mRNA_H-elongata_contig596.13473.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 149 bits (376), Expect = 1.180e-37 Identity = 80/164 (48.78%), Postives = 109/164 (66.46%), Query Frame = 3
Query: 204 QGGALLHSGVLVALIESSFETNRAGEAGPAVMSLGLADDIAEVSFRKNSLFCVSGEYGFE---SSSEGSDTCRIEVVCSCCNIKCNEVSGSITL-DESTVPVCEVVPTGVNQTKTN-MTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTG 680
GGA LHSGVLV L S+F NRA +AG AV SLG+A +I + +F N+ +C SG+YG+E E S TCR VVCS C C + GS+ + +++ VP+CE TGV+ + +T+ L LL+GYYRTS +SQ+V +CY+ EACIGG++ S YC +GY G
Sbjct: 491 SGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRG 654
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI) HSP 1 Score: 142 bits (357), Expect = 3.470e-35 Identity = 69/163 (42.33%), Postives = 104/163 (63.80%), Query Frame = 3
Query: 195 SDVQGGALLHSGVLVALIESSFETNRAGEAGPAVMSLGLADDIAEVSFRKNSLFCVSGEYGFESSSEGSDTCRIEVVCSCCNIKCNEVSGSITLDESTVPVCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
+++ GG + H+G L +IE+ F +N AG+ G AV S+G+ V+F N+L C GEY ++ +E D+CR E+ C+ C+ C+ + S+T+ +ST+PVC + G + + TV TL+L +GYYRTS +SQ V ECY + AC GG++ NYCA GY GP
Sbjct: 225 AEISGGTIFHTGYL-GMIETVFASNEAGQDGTAVFSIGVVQQALNVTFASNTLNCPLGEYAYDKEAED-DSCRFELACARCSADCDAIPSSVTMADSTIPVCLELMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGP 385
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.650e-33 Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = 3
Query: 198 DVQGGALLHSGVLVALIESSFETNRAGEAGPAVMSLGLADDIAEVSFRKNSLFCVSGEYGFESSSEGSDTCRIEVVCSCCNIKCNEVSGSITLDESTVPVCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
++ GG + H+G L +IE+ F +N AG+ G AV S+G+ V+F N+L C GE ++ +E D+CR E+ C+ C+ C+ + S+T+ +ST+PVC G + + TV TL+L +GYYRTS +SQ V ECY + AC GG++ NYCA GY GP
Sbjct: 467 EISGGTIFHTGHL-GMIETVFASNEAGQDGTAVFSMGVVQKALNVAFASNTLNCPPGENAYDKEAED-DSCRFELACARCSADCDAIPSSVTMADSTIPVCVESMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGP 626
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 4.550e-19 Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 3
Query: 345 NSLFCVSGEYGFESSSE-----GSDTCRIEVVCSCCNIKCNEV--SGSITLDESTVPVCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
N +C GE+G E+ + G+D CR VCS C +C+ S + +D T+P CE P G T+ T+ TLE+L G+YR+S S D+REC+ +AC GGS YCA+GY GP
Sbjct: 514 NDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAETLPTCEEAPEGSRTTRRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGP 633
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 2.840e-18 Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 3
Query: 345 NSLFCVSGEYGFESSSE-----GSDTCRIEVVCSCCNIKC-NEVSGSITL-DESTVPVCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
N +C GE+G E+ + G+D CR VCS C +C +E+ + L D T+P CE P G T+ T+ TLE+L G+YR+S S D+REC+ +AC GGS YC++GY GP
Sbjct: 490 NDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADTLPTCETAPEGSRTTRRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGP 609
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A7S4MJB6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MJB6_9EUKA) HSP 1 Score: 61.2 bits (147), Expect = 2.780e-7 Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3
Query: 498 CEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNA-SNYCAQGYTGP 683
C P G + + +++TL L G++RT NQS+DVREC+ S+ACIG NA S+ CA G+ GP
Sbjct: 139 CTACPHGADCSTQGTSLETLPLKAGFWRTGNQSEDVRECFTSDACIGSCNATSSVCADGHLGP 201
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A7S2VWR0_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWR0_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.850e-6 Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 3
Query: 498 CEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGYTGP 683
C + G+ +T++TL L G++RTSN S D+REC + AC+GG N++N C +G+TGP
Sbjct: 181 CVEIVEGIRNDIEGLTLETLTLFPGWWRTSNTSDDIRECIIAGACLGG-NSTNMCREGHTGP 241
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A7R9U892_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U892_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 5.880e-6 Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 3
Query: 495 VCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGY 674
VCE GV + L LL G++R+ QS DVREC + +AC+GG+NA +YCA G+
Sbjct: 13 VCETCGEGVVCNDFGNKLTNLTLLPGFWRSGRQSTDVRECIERDACVGGTNADDYCAPGH 72
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Match: A0A7R9U1A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1A3_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 7.150e-6 Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 3
Query: 495 VCEVVPTGVNQTKTNMTVDTLELLQGYYRTSNQSQDVRECYKSEACIGGSNASNYCAQGY 674
VC G+ + TL+L +GY+R+ S D+R+C +AC+GG++ASNYCA+G+
Sbjct: 13 VCVFCGEGLTCNSFGNVLPTLQLQRGYWRSGPMSGDIRDCISRDACVGGTDASNYCAEGH 72 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig596.13473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig596.13473.1 >prot_H-elongata_contig596.13473.1 ID=prot_H-elongata_contig596.13473.1|Name=mRNA_H-elongata_contig596.13473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp MSLGLADDIAEVSFRKNSLFCVSGEYGFESSSEGSDTCRIEVVCSCCNIKback to top mRNA from alignment at H-elongata_contig596:2923..4059+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig596.13473.1 ID=mRNA_H-elongata_contig596.13473.1|Name=mRNA_H-elongata_contig596.13473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1137bp|location=Sequence derived from alignment at H-elongata_contig596:2923..4059+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig596:2923..4059+ >mRNA_H-elongata_contig596.13473.1 ID=mRNA_H-elongata_contig596.13473.1|Name=mRNA_H-elongata_contig596.13473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig596:2923..4059+ (Himanthalia elongata Himel1 dioecious)back to top |