mRNA_H-elongata_contig596.13472.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig596.13472.1
Unique NamemRNA_H-elongata_contig596.13472.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig596.13472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig596contigH-elongata_contig596:1106..3184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size574
Cds size573
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig596.13472.1prot_H-elongata_contig596.13472.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig596 1106..3184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.969038-CDS-H-elongata_contig596:1105..11901622930964.969038-CDS-H-elongata_contig596:1105..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 1106..1190 +
1691679643.0649364-CDS-H-elongata_contig596:1105..11901691679643.0649364-CDS-H-elongata_contig596:1105..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 1106..1190 +
1622930964.9959707-CDS-H-elongata_contig596:1888..19721622930964.9959707-CDS-H-elongata_contig596:1888..1972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 1889..1972 +
1691679643.072712-CDS-H-elongata_contig596:1888..19721691679643.072712-CDS-H-elongata_contig596:1888..1972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 1889..1972 +
1622930965.0360365-CDS-H-elongata_contig596:2295..24571622930965.0360365-CDS-H-elongata_contig596:2295..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 2296..2457 +
1691679643.080483-CDS-H-elongata_contig596:2295..24571691679643.080483-CDS-H-elongata_contig596:2295..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 2296..2457 +
1622930965.059222-CDS-H-elongata_contig596:2741..29191622930965.059222-CDS-H-elongata_contig596:2741..2919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 2742..2919 +
1691679643.0885146-CDS-H-elongata_contig596:2741..29191691679643.0885146-CDS-H-elongata_contig596:2741..2919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 2742..2919 +
1622930965.0871713-CDS-H-elongata_contig596:3120..31841622930965.0871713-CDS-H-elongata_contig596:3120..3184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 3121..3184 +
1691679643.096991-CDS-H-elongata_contig596:3120..31841691679643.096991-CDS-H-elongata_contig596:3120..3184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig596 3121..3184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig596.13472.1

>prot_H-elongata_contig596.13472.1 ID=prot_H-elongata_contig596.13472.1|Name=mRNA_H-elongata_contig596.13472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
GAIALTAKSTLHIDGPAWFYSNEAKGNGGAIFLEYESTIHIDGPVSFYSN
EAKDNGGAIYASDSSLFVENGTQFVYNVAATASGGGVYSLRAVVSLKEAT
FTGNSGVWGGGVAHFSSGSLWDDKVDNSGPANVTGCTFDGNQATDGGAIY
SSAGYDMVVNSSFSGNVARRRTRWCPPALRRTSGVDREFI*
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mRNA from alignment at H-elongata_contig596:1106..3184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig596.13472.1 ID=mRNA_H-elongata_contig596.13472.1|Name=mRNA_H-elongata_contig596.13472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2079bp|location=Sequence derived from alignment at H-elongata_contig596:1106..3184+ (Himanthalia elongata Himel1 dioecious)
GGTGCAATTGCCTTGACAGCGAAAAGCACTTTACATATCGACGGGCCGGC
GTGGTTTTACAGCAACGAAGCAAAGGGCAATGGAGGTATAGTACAATAAT
GGAGGACAGTATACAAATCAATATCAGCTGGTGCGCTCTCCCCACTAGGG
CGTAGATCGTAACAATACCACAAATCTTCCGTCGTAAGCACATTCGGCGC
GTGAGGTTCAATTAGAAGGCGCTTAGCGAAGTGAACGTCAACGGTGTTCA
CATTGCATATCGAGGATGGTGTGGACTCCTTACGGGGCATTAATATTGTT
CCTCGATCTTATAGCGACAGAGAAATGTATAAGTAGTTTGAGTACGACAT
CTTTGGATGTCGTCGACAGAAACAACCTTGGCGTACCGCTTCATTGACAA
CCAACCGTAGATAATACCCAGATTTCATACTTTGGGCTTTTATACGCAAT
TAATGCAGAATATAGAGGTGAAATGCCGTGTGCCTTTTGCACCCAATACT
GCGACGAACGGAGGTATGTGCGGAAGACAGCAAGGCTCATATATTGAATG
CATCGTTTCGCGACTCCAATTCCCTCCGCTACCGTGGAGGATGTGGACAC
GATTTCAGCAAGATTTGACCTCGTTATCCACCTCCGAAGTAATGATCGGT
AGTGGGACAGATATTTCCCGTCGATTACAACAATCCCCGAGAATATTAGC
GTCGGGAATAATGCACATTCCACCCACTGACGGTGAACCTTAACGCACAC
GCCATACGGGGTCCGTACTCACTTCTTTCACAGGTGCAATTTTCTTGGAA
TATGAAAGCACGATACATATCGACGGGCCGGTGTCGTTTTATAGCAACGA
GGCAAAGGACAACGGAGGTATACTACACCGCTAATGGAAGGCAGTATAGA
AATCAATATCAGCTGATACGCTCCTCCTATTGTGGCGTAGATCGTAAAAA
TACCACAAGTATTTCGCCTTAAGAACGTTTGTTTGTCGTCCCACTAGTGT
CGCGGGTACTCATCGGTCTGGGTGAGCTATAATTCACACGAAGGCACTAA
TAGTTAATTTTTAGTGCAGACTAGATATAACGGTCTACATAGGATCGTGC
AATCATTATGCATCGCTCGAGTGCACCCATTACTACCGAGAACTCCAGGC
TGGTCGCGTCCGAACGTTATCATACGCCTCCGATCCTCAGGTGCTATCTA
CGCCAGTGACTCTTCGCTTTTTGTCGAGAATGGGACACAGTTCGTGTATA
ACGTCGCTGCCACCGCCTCCGGGGGTGGTGTGTATTCTTTGAGGGCCGTC
GTGTCTTTAAAAGAAGCAACCTTCACTGGAAATAGTGGCGTCTGGGGTGG
AGGTGGGTCGGCAGCTCAGCTCTAGAAGCGTGACATGTTGGAAGGGGTGA
GAGATCCAGCGCTGTAATGACTGGAAGTAGCTACAGTATATTGCCAAGTT
GCCTTTTAGCAACCGTAGGGCTACAGCACATCGCCGCAGCAGATCTACAC
TGCATAACTCTACGTAGATATCTCAATCTAGCCTAAGCCACGATTGTCAA
TAGTTTCAAAATAGGAGAGCTTCACTCAGCCTACCTGCTATTGTCTAAAT
TTCAGCGGAAAATGTCCCGCAACCACCCACAATCAGGTGTTGCACATTTT
TCATCGGGATCCTTATGGGACGACAAAGTGGATAACTCCGGCCCCGCCAA
TGTTACGGGTTGCACGTTTGACGGCAATCAGGCAACGGATGGAGGAGCCA
TATATAGTAGTGCGGGTTACGACATGGTCGTGAATTCATCCTTCTCTGGA
AATGTTGCACGTAGGTCCTGGAAGTGGGTACCTTACGGGGTCCATGCACG
GGACTTCTCATTGCAACCAAGTCCCCGTGGAGCGTATTTTTGGGTCAGCG
AGGCCTTTTCCTCTAGTCAGTCTCGCTTGTTTCGTGCCTACATATATTAT
ATATATTCGCAATCCGCCCTTTCTTTCTTACGAGTGATGTTCTTTTGTTA
TTTCTGTCTTTTCAGACGTACAAGGTGGTGCCCTCCTGCACTCCGGCGTA
CTAGTGGCGTTGATCGAGAGTTCATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig596:1106..3184+

>mRNA_H-elongata_contig596.13472.1 ID=mRNA_H-elongata_contig596.13472.1|Name=mRNA_H-elongata_contig596.13472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig596:1106..3184+ (Himanthalia elongata Himel1 dioecious)
GGTGCAATTGCCTTGACAGCGAAAAGCACTTTACATATCGACGGGCCGGC
GTGGTTTTACAGCAACGAAGCAAAGGGCAATGGAGGGTGCAATTGCCTTG
ACAGCGAAAAGCACTTTACATATCGACGGGCCGGCGTGGTTTTACAGCAA
CGAAGCAAAGGGCAATGGAGGTGCAATTTTCTTGGAATATGAAAGCACGA
TACATATCGACGGGCCGGTGTCGTTTTATAGCAACGAGGCAAAGGACAAC
GGAGGTGCAATTTTCTTGGAATATGAAAGCACGATACATATCGACGGGCC
GGTGTCGTTTTATAGCAACGAGGCAAAGGACAACGGAGGTGCTATCTACG
CCAGTGACTCTTCGCTTTTTGTCGAGAATGGGACACAGTTCGTGTATAAC
GTCGCTGCCACCGCCTCCGGGGGTGGTGTGTATTCTTTGAGGGCCGTCGT
GTCTTTAAAAGAAGCAACCTTCACTGGAAATAGTGGCGTCTGGGGTGGAG
GTGCTATCTACGCCAGTGACTCTTCGCTTTTTGTCGAGAATGGGACACAG
TTCGTGTATAACGTCGCTGCCACCGCCTCCGGGGGTGGTGTGTATTCTTT
GAGGGCCGTCGTGTCTTTAAAAGAAGCAACCTTCACTGGAAATAGTGGCG
TCTGGGGTGGAGGTGTTGCACATTTTTCATCGGGATCCTTATGGGACGAC
AAAGTGGATAACTCCGGCCCCGCCAATGTTACGGGTTGCACGTTTGACGG
CAATCAGGCAACGGATGGAGGAGCCATATATAGTAGTGCGGGTTACGACA
TGGTCGTGAATTCATCCTTCTCTGGAAATGTTGCACGTAGGTGTTGCACA
TTTTTCATCGGGATCCTTATGGGACGACAAAGTGGATAACTCCGGCCCCG
CCAATGTTACGGGTTGCACGTTTGACGGCAATCAGGCAACGGATGGAGGA
GCCATATATAGTAGTGCGGGTTACGACATGGTCGTGAATTCATCCTTCTC
TGGAAATGTTGCACGTAGACGTACAAGGTGGTGCCCTCCTGCACTCCGGC
GTACTAGTGGCGTTGATCGAGAGTTCATTTGAACGTACAAGGTGGTGCCC
TCCTGCACTCCGGCGTACTAGTGGCGTTGATCGAGAGTTCATTTGA
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