V+F  N+L C  GEY ++  +E  D+CR E+ C+ C+  C+ +  S+T+ +ST+PVC  +  G   + +  TV TL+L +GYYRTS +SQ V ECY + AC GG++  NYCA GY GP
Sbjct:  225 AEISGGTIFHTGYL-GMIETVFASNEAGQDGTAVFSIGVVQQALNVTFASNTLNCPLGEYAYDKEAED-DSCRFELACARCSADCDAIPSSVTMADSTIPVCLELMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGP 385          
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.650e-33
Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = 3
Query:  198 DVQGGALLHSGVLVALIESSFETNRAGEAGPAVMSLGLADDIAEVSFRKNSLFCVSGEYGFESSSEGSDTCRIEVVCSCCNIKCNEVSGSITLDESTVPVCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
            ++ GG + H+G L  +IE+ F +N AG+ G AV S+G+      V+F  N+L C  GE  ++  +E  D+CR E+ C+ C+  C+ +  S+T+ +ST+PVC     G   + +  TV TL+L +GYYRTS +SQ V ECY + AC GG++  NYCA GY GP
Sbjct:  467 EISGGTIFHTGHL-GMIETVFASNEAGQDGTAVFSMGVVQKALNVAFASNTLNCPPGENAYDKEAED-DSCRFELACARCSADCDAIPSSVTMADSTIPVCVESMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGP 626          
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 4.550e-19
Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  345 NSLFCVSGEYGFESSSE-----GSDTCRIEVVCSCCNIKCNEV--SGSITLDESTVPVCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
            N  +C  GE+G E+  +     G+D CR   VCS C  +C+    S +  +D  T+P CE  P G   T+   T+ TLE+L G+YR+S  S D+REC+  +AC GGS    YCA+GY GP
Sbjct:  514 NDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAETLPTCEEAPEGSRTTRRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGP 633          
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.840e-18
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  345 NSLFCVSGEYGFESSSE-----GSDTCRIEVVCSCCNIKC-NEVSGSITL-DESTVPVCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
            N  +C  GE+G E+  +     G+D CR   VCS C  +C +E+  +  L D  T+P CE  P G   T+   T+ TLE+L G+YR+S  S D+REC+  +AC GGS    YC++GY GP
Sbjct:  490 NDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADTLPTCETAPEGSRTTRRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGP 609          
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A7S4MJB6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MJB6_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 2.780e-7
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3
Query:  498 CEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNA-SNYCAQGYTGP 683
            C   P G + +    +++TL L  G++RT NQS+DVREC+ S+ACIG  NA S+ CA G+ GP
Sbjct:  139 CTACPHGADCSTQGTSLETLPLKAGFWRTGNQSEDVRECFTSDACIGSCNATSSVCADGHLGP 201          
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A7S2VWR0_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWR0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.850e-6
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 3
Query:  498 CEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
            C  +  G+      +T++TL L  G++RTSN S D+REC  + AC+GG N++N C +G+TGP
Sbjct:  181 CVEIVEGIRNDIEGLTLETLTLFPGWWRTSNTSDDIRECIIAGACLGG-NSTNMCREGHTGP 241          
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A7R9U892_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U892_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.880e-6
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 3
Query:  495 VCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGY 674
            VCE    GV        +  L LL G++R+  QS DVREC + +AC+GG+NA +YCA G+
Sbjct:   13 VCETCGEGVVCNDFGNKLTNLTLLPGFWRSGRQSTDVRECIERDACVGGTNADDYCAPGH 72          
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A7R9U1A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1A3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.150e-6
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  495 VCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGY 674
            VC     G+        + TL+L +GY+R+   S D+R+C   +AC+GG++ASNYCA+G+
Sbjct:   13 VCVFCGEGLTCNSFGNVLPTLQLQRGYWRSGPMSGDIRDCISRDACVGGTDASNYCAEGH 72          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE1.180e-3748.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWD7_ECTSI3.470e-3542.33Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JSF5_9PHAE1.650e-3341.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI4.550e-1941.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE2.840e-1841.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4MJB6_9EUKA2.780e-747.62Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2VWR0_9STRA2.850e-643.55Hypothetical protein n=2 Tax=Triparma pacifica Tax... [more]
A0A7R9U892_9STRA5.880e-645.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7R9U1A3_9STRA7.150e-640.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig596contigH-elongata_contig596:2923..4059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue6e-19
Seed eggNOG ortholog2880.D7FTU5
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size684
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig596.13473.1prot_H-elongata_contig596.13473.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig596 3219..4059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.1331315-UTR-H-elongata_contig596:2922..32181622930965.1331315-UTR-H-elongata_contig596:2922..3218Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig596 2923..3218 +
1691679643.1104648-UTR-H-elongata_contig596:2922..32181691679643.1104648-UTR-H-elongata_contig596:2922..3218Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig596 2923..3218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.1509647-CDS-H-elongata_contig596:3218..33171622930965.1509647-CDS-H-elongata_contig596:3218..3317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 3219..3317 +
1691679643.1384706-CDS-H-elongata_contig596:3218..33171691679643.1384706-CDS-H-elongata_contig596:3218..3317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 3219..3317 +
1622930965.1689165-CDS-H-elongata_contig596:3771..40591622930965.1689165-CDS-H-elongata_contig596:3771..4059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 3772..4059 +
1691679643.1556668-CDS-H-elongata_contig596:3771..40591691679643.1556668-CDS-H-elongata_contig596:3771..4059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 3772..4059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig596.13473.1

>prot_H-elongata_contig596.13473.1 ID=prot_H-elongata_contig596.13473.1|Name=mRNA_H-elongata_contig596.13473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MSLGLADDIAEVSFRKNSLFCVSGEYGFESSSEGSDTCRIEVVCSCCNIK
CNEVSGSITLDESTVPVCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQS
QDVRECYKSEACIGGSNASNYCAQGYTGP
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mRNA from alignment at H-elongata_contig596:2923..4059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig596.13473.1 ID=mRNA_H-elongata_contig596.13473.1|Name=mRNA_H-elongata_contig596.13473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1137bp|location=Sequence derived from alignment at H-elongata_contig596:2923..4059+ (Himanthalia elongata Himel1 dioecious)
CTGGAAGTGGGTACCTTACGGGGTCCATGCACGGGACTTCTCATTGCAAC CAAGTCCCCGTGGAGCGTATTTTTGGGTCAGCGAGGCCTTTTCCTCTAGT CAGTCTCGCTTGTTTCGTGCCTACATATATTATATATATTCGCAATCCGC CCTTTCTTTCTTACGAGTGATGTTCTTTTGTTATTTCTGTCTTTTCAGAC GTACAAGGTGGTGCCCTCCTGCACTCCGGCGTACTAGTGGCGTTGATCGA GAGTTCATTTGAAACAAACAGGGCTGGCGAGGCCGGGCCAGCAGTAATGA GCCTCGGTCTTGCAGACGATATCGCAGAAGTATCGTTCCGAAAAAACTCG CTATTCTGCGTCTCGGGCGAGTACGGCTTCGAGAGCAGCAGTGAGGTAAT CGTGTAAAAATGGCTTCCAATTAACACCCAAACTTCAAATCGCAGTTTCG CAGCTTGATCCTTCCCCCGTCGTCTGTCGTTGTCGTTTTATGTCCAGCAA AGGGTATTATTGCCTGAGTATATGACGATCTTCTCGTTTAGGAATAGTTT TATTATTGGAAGGTGTTTTCCTCTCTCAGCTTCGGTTGCAATGTTTTAGG AATTACACATTTTGGCGGACCGATTATGGTTCAACCGCGAAATATCGAGC ACGCAACGTACTTGGATATACTTTAGGTTCAGTTTGGTAGTTAATTATTA TCTTGACAATCACCACACCTATATAGCCTGCAACGCTTTCAAAGTGTTTC TTCCGGCACGTGGCGTATTCTACGTTATCAACGCATCGACGACCACAACT TAATAACAAACACGAGCTAACCCCACCTTGCCGATCACTCCGCTCCCAGG GTTCCGATACCTGCCGTATAGAGGTCGTCTGCTCTTGTTGCAACATCAAG TGTAACGAAGTCTCCGGGAGCATTACCTTAGACGAATCAACGGTGCCAGT TTGCGAGGTCGTCCCCACAGGGGTGAACCAAACAAAGACAAACATGACCG TCGACACGCTGGAACTCCTACAGGGGTACTACCGAACTTCAAACCAGAGC CAGGATGTACGGGAGTGTTATAAATCGGAGGCTTGTATCGGAGGCTCAAA CGCAAGTAACTACTGTGCACAGGGCTACACAGGCCCA
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Coding sequence (CDS) from alignment at H-elongata_contig596:2923..4059+

>mRNA_H-elongata_contig596.13473.1 ID=mRNA_H-elongata_contig596.13473.1|Name=mRNA_H-elongata_contig596.13473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig596:2923..4059+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCTCGGTCTTGCAGACGATATCGCAGAAGTATCGTTCCGAAAAAA
CTCGCTATTCTGCGTCTCGGGCGAGTACGGCTTCGAGAGCAGCAGTGAGA
TGAGCCTCGGTCTTGCAGACGATATCGCAGAAGTATCGTTCCGAAAAAAC
TCGCTATTCTGCGTCTCGGGCGAGTACGGCTTCGAGAGCAGCAGTGAGGG
TTCCGATACCTGCCGTATAGAGGTCGTCTGCTCTTGTTGCAACATCAAGT
GTAACGAAGTCTCCGGGAGCATTACCTTAGACGAATCAACGGTGCCAGTT
TGCGAGGTCGTCCCCACAGGGGTGAACCAAACAAAGACAAACATGACCGT
CGACACGCTGGAACTCCTACAGGGGTACTACCGAACTTCAAACCAGAGCC
AGGATGTACGGGAGTGTTATAAATCGGAGGCTTGTATCGGAGGCTCAAAC
GCAAGTAACTACTGTGCACAGGGCTACACAGGCCCAGGTTCCGATACCTG
CCGTATAGAGGTCGTCTGCTCTTGTTGCAACATCAAGTGTAACGAAGTCT
CCGGGAGCATTACCTTAGACGAATCAACGGTGCCAGTTTGCGAGGTCGTC
CCCACAGGGGTGAACCAAACAAAGACAAACATGACCGTCGACACGCTGGA
ACTCCTACAGGGGTACTACCGAACTTCAAACCAGAGCCAGGATGTACGGG
AGTGTTATAAATCGGAGGCTTGTATCGGAGGCTCAAACGCAAGTAACTAC
TGTGCACAGGGCTACACAGGCCCA
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